Wall clock time and date at job start Tue Mar 31 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34422 * 124.34891 * 2 1 4 4 O 1.21281 * 124.94335 * 0.40372 * 3 2 1 5 5 C 1.51288 * 110.11239 * 180.43261 * 3 2 1 6 6 C 1.54756 * 104.23634 * 16.18627 * 5 3 2 7 7 C 1.46758 * 124.34865 * 180.02562 * 2 1 3 8 8 H 1.09007 * 110.24780 * 282.04674 * 7 2 1 9 9 C 1.52999 * 110.24989 * 43.96072 * 7 2 1 10 10 C 1.50698 * 109.47379 * 184.21646 * 9 7 2 11 11 O 1.21275 * 120.00350 * 6.39386 * 10 9 7 12 12 N 1.34780 * 119.99792 * 186.66060 * 10 9 7 13 13 C 1.46503 * 119.99857 * 179.72592 * 12 10 9 14 14 C 1.53001 * 109.47024 * 178.58424 * 13 12 10 15 15 C 1.50697 * 115.54826 * 65.23731 * 14 13 12 16 16 H 1.08002 * 120.00198 * 264.68334 * 15 14 13 17 17 C 1.37877 * 119.99951 * 84.69284 * 15 14 13 18 18 N 1.31509 * 120.00421 * 353.96337 * 17 15 14 19 19 Si 1.86802 * 119.99799 * 173.96831 * 17 15 14 20 20 H 1.48498 * 109.47607 * 59.99412 * 19 17 15 21 21 H 1.48502 * 109.47354 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47028 * 299.99445 * 19 17 15 23 23 C 1.53000 * 117.49466 * 279.56537 * 14 13 12 24 24 C 1.53001 * 117.49807 * 210.90685 * 14 13 12 25 25 H 1.09003 * 109.46646 * 268.17952 * 1 2 3 26 26 H 1.09000 * 109.46837 * 28.17754 * 1 2 3 27 27 H 1.08995 * 109.47301 * 148.17941 * 1 2 3 28 28 H 1.09001 * 110.48597 * 134.93042 * 5 3 2 29 29 H 1.09007 * 110.48281 * 257.57192 * 5 3 2 30 30 H 1.09004 * 111.04702 * 217.19029 * 6 5 3 31 31 H 1.08999 * 110.95152 * 93.38701 * 6 5 3 32 32 H 1.09004 * 109.46945 * 64.21348 * 9 7 2 33 33 H 1.08998 * 109.46985 * 304.22166 * 9 7 2 34 34 H 0.96994 * 119.99890 * 359.73156 * 12 10 9 35 35 H 1.09005 * 109.47141 * 298.58329 * 13 12 10 36 36 H 1.08997 * 109.46959 * 58.58554 * 13 12 10 37 37 H 0.96997 * 120.00477 * 184.99567 * 18 17 15 38 38 H 1.08998 * 117.50270 * 359.97438 * 23 14 13 39 39 H 1.09003 * 117.49310 * 145.02690 * 23 14 13 40 40 H 1.08996 * 117.49617 * 214.98138 * 24 14 13 41 41 H 1.09002 * 117.49760 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2443 0.0070 5 6 3.6898 0.7378 -0.0107 6 6 3.7018 -0.7504 -0.4353 7 6 2.2930 -1.2117 -0.0005 8 1 2.3297 -1.6440 0.9994 9 6 1.7388 -2.2314 -0.9974 10 6 2.5384 -3.5057 -0.9096 11 8 3.3839 -3.6330 -0.0495 12 7 2.3176 -4.5019 -1.7902 13 6 3.0992 -5.7383 -1.7085 14 6 2.6300 -6.7108 -2.7925 15 6 2.8761 -6.2695 -4.2123 16 1 2.0959 -5.7668 -4.7645 17 6 4.0974 -6.5076 -4.8062 18 7 5.0854 -7.0113 -4.0995 19 14 4.3487 -6.1144 -6.6151 20 1 4.1146 -4.6660 -6.8441 21 1 5.7387 -6.4589 -7.0081 22 1 3.3927 -6.9054 -7.4310 23 6 1.3622 -7.5207 -2.5141 24 6 2.7301 -8.2073 -2.4905 25 1 -0.3633 -0.0326 1.0272 26 1 -0.3633 0.9059 -0.4853 27 1 -0.3633 -0.8732 -0.5418 28 1 4.2324 1.3460 -0.7344 29 1 4.1198 0.8527 0.9843 30 1 4.4752 -1.3033 0.0979 31 1 3.8284 -0.8470 -1.5136 32 1 1.8089 -1.8273 -2.0074 33 1 0.6953 -2.4401 -0.7613 34 1 1.6414 -4.4001 -2.4780 35 1 4.1550 -5.5113 -1.8564 36 1 2.9591 -6.1925 -0.7276 37 1 5.9645 -7.1114 -4.4970 38 1 0.8626 -7.3612 -1.5586 39 1 0.7063 -7.7348 -3.3581 40 1 2.9736 -8.8727 -3.3187 41 1 3.1306 -8.4991 -1.5196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597611607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:16 Heat of formation + Delta-G solvation = -72.341467 kcal Electronic energy + Delta-G solvation = -22027.945062 eV Core-core repulsion = 18714.452369 eV Total energy + Delta-G solvation = -3313.492693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67736 -40.40211 -38.51426 -37.61091 -34.87500 -33.94741 -33.68785 -32.15000 -28.28248 -27.53502 -27.27582 -25.59100 -22.99029 -22.68966 -21.29991 -20.87089 -20.32346 -18.56344 -17.98427 -17.47553 -17.19427 -16.69145 -16.52696 -16.30240 -16.03141 -15.50938 -15.00653 -14.75689 -14.56882 -14.47323 -14.01154 -13.80963 -13.58736 -13.43543 -13.23807 -13.08842 -12.90838 -12.79156 -12.70149 -12.38023 -12.02719 -11.96483 -11.90600 -11.44782 -10.97138 -10.85131 -10.78215 -10.42904 -10.02766 -9.76181 -9.75221 -8.07715 -6.20625 1.44841 1.47395 1.49885 1.52743 1.79202 1.92673 2.43474 2.54308 3.21212 3.35267 3.49382 3.54316 3.72788 4.02025 4.03889 4.25363 4.30826 4.37688 4.46647 4.54118 4.58993 4.65022 4.69134 4.78134 4.84294 4.85360 4.91619 5.02324 5.07656 5.12980 5.17543 5.30589 5.50943 5.62159 5.64525 5.73098 5.81322 6.04354 6.39396 6.82619 6.88299 7.09953 7.45223 7.49421 8.99510 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.003991 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.238921 B = 7014.853050 C = 7555.654244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.614 5.614 3 C 0.509 3.491 4 O -0.582 6.582 5 C -0.148 4.148 6 C -0.122 4.122 7 C 0.151 3.849 8 H 0.089 0.911 9 C -0.139 4.139 10 C 0.509 3.491 11 O -0.587 6.587 12 N -0.700 5.700 13 C 0.180 3.820 14 C 0.007 3.993 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.028 3.972 18 N -0.907 5.907 19 Si 0.946 3.054 20 H -0.270 1.270 21 H -0.294 1.294 22 H -0.272 1.272 23 C -0.176 4.176 24 C -0.164 4.164 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.410 0.590 35 H 0.031 0.969 36 H 0.036 0.964 37 H 0.258 0.742 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 9.598 6.063 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.346 5.346 3 C 0.299 3.701 4 O -0.463 6.463 5 C -0.188 4.188 6 C -0.160 4.160 7 C 0.047 3.953 8 H 0.107 0.893 9 C -0.179 4.179 10 C 0.296 3.704 11 O -0.469 6.469 12 N -0.349 5.349 13 C 0.056 3.944 14 C 0.007 3.993 15 C -0.542 4.542 16 H 0.082 0.918 17 C -0.173 4.173 18 N -0.545 5.545 19 Si 0.772 3.228 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.198 1.198 23 C -0.213 4.213 24 C -0.202 4.202 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.246 0.754 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.630 9.942 6.630 14.178 hybrid contribution 0.342 -0.219 -1.287 1.350 sum -7.288 9.723 5.343 13.274 Atomic orbital electron populations 1.21808 0.77003 1.04097 1.02927 1.48358 1.07379 1.06767 1.72120 1.21365 0.90776 0.83798 0.74166 1.90681 1.79811 1.22699 1.53110 1.22404 0.92821 0.97649 1.05891 1.22667 0.96270 0.94301 1.02728 1.21374 0.90080 0.83973 0.99852 0.89282 1.21915 1.01775 0.91584 1.02628 1.20875 0.83449 0.85339 0.80750 1.90658 1.36367 1.82230 1.37618 1.45875 1.39917 1.16052 1.33103 1.20515 0.93902 0.84287 0.95724 1.19068 0.97091 0.89399 0.93791 1.20637 0.98810 1.38525 0.96232 0.91770 1.25645 0.96231 0.94513 1.00920 1.70081 1.01432 1.45021 1.37926 0.85815 0.76694 0.78800 0.81489 1.19515 1.21964 1.19763 1.23007 0.90484 1.06378 1.01441 1.22441 1.00406 0.97669 0.99695 0.91648 0.91339 0.88269 0.87065 0.86407 0.88864 0.90073 0.86972 0.85535 0.75416 0.95093 0.94568 0.93263 0.89119 0.89736 0.92098 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.74 127.77 1.37 2.65 16 2 N -0.61 -12.42 3.18 -818.89 -2.61 -15.03 16 3 C 0.51 12.60 8.02 87.90 0.71 13.31 16 4 O -0.58 -18.92 17.57 -3.03 -0.05 -18.97 16 5 C -0.15 -2.81 6.86 30.63 0.21 -2.60 16 6 C -0.12 -2.50 5.88 31.70 0.19 -2.32 16 7 C 0.15 3.04 2.94 45.45 0.13 3.17 16 8 H 0.09 1.93 7.85 -2.38 -0.02 1.91 16 9 C -0.14 -2.68 4.91 29.85 0.15 -2.53 16 10 C 0.51 15.16 7.56 87.66 0.66 15.83 16 11 O -0.59 -21.76 15.08 -3.01 -0.05 -21.81 16 12 N -0.70 -23.03 5.48 -463.05 -2.54 -25.57 16 13 C 0.18 7.55 5.50 86.38 0.48 8.02 16 14 C 0.01 0.31 1.37 -52.93 -0.07 0.24 16 15 C -0.50 -24.31 8.64 25.60 0.22 -24.09 16 16 H 0.06 2.97 7.82 -2.91 -0.02 2.94 16 17 C 0.03 1.41 5.39 84.66 0.46 1.87 16 18 N -0.91 -49.50 12.93 21.45 0.28 -49.23 16 19 Si 0.95 40.58 29.54 68.60 2.03 42.61 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 C -0.18 -6.50 9.96 30.62 0.30 -6.19 16 24 C -0.16 -7.11 9.45 30.62 0.29 -6.82 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.19 7.89 -2.39 -0.02 1.17 16 27 H 0.10 1.02 6.32 -2.39 -0.02 1.00 16 28 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.09 2.11 7.81 -2.39 -0.02 2.09 16 31 H 0.08 1.68 7.83 -2.39 -0.02 1.67 16 32 H 0.11 1.93 8.02 -2.39 -0.02 1.91 16 33 H 0.13 1.73 6.66 -2.39 -0.02 1.71 16 34 H 0.41 11.85 8.37 -92.71 -0.78 11.08 16 35 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.04 1.50 8.09 -2.39 -0.02 1.48 16 37 H 0.26 13.74 8.32 -92.71 -0.77 12.96 16 38 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -65.38 342.43 2.40 -62.97 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.25 Total: 24.47 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.09 Total: 0.55 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -4.87 Total: -89.82 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.10 Total: -40.78 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -65.38 2.40 -62.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597611607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.369 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds