Wall clock time and date at job start Tue Mar 31 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46824 * 124.33354 * 2 1 4 4 C 1.54473 * 105.44352 * 197.00425 * 3 2 1 5 5 H 1.09001 * 110.97625 * 92.76708 * 4 3 2 6 6 C 1.50697 * 110.97189 * 216.49366 * 4 3 2 7 7 O 1.21287 * 119.99760 * 356.90885 * 6 4 3 8 8 N 1.34770 * 120.00686 * 176.90983 * 6 4 3 9 9 C 1.46931 * 120.62942 * 359.97438 * 8 6 4 10 10 C 1.53187 * 108.77858 * 233.58820 * 9 8 6 11 11 C 1.53036 * 109.33909 * 305.34763 * 10 9 8 12 12 C 1.53109 * 109.50477 * 61.34678 * 11 10 9 13 13 H 1.09001 * 109.48443 * 58.61442 * 12 11 10 14 14 C 1.50700 * 109.51755 * 178.68356 * 12 11 10 15 15 H 1.08001 * 119.99719 * 119.87412 * 14 12 11 16 16 C 1.37879 * 120.00002 * 299.87047 * 14 12 11 17 17 N 1.31510 * 119.99891 * 179.97438 * 16 14 12 18 18 Si 1.86797 * 119.99962 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47366 * 89.99562 * 18 16 14 20 20 H 1.48502 * 109.47187 * 209.99707 * 18 16 14 21 21 H 1.48500 * 109.47397 * 329.99500 * 18 16 14 22 22 C 1.46925 * 120.63591 * 179.97438 * 8 6 4 23 23 C 1.54629 * 101.79917 * 334.63005 * 4 3 2 24 24 C 1.34420 * 124.34954 * 180.02562 * 2 1 3 25 25 O 1.21281 * 124.94346 * 359.61946 * 24 2 1 26 26 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46888 * 299.98196 * 1 2 3 28 28 H 1.08995 * 109.47349 * 59.98058 * 1 2 3 29 29 H 1.08997 * 110.23839 * 78.02358 * 3 2 1 30 30 H 1.08999 * 110.27957 * 316.00330 * 3 2 1 31 31 H 1.09004 * 109.58377 * 113.79779 * 9 8 6 32 32 H 1.09003 * 109.70376 * 353.44826 * 9 8 6 33 33 H 1.09002 * 109.49796 * 65.31697 * 10 9 8 34 34 H 1.09000 * 109.49812 * 185.38420 * 10 9 8 35 35 H 1.08997 * 109.46472 * 181.39933 * 11 10 9 36 36 H 1.09003 * 109.46509 * 301.36375 * 11 10 9 37 37 H 0.97003 * 120.00166 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.58986 * 246.19918 * 22 8 6 39 39 H 1.08997 * 109.58553 * 6.48618 * 22 8 6 40 40 H 1.09006 * 110.48957 * 143.45900 * 23 4 3 41 41 H 1.09000 * 110.48699 * 265.97080 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7009 0.7490 -0.4354 5 1 3.8274 0.8458 -1.5137 6 6 4.7717 1.5121 0.3009 7 8 4.4647 2.3988 1.0694 8 7 6.0703 1.2093 0.1056 9 6 6.4578 0.1374 -0.8216 10 6 7.3686 -0.8483 -0.0830 11 6 8.5488 -0.0885 0.5268 12 6 8.0289 0.9390 1.5358 13 1 7.4589 0.4294 2.3127 14 6 9.1926 1.6650 2.1601 15 1 9.2802 2.7362 2.0545 16 6 10.1454 0.9616 2.8662 17 7 11.1612 1.5951 3.4106 18 14 9.9941 -0.8913 3.0484 19 1 10.6947 -1.5583 1.9217 20 1 10.6078 -1.3142 4.3328 21 1 8.5594 -1.2745 3.0355 22 6 7.1256 1.9446 0.8158 23 6 3.6898 -0.7378 -0.0109 24 6 2.2235 -1.1098 -0.0005 25 8 1.7947 -2.2442 0.0056 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5135 0.8901 28 1 -0.3634 0.5141 -0.8898 29 1 2.3306 1.6435 1.0004 30 1 1.8989 1.9392 -0.7102 31 1 6.9929 0.5640 -1.6701 32 1 5.5674 -0.3824 -1.1752 33 1 6.8048 -1.3410 0.7092 34 1 7.7402 -1.5956 -0.7840 35 1 9.2113 -0.7914 1.0318 36 1 9.0978 0.4243 -0.2631 37 1 11.8317 1.1002 3.9070 38 1 7.7152 2.5187 0.1012 39 1 6.6744 2.6196 1.5431 40 1 4.2325 -1.3455 -0.7350 41 1 4.1216 -0.8540 0.9831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:55 Heat of formation + Delta-G solvation = -85.270306 kcal Electronic energy + Delta-G solvation = -22863.605567 eV Core-core repulsion = 19549.552238 eV Total energy + Delta-G solvation = -3314.053329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.04508 -40.61575 -38.62773 -37.32575 -35.45895 -34.12505 -33.30104 -32.09908 -28.88150 -28.17528 -26.87190 -26.45685 -23.75647 -23.18036 -21.56363 -20.62908 -19.78070 -18.92962 -18.50855 -17.76764 -17.29785 -16.72641 -16.63022 -16.16470 -15.93974 -15.40052 -15.11572 -14.93648 -14.75521 -14.54964 -14.24411 -14.15261 -13.97356 -13.64560 -13.41312 -13.16345 -12.97658 -12.84338 -12.48615 -12.39781 -12.36786 -12.07165 -11.84454 -11.48120 -11.25215 -11.19030 -11.04444 -10.67883 -10.63068 -9.78001 -9.54092 -8.31464 -6.36146 1.28394 1.36197 1.43280 1.45556 1.55916 1.85912 2.13496 2.31049 3.04118 3.09796 3.29981 3.59410 3.83694 3.93102 4.07996 4.12352 4.26981 4.34958 4.36701 4.42218 4.52422 4.57684 4.63859 4.68204 4.77502 4.78812 4.86498 4.90309 4.95909 5.01547 5.13508 5.18225 5.40520 5.44450 5.46351 5.66821 5.76154 5.98299 6.26449 6.50565 6.70944 7.03310 7.14902 7.29791 8.85234 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.004630 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.668228 B = 6046.014811 C = 6436.377973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.620 5.620 3 C 0.119 3.881 4 C -0.108 4.108 5 H 0.158 0.842 6 C 0.519 3.481 7 O -0.583 6.583 8 N -0.603 5.603 9 C 0.101 3.899 10 C -0.137 4.137 11 C -0.123 4.123 12 C 0.007 3.993 13 H 0.013 0.987 14 C -0.521 4.521 15 H 0.035 0.965 16 C 0.014 3.986 17 N -0.949 5.949 18 Si 0.953 3.047 19 H -0.258 1.258 20 H -0.305 1.305 21 H -0.252 1.252 22 C 0.139 3.861 23 C -0.143 4.143 24 C 0.514 3.486 25 O -0.575 6.575 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.266 0.734 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.141 0.859 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.145 -5.282 -14.173 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.353 5.353 3 C -0.004 4.004 4 C -0.130 4.130 5 H 0.176 0.824 6 C 0.308 3.692 7 O -0.463 6.463 8 N -0.334 5.334 9 C -0.021 4.021 10 C -0.175 4.175 11 C -0.160 4.160 12 C -0.012 4.012 13 H 0.031 0.969 14 C -0.559 4.559 15 H 0.053 0.947 16 C -0.183 4.183 17 N -0.589 5.589 18 Si 0.780 3.220 19 H -0.183 1.183 20 H -0.233 1.233 21 H -0.176 1.176 22 C 0.017 3.983 23 C -0.183 4.183 24 C 0.303 3.697 25 O -0.455 6.455 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.481 -5.391 -13.689 23.622 hybrid contribution 0.783 -0.254 1.022 1.312 sum -17.698 -5.645 -12.667 22.484 Atomic orbital electron populations 1.21761 0.76542 1.03563 1.03517 1.48364 1.07688 1.07068 1.72217 1.22037 0.87799 0.86735 1.03823 1.22224 0.92884 0.94007 1.03838 0.82435 1.20668 0.83491 0.83293 0.81750 1.90694 1.82208 1.34308 1.39125 1.48289 1.05243 1.36154 1.43728 1.22199 1.00857 0.87517 0.91478 1.22015 0.96417 0.98331 1.00693 1.21878 0.97765 0.97544 0.98839 1.19362 0.93659 0.94205 0.94022 0.96876 1.21253 1.07403 0.94496 1.32784 0.94702 1.25848 0.94512 1.03415 0.94555 1.70046 1.13698 1.38239 1.36944 0.85790 0.79459 0.80273 0.76511 1.18341 1.23281 1.17603 1.21312 0.87645 0.94079 0.95303 1.22515 0.94229 0.95565 1.06013 1.21097 0.89969 0.84123 0.74530 1.90706 1.79309 1.22625 1.52882 0.91043 0.90864 0.89327 0.90951 0.86756 0.89118 0.86133 0.92322 0.87867 0.94790 0.91621 0.92535 0.91661 0.92363 0.84141 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 11.14 127.77 1.42 2.60 16 2 N -0.62 -11.28 3.33 -842.78 -2.81 -14.09 16 3 C 0.12 1.97 6.69 86.82 0.58 2.55 16 4 C -0.11 -1.78 2.55 -10.49 -0.03 -1.81 16 5 H 0.16 1.41 7.94 -2.39 -0.02 1.39 16 6 C 0.52 14.02 7.00 87.66 0.61 14.64 16 7 O -0.58 -20.95 14.94 -3.05 -0.05 -21.00 16 8 N -0.60 -17.01 2.97 -818.98 -2.43 -19.45 16 9 C 0.10 1.96 6.00 86.36 0.52 2.47 16 10 C -0.14 -3.35 6.08 30.67 0.19 -3.17 16 11 C -0.12 -4.46 4.66 30.64 0.14 -4.32 16 12 C 0.01 0.31 1.84 -11.45 -0.02 0.29 16 13 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 14 C -0.52 -29.13 9.15 25.60 0.23 -28.89 16 15 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 16 C 0.01 0.80 5.45 84.66 0.46 1.26 16 17 N -0.95 -59.06 13.96 21.45 0.30 -58.77 16 18 Si 0.95 44.37 24.39 68.60 1.67 46.05 16 19 H -0.26 -11.08 6.86 99.48 0.68 -10.40 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.25 -11.01 6.53 99.48 0.65 -10.36 16 22 C 0.14 5.35 5.65 86.35 0.49 5.84 16 23 C -0.14 -2.54 5.31 30.59 0.16 -2.38 16 24 C 0.51 11.70 8.03 87.90 0.71 12.41 16 25 O -0.57 -17.62 17.35 -3.03 -0.05 -17.67 16 26 H 0.07 1.16 7.53 -2.39 -0.02 1.14 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.07 1.57 7.01 -2.39 -0.02 1.55 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.12 1.40 4.02 -2.39 -0.01 1.40 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.03 1.35 3.27 -2.39 -0.01 1.34 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.06 2.55 7.00 -2.39 -0.02 2.53 16 40 H 0.14 1.71 6.55 -2.38 -0.02 1.70 16 41 H 0.10 2.10 7.89 -2.39 -0.02 2.08 16 Total: -1.00 -77.97 316.82 3.05 -74.92 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.95 Total: 8.52 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 5.47 Total: 1.49 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -4.95 Total: -92.30 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.10 Total: -38.67 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.67 Total: 46.05 kcal Total: -77.97 3.05 -74.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.349 kcal (2) G-P(sol) polarization free energy of solvation -77.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds