Wall clock time and date at job start Tue Mar 31 2020 01:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 120.00263 * 2 1 4 4 O 1.21737 * 119.99997 * 185.35889 * 3 2 1 5 5 C 1.41795 * 119.99661 * 5.35672 * 3 2 1 6 6 C 1.33454 * 118.78915 * 212.15772 * 5 3 2 7 7 O 1.34346 * 123.08586 * 180.11477 * 6 5 3 8 8 C 1.45360 * 117.54209 * 344.22017 * 7 6 5 9 9 C 1.53480 * 108.26346 * 47.22870 * 8 7 6 10 10 C 1.50419 * 118.79055 * 32.42800 * 5 3 2 11 11 C 1.46501 * 120.00049 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.64380 * 179.29890 * 11 2 1 13 13 C 1.55158 * 110.87203 * 302.55391 * 11 2 1 14 14 C 1.54902 * 101.58180 * 153.93643 * 13 11 2 15 15 N 1.47427 * 104.83476 * 322.98630 * 14 13 11 16 16 C 1.36938 * 125.65225 * 204.17077 * 15 14 13 17 17 H 1.07999 * 119.99682 * 179.97438 * 16 15 14 18 18 C 1.38806 * 119.99798 * 359.95429 * 16 15 14 19 19 N 1.31626 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00038 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46876 * 89.99699 * 20 18 16 22 22 H 1.48498 * 109.47359 * 209.99929 * 20 18 16 23 23 H 1.48499 * 109.47034 * 330.00326 * 20 18 16 24 24 C 1.47023 * 108.69899 * 24.12982 * 15 14 13 25 25 H 1.09003 * 109.46969 * 294.30131 * 1 2 3 26 26 H 1.09003 * 109.46800 * 54.29541 * 1 2 3 27 27 H 1.08993 * 109.47349 * 174.29475 * 1 2 3 28 28 H 1.08004 * 118.45880 * 0.39056 * 6 5 3 29 29 H 1.08994 * 109.70398 * 287.52876 * 8 7 6 30 30 H 1.09006 * 109.73293 * 166.93326 * 8 7 6 31 31 H 1.08997 * 109.70577 * 177.60621 * 9 8 7 32 32 H 1.08992 * 109.74660 * 57.00336 * 9 8 7 33 33 H 1.08998 * 109.45514 * 282.36308 * 10 5 3 34 34 H 1.09004 * 109.45175 * 42.31671 * 10 5 3 35 35 H 1.09000 * 110.99920 * 272.00630 * 13 11 2 36 36 H 1.08995 * 111.00718 * 35.85649 * 13 11 2 37 37 H 1.09000 * 110.36859 * 204.15136 * 14 13 11 38 38 H 1.08999 * 110.46334 * 81.87226 * 14 13 11 39 39 H 0.96995 * 119.99976 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.88267 * 239.52352 * 24 15 14 41 41 H 1.08996 * 109.88202 * 118.36085 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3523 1.1694 -0.0985 5 6 1.4346 2.3925 0.1146 6 6 1.9207 3.4731 -0.4994 7 8 1.3257 4.6765 -0.4466 8 6 -0.0547 4.7245 0.0063 9 6 -0.1722 3.8789 1.2818 10 6 0.1704 2.4279 0.9290 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0916 -0.0120 13 6 1.7983 -2.1370 1.2229 14 6 2.0948 -3.5647 0.7004 15 7 1.7093 -3.5336 -0.7223 16 6 1.3493 -4.6190 -1.4756 17 1 1.0824 -4.4909 -2.5142 18 6 1.3280 -5.8840 -0.9044 19 7 1.6533 -6.0401 0.3615 20 14 0.8377 -7.3648 -1.9322 21 1 2.0457 -7.9454 -2.5716 22 1 0.2011 -8.3840 -1.0597 23 1 -0.1234 -6.9421 -2.9823 24 6 1.7744 -2.1440 -1.1980 25 1 -0.3633 0.4229 0.9366 26 1 -0.3633 0.5998 -0.8345 27 1 -0.3633 -1.0225 -0.1022 28 1 2.8329 3.3746 -1.0692 29 1 -0.7089 4.3187 -0.7653 30 1 -0.3358 5.7554 0.2216 31 1 -1.1907 3.9331 1.6662 32 1 0.5246 4.2485 2.0341 33 1 -0.6453 1.9921 0.3521 34 1 0.3129 1.8556 1.8457 35 1 2.4176 -1.9013 2.0884 36 1 0.7405 -2.0186 1.4576 37 1 1.4955 -4.2982 1.2398 38 1 3.1555 -3.7947 0.8010 39 1 1.6388 -6.9241 0.7604 40 1 0.7952 -1.8296 -1.5592 41 1 2.5111 -2.0598 -1.9969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032941237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:54 Heat of formation + Delta-G solvation = -11.661294 kcal Electronic energy + Delta-G solvation = -22585.473983 eV Core-core repulsion = 19274.612580 eV Total energy + Delta-G solvation = -3310.861403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.85265 -39.31999 -37.28982 -35.19009 -34.00555 -32.19473 -31.56924 -29.20399 -27.67303 -26.98161 -25.58817 -24.83674 -23.90755 -21.26537 -20.18227 -19.35478 -18.88481 -17.40602 -16.99310 -16.44711 -16.24678 -15.87512 -15.01549 -14.71821 -14.47800 -14.26116 -14.01202 -13.65884 -13.55501 -13.05967 -12.84152 -12.77306 -12.36549 -11.99533 -11.74497 -11.58859 -11.52320 -11.03264 -11.01986 -10.86128 -10.80407 -10.73493 -10.40099 -10.11240 -9.80729 -9.59151 -9.50029 -8.65911 -8.64751 -8.21052 -6.84351 -5.65578 -3.07967 1.44027 2.95207 3.24920 3.39675 3.42564 3.45502 3.47234 4.34730 4.42935 4.49626 4.63845 4.90766 4.96544 5.06314 5.15958 5.29849 5.33832 5.40272 5.45300 5.52811 5.58089 5.65998 5.75162 5.77083 5.85548 5.92099 5.95323 6.08436 6.28089 6.40073 6.58020 6.61061 6.74782 6.98047 7.13070 7.50854 7.61800 7.71873 7.84794 8.34284 8.43940 9.21167 9.81819 10.46419 11.38051 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.003626 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.857254 B = 7720.761742 C = 7794.509096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.597 5.597 3 C 0.569 3.431 4 O -0.558 6.558 5 C -0.302 4.302 6 C 0.143 3.857 7 O -0.314 6.314 8 C 0.054 3.946 9 C -0.160 4.160 10 C -0.078 4.078 11 C 0.126 3.874 12 H 0.102 0.898 13 C -0.151 4.151 14 C 0.153 3.847 15 N -0.603 5.603 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.130 3.870 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.174 0.826 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.015 0.985 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 20.137 2.082 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.328 5.328 3 C 0.360 3.640 4 O -0.439 6.439 5 C -0.306 4.306 6 C 0.076 3.924 7 O -0.226 6.226 8 C -0.020 4.020 9 C -0.197 4.197 10 C -0.115 4.115 11 C 0.022 3.978 12 H 0.120 0.880 13 C -0.191 4.191 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.003 3.997 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.190 0.810 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.876 20.096 1.997 21.033 hybrid contribution -0.403 -1.032 -0.432 1.190 sum -6.279 19.064 1.565 20.133 Atomic orbital electron populations 1.22206 0.80173 1.03808 1.01093 1.47722 1.06729 1.05896 1.72477 1.16665 0.87001 0.83768 0.76530 1.90802 1.13946 1.87721 1.51455 1.20048 1.03958 0.95444 1.11190 1.22763 0.94831 0.82519 0.92332 1.86242 1.27950 1.27854 1.80511 1.23516 0.80259 1.01993 0.96255 1.22257 1.03390 0.96190 0.97880 1.20785 0.94825 0.96274 0.99596 1.22230 0.97180 0.81502 0.96863 0.87970 1.23378 1.00595 0.98844 0.96245 1.21934 0.98514 0.91651 0.85092 1.44451 1.79558 1.00896 1.08046 1.19074 1.37839 0.84828 0.93307 0.90487 1.24790 1.01919 0.97443 0.96468 1.69789 1.54805 1.21500 1.10984 0.86062 0.78056 0.82455 0.78852 1.21607 1.21647 1.20714 1.21530 0.97831 0.86228 0.94122 0.91550 0.92364 0.89838 0.80959 0.90905 0.87578 0.89588 0.90497 0.89527 0.90018 0.92164 0.91838 0.87328 0.96740 0.93700 0.95485 0.95782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 7.14 59.85 0.43 1.31 16 2 N -0.60 -9.60 2.89 -175.18 -0.51 -10.11 16 3 C 0.57 9.27 7.13 -14.90 -0.11 9.17 16 4 O -0.56 -11.08 15.75 5.16 0.08 -11.00 16 5 C -0.30 -3.75 5.23 -105.07 -0.55 -4.30 16 6 C 0.14 1.64 10.41 29.06 0.30 1.94 16 7 O -0.31 -3.16 10.47 -14.88 -0.16 -3.32 16 8 C 0.05 0.37 7.15 37.41 0.27 0.63 16 9 C -0.16 -1.11 6.23 -26.37 -0.16 -1.27 16 10 C -0.08 -0.72 3.86 -27.91 -0.11 -0.83 16 11 C 0.13 2.43 3.31 -66.09 -0.22 2.21 16 12 H 0.10 2.15 7.00 -51.93 -0.36 1.79 16 13 C -0.15 -2.96 6.59 -24.59 -0.16 -3.12 16 14 C 0.15 3.77 5.89 -2.53 -0.01 3.75 16 15 N -0.60 -15.64 3.39 -170.08 -0.58 -16.22 16 16 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 20 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.13 2.83 6.71 -3.06 -0.02 2.81 16 25 H 0.07 0.69 5.14 -51.93 -0.27 0.42 16 26 H 0.06 0.64 7.21 -51.93 -0.37 0.26 16 27 H 0.08 1.20 6.33 -51.93 -0.33 0.87 16 28 H 0.17 1.99 7.60 -52.48 -0.40 1.59 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.70 5.40 -51.93 -0.28 0.42 16 34 H 0.08 0.80 7.37 -51.93 -0.38 0.42 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.17 6.91 -51.93 -0.36 0.82 16 37 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.03 0.57 6.56 -51.93 -0.34 0.23 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -32.75 317.40 -7.34 -40.09 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.90 Total: -0.49 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.60 Total: 5.53 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.52 Total: -52.61 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.07 Total: -14.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.75 -7.34 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032941237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.424 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds