Wall clock time and date at job start Tue Mar 31 2020 01:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46824 * 124.33354 * 2 1 4 4 C 1.54473 * 105.44352 * 197.00425 * 3 2 1 5 5 H 1.09001 * 110.97625 * 92.76708 * 4 3 2 6 6 C 1.50697 * 110.97189 * 216.49366 * 4 3 2 7 7 O 1.21287 * 119.99760 * 356.90885 * 6 4 3 8 8 N 1.34770 * 120.00686 * 176.90983 * 6 4 3 9 9 C 1.46931 * 120.62942 * 359.97438 * 8 6 4 10 10 C 1.53187 * 108.77858 * 233.58820 * 9 8 6 11 11 C 1.53036 * 109.33909 * 305.34763 * 10 9 8 12 12 C 1.53109 * 109.50477 * 61.34678 * 11 10 9 13 13 H 1.09001 * 109.48443 * 58.61442 * 12 11 10 14 14 C 1.50700 * 109.51755 * 178.68356 * 12 11 10 15 15 H 1.08001 * 119.99719 * 119.87412 * 14 12 11 16 16 C 1.37879 * 120.00002 * 299.87047 * 14 12 11 17 17 N 1.31510 * 119.99891 * 179.97438 * 16 14 12 18 18 Si 1.86797 * 119.99962 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47366 * 89.99562 * 18 16 14 20 20 H 1.48502 * 109.47187 * 209.99707 * 18 16 14 21 21 H 1.48500 * 109.47397 * 329.99500 * 18 16 14 22 22 C 1.46925 * 120.63591 * 179.97438 * 8 6 4 23 23 C 1.54629 * 101.79917 * 334.63005 * 4 3 2 24 24 C 1.34420 * 124.34954 * 180.02562 * 2 1 3 25 25 O 1.21281 * 124.94346 * 359.61946 * 24 2 1 26 26 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46888 * 299.98196 * 1 2 3 28 28 H 1.08995 * 109.47349 * 59.98058 * 1 2 3 29 29 H 1.08997 * 110.23839 * 78.02358 * 3 2 1 30 30 H 1.08999 * 110.27957 * 316.00330 * 3 2 1 31 31 H 1.09004 * 109.58377 * 113.79779 * 9 8 6 32 32 H 1.09003 * 109.70376 * 353.44826 * 9 8 6 33 33 H 1.09002 * 109.49796 * 65.31697 * 10 9 8 34 34 H 1.09000 * 109.49812 * 185.38420 * 10 9 8 35 35 H 1.08997 * 109.46472 * 181.39933 * 11 10 9 36 36 H 1.09003 * 109.46509 * 301.36375 * 11 10 9 37 37 H 0.97003 * 120.00166 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.58986 * 246.19918 * 22 8 6 39 39 H 1.08997 * 109.58553 * 6.48618 * 22 8 6 40 40 H 1.09006 * 110.48957 * 143.45900 * 23 4 3 41 41 H 1.09000 * 110.48699 * 265.97080 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7009 0.7490 -0.4354 5 1 3.8274 0.8458 -1.5137 6 6 4.7717 1.5121 0.3009 7 8 4.4647 2.3988 1.0694 8 7 6.0703 1.2093 0.1056 9 6 6.4578 0.1374 -0.8216 10 6 7.3686 -0.8483 -0.0830 11 6 8.5488 -0.0885 0.5268 12 6 8.0289 0.9390 1.5358 13 1 7.4589 0.4294 2.3127 14 6 9.1926 1.6650 2.1601 15 1 9.2802 2.7362 2.0545 16 6 10.1454 0.9616 2.8662 17 7 11.1612 1.5951 3.4106 18 14 9.9941 -0.8913 3.0484 19 1 10.6947 -1.5583 1.9217 20 1 10.6078 -1.3142 4.3328 21 1 8.5594 -1.2745 3.0355 22 6 7.1256 1.9446 0.8158 23 6 3.6898 -0.7378 -0.0109 24 6 2.2235 -1.1098 -0.0005 25 8 1.7947 -2.2442 0.0056 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5135 0.8901 28 1 -0.3634 0.5141 -0.8898 29 1 2.3306 1.6435 1.0004 30 1 1.8989 1.9392 -0.7102 31 1 6.9929 0.5640 -1.6701 32 1 5.5674 -0.3824 -1.1752 33 1 6.8048 -1.3410 0.7092 34 1 7.7402 -1.5956 -0.7840 35 1 9.2113 -0.7914 1.0318 36 1 9.0978 0.4243 -0.2631 37 1 11.8317 1.1002 3.9070 38 1 7.7152 2.5187 0.1012 39 1 6.6744 2.6196 1.5431 40 1 4.2325 -1.3455 -0.7350 41 1 4.1216 -0.8540 0.9831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:56 Heat of formation + Delta-G solvation = -61.237725 kcal Electronic energy + Delta-G solvation = -22862.563437 eV Core-core repulsion = 19549.552238 eV Total energy + Delta-G solvation = -3313.011198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05595 -39.48118 -37.29610 -36.30323 -33.92242 -32.90431 -31.81228 -30.60194 -27.97762 -27.27492 -25.31677 -25.12327 -22.70511 -21.77082 -20.24081 -19.60489 -18.55792 -17.64571 -16.92215 -16.75636 -16.17696 -15.68832 -15.11773 -15.00396 -14.62917 -14.19182 -13.90161 -13.70163 -13.63323 -13.16951 -13.11039 -12.69735 -12.66035 -12.51102 -12.48215 -12.33037 -11.69871 -11.56259 -11.38991 -11.19639 -10.74153 -10.38396 -10.21551 -10.17256 -9.90175 -9.67526 -9.39146 -9.07928 -8.95330 -8.61305 -8.22268 -6.14115 -4.14730 2.36535 2.67100 2.73678 3.20379 3.20860 3.33286 3.35120 4.00486 4.13922 4.34404 4.47409 4.65431 4.83002 4.99951 5.03485 5.09609 5.16124 5.24653 5.27529 5.34302 5.44219 5.46987 5.54025 5.69701 5.80674 5.90469 5.98689 6.10558 6.21897 6.30186 6.44153 6.58069 6.65647 6.75773 6.82245 7.06036 7.38630 7.65606 7.69044 7.93262 8.30453 8.42553 8.88821 9.47252 10.98822 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.004630 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.668228 B = 6046.014811 C = 6436.377973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.624 5.624 3 C 0.118 3.882 4 C -0.124 4.124 5 H 0.116 0.884 6 C 0.521 3.479 7 O -0.541 6.541 8 N -0.601 5.601 9 C 0.103 3.897 10 C -0.140 4.140 11 C -0.123 4.123 12 C 0.005 3.995 13 H 0.030 0.970 14 C -0.516 4.516 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.297 1.297 21 H -0.266 1.266 22 C 0.127 3.873 23 C -0.147 4.147 24 C 0.521 3.479 25 O -0.533 6.533 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.265 0.735 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.325 -3.382 -11.297 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.359 5.359 3 C -0.005 4.005 4 C -0.145 4.145 5 H 0.134 0.866 6 C 0.308 3.692 7 O -0.418 6.418 8 N -0.333 5.333 9 C -0.020 4.020 10 C -0.179 4.179 11 C -0.160 4.160 12 C -0.014 4.014 13 H 0.048 0.952 14 C -0.554 4.554 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.205 1.205 20 H -0.225 1.225 21 H -0.191 1.191 22 C 0.007 3.993 23 C -0.187 4.187 24 C 0.308 3.692 25 O -0.410 6.410 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.628 -3.503 -10.773 20.121 hybrid contribution 0.252 -1.010 0.075 1.044 sum -16.376 -4.513 -10.698 20.075 Atomic orbital electron populations 1.21564 0.77869 1.03707 1.01680 1.48216 1.06691 1.07434 1.73562 1.22005 0.87799 0.86626 1.04078 1.22233 0.94708 0.95281 1.02327 0.86611 1.19932 0.83177 0.83741 0.82385 1.90702 1.81595 1.32248 1.37302 1.48288 1.05793 1.35619 1.43573 1.21893 0.99234 0.88736 0.92174 1.22016 0.98221 0.97685 0.99940 1.22005 0.95905 0.98424 0.99711 1.19473 0.95297 0.93232 0.93419 0.95169 1.20890 1.05825 0.95868 1.32848 0.90579 1.24977 0.94935 0.98265 0.94778 1.69888 1.12321 1.36113 1.35218 0.86837 0.78665 0.86243 0.76435 1.20542 1.22474 1.19099 1.21817 0.87012 0.94847 0.95648 1.22505 0.95190 0.95153 1.05899 1.20811 0.89045 0.84354 0.74964 1.90725 1.78542 1.21043 1.50710 0.89919 0.91878 0.91964 0.88801 0.89697 0.91183 0.90213 0.91983 0.91533 0.93123 0.91860 0.92542 0.91727 0.89453 0.86834 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.14 59.85 0.67 1.42 16 2 N -0.62 -6.56 3.33 -180.25 -0.60 -7.16 16 3 C 0.12 1.16 6.69 -3.09 -0.02 1.14 16 4 C -0.12 -1.27 2.55 -90.14 -0.23 -1.50 16 5 H 0.12 0.90 7.94 -51.93 -0.41 0.49 16 6 C 0.52 7.62 7.00 -10.99 -0.08 7.54 16 7 O -0.54 -9.80 14.94 5.55 0.08 -9.72 16 8 N -0.60 -9.19 2.97 -172.79 -0.51 -9.70 16 9 C 0.10 1.25 6.00 -3.71 -0.02 1.23 16 10 C -0.14 -2.04 6.08 -26.62 -0.16 -2.20 16 11 C -0.12 -2.37 4.66 -26.66 -0.12 -2.49 16 12 C 0.01 0.12 1.84 -91.63 -0.17 -0.05 16 13 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 14 C -0.52 -13.85 9.15 -34.44 -0.31 -14.17 16 15 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 17 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 18 Si 0.89 21.33 24.39 -169.99 -4.15 17.18 16 19 H -0.28 -6.44 6.86 56.52 0.39 -6.05 16 20 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 22 C 0.13 2.43 5.65 -3.73 -0.02 2.41 16 23 C -0.15 -1.58 5.31 -26.74 -0.14 -1.72 16 24 C 0.52 6.59 8.03 -10.86 -0.09 6.50 16 25 O -0.53 -8.60 17.35 5.56 0.10 -8.50 16 26 H 0.08 0.73 7.53 -51.93 -0.39 0.34 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.73 4.02 -51.93 -0.21 0.52 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.82 7.00 -51.93 -0.36 1.46 16 40 H 0.11 1.01 6.55 -51.93 -0.34 0.67 16 41 H 0.11 1.35 7.89 -51.93 -0.41 0.94 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -33.21 316.82 -6.35 -39.56 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.02 Total: -0.41 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.80 Total: 0.04 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.34 Total: -42.93 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.18 Total: -18.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.15 Total: 17.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.21 -6.35 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.675 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds