Wall clock time and date at job start Tue Mar 31 2020 02:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39871 * 125.90317 * 2 1 4 4 C 1.35305 * 107.92412 * 180.14109 * 3 2 1 5 5 C 1.50697 * 126.12950 * 179.90247 * 4 3 2 6 6 N 1.46499 * 109.47276 * 94.68718 * 5 4 3 7 7 C 1.34784 * 119.99971 * 180.02562 * 6 5 4 8 8 O 1.21583 * 119.99855 * 359.72712 * 7 6 5 9 9 N 1.34771 * 119.99547 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99515 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47042 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47346 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47235 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00370 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99790 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99980 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99622 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47485 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46928 * 119.99930 * 17 15 13 20 20 H 1.48497 * 109.46969 * 239.99547 * 17 15 13 21 21 N 1.34951 * 107.74686 * 359.63963 * 4 3 2 22 22 C 1.46501 * 126.03754 * 180.20881 * 21 4 3 23 23 N 1.30838 * 125.89975 * 179.73338 * 2 1 3 24 24 H 1.09006 * 109.47271 * 270.23919 * 1 2 3 25 25 H 1.08998 * 109.47266 * 30.23600 * 1 2 3 26 26 H 1.08998 * 109.47395 * 150.23888 * 1 2 3 27 27 H 1.08006 * 126.03350 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47205 * 334.68693 * 5 4 3 29 29 H 1.09005 * 109.47240 * 214.68902 * 5 4 3 30 30 H 0.96999 * 119.99984 * 0.02562 * 6 5 4 31 31 H 0.96999 * 120.00409 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.47564 * 300.00635 * 10 9 7 33 33 H 1.09000 * 109.46872 * 60.00432 * 10 9 7 34 34 H 1.08996 * 109.47407 * 300.00667 * 11 10 9 35 35 H 1.09000 * 109.46986 * 60.00438 * 11 10 9 36 36 H 1.09004 * 109.47108 * 300.00289 * 12 11 10 37 37 H 1.09000 * 109.46870 * 60.00183 * 12 11 10 38 38 H 0.97002 * 119.99804 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.46770 * 89.99807 * 22 21 4 40 40 H 1.09004 * 109.46895 * 209.99432 * 22 21 4 41 41 H 1.08998 * 109.47248 * 329.99694 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7153 -0.0032 5 6 4.8350 1.5988 -0.0064 6 7 5.3003 1.7939 1.3690 7 6 6.3859 2.5549 1.6116 8 8 6.9820 3.0755 0.6885 9 7 6.8136 2.7348 2.8769 10 6 7.9940 3.5616 3.1406 11 6 8.2629 3.6012 4.6462 12 6 9.4952 4.4651 4.9217 13 6 9.7604 4.5037 6.4047 14 1 9.1144 3.9661 7.0829 15 6 10.8273 5.2261 6.8956 16 7 11.6137 5.8811 6.0697 17 14 11.1564 5.2732 8.7338 18 1 10.1349 4.4597 9.4407 19 1 12.5070 4.7209 9.0091 20 1 11.0887 6.6772 9.2129 21 7 3.6087 -0.6342 0.0030 22 6 4.7899 -1.5008 0.0066 23 7 2.2741 -1.0598 0.0049 24 1 -0.3634 0.0043 1.0277 25 1 -0.3634 0.8878 -0.5175 26 1 -0.3634 -0.8921 -0.5101 27 1 1.9923 2.1598 0.0004 28 1 4.5836 2.5644 -0.4453 29 1 5.6233 1.1271 -0.5932 30 1 4.8270 1.3754 2.1050 31 1 6.3403 2.3163 3.6130 32 1 8.8572 3.1363 2.6287 33 1 7.8176 4.5735 2.7759 34 1 7.3997 4.0263 5.1584 35 1 8.4395 2.5892 5.0105 36 1 10.3586 4.0404 4.4094 37 1 9.3182 5.4771 4.5575 38 1 12.3640 6.3896 6.4152 39 1 5.0831 -1.7110 1.0352 40 1 4.5561 -2.4357 -0.5029 41 1 5.6091 -1.0006 -0.5098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285281021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:56 Heat of formation + Delta-G solvation = 28.734940 kcal Electronic energy + Delta-G solvation = -20667.985143 eV Core-core repulsion = 17391.168204 eV Total energy + Delta-G solvation = -3276.816940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.69014 -39.80546 -35.85046 -34.98002 -34.05871 -33.32088 -31.54924 -30.69456 -29.77021 -27.19728 -25.94838 -25.57642 -23.00503 -20.93234 -20.81310 -20.43051 -19.85881 -18.19853 -17.01436 -16.48299 -16.20109 -15.70499 -15.58625 -14.67027 -14.59294 -14.41562 -14.10764 -14.01674 -13.87821 -13.73319 -13.25591 -13.02055 -12.67256 -12.47898 -12.30654 -12.17727 -11.81945 -11.71542 -10.93588 -10.89431 -10.74824 -10.58100 -10.25983 -9.88004 -9.55282 -9.42265 -9.35060 -9.12411 -8.87167 -8.67452 -8.38541 -6.03014 -4.06005 1.33756 2.11721 2.33676 2.92043 3.27858 3.29059 3.36660 3.40111 4.05915 4.13827 4.33552 4.44335 4.64108 4.76184 4.82524 5.00420 5.06820 5.27543 5.30357 5.32865 5.33325 5.47407 5.56179 5.67710 5.79024 5.85421 6.15092 6.23361 6.33221 6.48413 6.60092 6.60253 6.75036 6.98840 7.00641 7.37536 7.62852 7.75245 7.95953 8.05418 8.36808 8.65671 9.00915 9.58221 11.08274 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.033868 B = 0.002312 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.533519 B =12108.952145 C =12326.854246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.068 3.932 3 C -0.247 4.247 4 C 0.066 3.934 5 C 0.206 3.794 6 N -0.749 5.749 7 C 0.702 3.298 8 O -0.591 6.591 9 N -0.740 5.740 10 C 0.135 3.865 11 C -0.120 4.120 12 C 0.023 3.977 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.364 5.364 22 C 0.098 3.902 23 N -0.290 5.290 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.397 0.603 31 H 0.394 0.606 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.908 -13.333 -12.634 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.277 4.277 4 C -0.062 4.062 5 C 0.080 3.920 6 N -0.407 5.407 7 C 0.402 3.598 8 O -0.469 6.469 9 N -0.394 5.394 10 C 0.012 3.988 11 C -0.159 4.159 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.147 5.147 22 C -0.044 4.044 23 N -0.114 5.114 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.168 0.832 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.230 0.770 31 H 0.227 0.773 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.979 -14.083 -13.501 27.218 hybrid contribution -0.079 0.508 1.714 1.790 sum -19.058 -13.576 -11.787 26.200 Atomic orbital electron populations 1.20182 0.86492 1.03345 1.03065 1.22355 0.97069 0.90649 0.99663 1.21236 0.90715 1.00107 1.15685 1.21040 0.96845 0.84632 1.03665 1.19513 0.90680 0.97994 0.83797 1.45102 1.31599 1.55646 1.08380 1.15952 0.80317 0.79524 0.84008 1.90935 1.58655 1.53972 1.43320 1.45391 1.33076 1.55075 1.05822 1.21538 0.85204 0.93927 0.98160 1.21893 1.01375 1.01325 0.91260 1.19035 0.91075 0.94547 0.96765 1.21238 1.12002 1.30394 0.92360 0.92611 1.25040 0.96133 0.95491 0.97878 1.69977 1.16944 1.32055 1.34255 0.86524 0.78098 0.77766 0.85523 1.19783 1.21006 1.20995 1.48466 1.05612 1.04127 1.56481 1.21921 0.83758 0.94916 1.03761 1.77344 0.86212 1.22721 1.25113 0.90457 0.90300 0.90958 0.83196 0.88835 0.90450 0.76979 0.77259 0.91890 0.91838 0.92737 0.92784 0.96235 0.96204 0.92974 0.90452 0.89130 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 36.00 0.38 -0.07 16 2 C 0.07 0.65 7.22 -82.41 -0.59 0.06 16 3 C -0.25 -2.26 10.65 -40.02 -0.43 -2.69 16 4 C 0.07 0.61 6.30 -82.27 -0.52 0.09 16 5 C 0.21 1.94 5.84 -5.20 -0.03 1.91 16 6 N -0.75 -7.74 5.55 -66.41 -0.37 -8.11 16 7 C 0.70 10.17 8.57 -86.92 -0.74 9.43 16 8 O -0.59 -11.04 16.34 5.29 0.09 -10.95 16 9 N -0.74 -10.33 5.56 -65.22 -0.36 -10.70 16 10 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 11 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 12 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 13 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 N -0.36 -3.49 4.01 -63.88 -0.26 -3.74 16 22 C 0.10 0.64 11.27 59.85 0.67 1.31 16 23 N -0.29 -3.23 12.58 33.67 0.42 -2.80 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.73 7.24 -51.93 -0.38 0.35 16 30 H 0.40 3.36 8.48 -40.82 -0.35 3.01 16 31 H 0.39 4.40 8.49 -40.82 -0.35 4.06 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.49 7.15 -51.93 -0.37 0.12 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -34.59 352.13 -7.91 -42.50 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.48 Total: 1.03 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.98 Total: -2.94 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.17 Total: -51.31 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.59 -7.91 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285281021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.231 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds