Wall clock time and date at job start Tue Mar 31 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 120.00263 * 2 1 4 4 O 1.21737 * 119.99997 * 185.35889 * 3 2 1 5 5 C 1.41795 * 119.99661 * 5.35672 * 3 2 1 6 6 C 1.33454 * 118.78915 * 212.15772 * 5 3 2 7 7 O 1.34346 * 123.08586 * 180.11477 * 6 5 3 8 8 C 1.45360 * 117.54209 * 344.22017 * 7 6 5 9 9 C 1.53480 * 108.26346 * 47.22870 * 8 7 6 10 10 C 1.50419 * 118.79055 * 32.42800 * 5 3 2 11 11 C 1.46501 * 120.00049 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.64380 * 179.29890 * 11 2 1 13 13 C 1.55158 * 110.87203 * 302.55391 * 11 2 1 14 14 C 1.54902 * 101.58180 * 153.93643 * 13 11 2 15 15 N 1.47427 * 104.83476 * 322.98630 * 14 13 11 16 16 C 1.36938 * 125.65225 * 204.17077 * 15 14 13 17 17 H 1.07999 * 119.99682 * 179.97438 * 16 15 14 18 18 C 1.38806 * 119.99798 * 359.95429 * 16 15 14 19 19 N 1.31626 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00038 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46876 * 89.99699 * 20 18 16 22 22 H 1.48498 * 109.47359 * 209.99929 * 20 18 16 23 23 H 1.48499 * 109.47034 * 330.00326 * 20 18 16 24 24 C 1.47023 * 108.69899 * 24.12982 * 15 14 13 25 25 H 1.09003 * 109.46969 * 294.30131 * 1 2 3 26 26 H 1.09003 * 109.46800 * 54.29541 * 1 2 3 27 27 H 1.08993 * 109.47349 * 174.29475 * 1 2 3 28 28 H 1.08004 * 118.45880 * 0.39056 * 6 5 3 29 29 H 1.08994 * 109.70398 * 287.52876 * 8 7 6 30 30 H 1.09006 * 109.73293 * 166.93326 * 8 7 6 31 31 H 1.08997 * 109.70577 * 177.60621 * 9 8 7 32 32 H 1.08992 * 109.74660 * 57.00336 * 9 8 7 33 33 H 1.08998 * 109.45514 * 282.36308 * 10 5 3 34 34 H 1.09004 * 109.45175 * 42.31671 * 10 5 3 35 35 H 1.09000 * 110.99920 * 272.00630 * 13 11 2 36 36 H 1.08995 * 111.00718 * 35.85649 * 13 11 2 37 37 H 1.09000 * 110.36859 * 204.15136 * 14 13 11 38 38 H 1.08999 * 110.46334 * 81.87226 * 14 13 11 39 39 H 0.96995 * 119.99976 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.88267 * 239.52352 * 24 15 14 41 41 H 1.08996 * 109.88202 * 118.36085 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3523 1.1694 -0.0985 5 6 1.4346 2.3925 0.1146 6 6 1.9207 3.4731 -0.4994 7 8 1.3257 4.6765 -0.4466 8 6 -0.0547 4.7245 0.0063 9 6 -0.1722 3.8789 1.2818 10 6 0.1704 2.4279 0.9290 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0916 -0.0120 13 6 1.7983 -2.1370 1.2229 14 6 2.0948 -3.5647 0.7004 15 7 1.7093 -3.5336 -0.7223 16 6 1.3493 -4.6190 -1.4756 17 1 1.0824 -4.4909 -2.5142 18 6 1.3280 -5.8840 -0.9044 19 7 1.6533 -6.0401 0.3615 20 14 0.8377 -7.3648 -1.9322 21 1 2.0457 -7.9454 -2.5716 22 1 0.2011 -8.3840 -1.0597 23 1 -0.1234 -6.9421 -2.9823 24 6 1.7744 -2.1440 -1.1980 25 1 -0.3633 0.4229 0.9366 26 1 -0.3633 0.5998 -0.8345 27 1 -0.3633 -1.0225 -0.1022 28 1 2.8329 3.3746 -1.0692 29 1 -0.7089 4.3187 -0.7653 30 1 -0.3358 5.7554 0.2216 31 1 -1.1907 3.9331 1.6662 32 1 0.5246 4.2485 2.0341 33 1 -0.6453 1.9921 0.3521 34 1 0.3129 1.8556 1.8457 35 1 2.4176 -1.9013 2.0884 36 1 0.7405 -2.0186 1.4576 37 1 1.4955 -4.2982 1.2398 38 1 3.1555 -3.7947 0.8010 39 1 1.6388 -6.9241 0.7604 40 1 0.7952 -1.8296 -1.5592 41 1 2.5111 -2.0598 -1.9969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032941237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:51 Heat of formation + Delta-G solvation = -33.208743 kcal Electronic energy + Delta-G solvation = -22586.408350 eV Core-core repulsion = 19274.612580 eV Total energy + Delta-G solvation = -3311.795770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.88007 -40.40457 -38.93654 -36.49715 -35.15702 -33.83967 -32.54242 -31.07282 -29.23364 -28.19951 -26.68672 -26.25643 -25.08086 -22.44041 -22.12993 -20.55804 -19.96130 -18.97170 -18.37627 -17.72374 -17.27935 -16.77465 -16.74479 -16.06445 -15.82935 -15.59217 -15.06819 -14.94388 -14.40924 -14.36948 -14.16598 -13.83012 -13.75693 -13.71951 -13.39011 -12.98574 -12.72209 -12.71331 -12.46846 -12.25458 -12.13600 -12.01229 -11.83878 -11.63954 -11.52180 -11.36477 -10.83123 -10.76403 -9.70421 -9.38062 -8.93376 -7.78675 -5.24971 0.46254 1.47358 1.49671 1.58300 1.92248 2.20195 2.35942 2.50465 3.31491 3.61411 3.72971 3.78779 3.86213 3.92670 4.03734 4.17031 4.24283 4.28059 4.35550 4.38707 4.53805 4.61601 4.64347 4.68854 4.78281 4.81448 4.89953 4.96694 5.02860 5.07965 5.15890 5.22916 5.27211 5.43967 5.55602 5.60986 5.75642 6.23147 6.27013 6.51450 7.07750 7.17097 7.73476 8.37644 9.23070 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.003626 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.857254 B = 7720.761742 C = 7794.509096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.597 5.597 3 C 0.566 3.434 4 O -0.604 6.604 5 C -0.316 4.316 6 C 0.158 3.842 7 O -0.321 6.321 8 C 0.046 3.954 9 C -0.153 4.153 10 C -0.078 4.078 11 C 0.140 3.860 12 H 0.080 0.920 13 C -0.130 4.130 14 C 0.157 3.843 15 N -0.622 5.622 16 C -0.242 4.242 17 H 0.081 0.919 18 C -0.064 4.064 19 N -0.948 5.948 20 Si 0.983 3.017 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.132 3.868 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.164 0.836 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.083 0.917 38 H -0.016 1.016 39 H 0.249 0.751 40 H 0.042 0.958 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 22.021 1.963 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.327 5.327 3 C 0.360 3.640 4 O -0.489 6.489 5 C -0.321 4.321 6 C 0.090 3.910 7 O -0.232 6.232 8 C -0.027 4.027 9 C -0.191 4.191 10 C -0.115 4.115 11 C 0.035 3.965 12 H 0.099 0.901 13 C -0.170 4.170 14 C 0.031 3.969 15 N -0.348 5.348 16 C -0.371 4.371 17 H 0.099 0.901 18 C -0.256 4.256 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.192 1.192 24 C 0.006 3.994 25 H 0.114 0.886 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.105 0.895 30 H 0.150 0.850 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.002 0.998 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -8.288 22.024 1.872 23.607 hybrid contribution 0.351 -1.521 -0.427 1.618 sum -7.937 20.503 1.444 22.033 Atomic orbital electron populations 1.22478 0.77692 1.03536 1.03747 1.47723 1.08113 1.04501 1.72388 1.17255 0.86600 0.84770 0.75373 1.90777 1.16114 1.88322 1.53671 1.19965 1.05544 0.93568 1.13029 1.22670 0.94303 0.82822 0.91192 1.86244 1.29907 1.26773 1.80263 1.23899 0.78409 1.03838 0.96569 1.22251 1.04819 0.94318 0.97679 1.20837 0.93547 0.98155 0.98932 1.21767 0.96454 0.82800 0.95455 0.90149 1.23164 1.01909 0.95326 0.96576 1.21715 0.96068 0.94197 0.84874 1.44713 1.79433 1.02096 1.08607 1.19444 1.37892 0.85903 0.93849 0.90132 1.25651 1.02173 1.00129 0.97676 1.70028 1.55591 1.21714 1.12421 0.85009 0.77687 0.78676 0.77505 1.21667 1.21647 1.19207 1.21594 0.98132 0.84924 0.94795 0.88570 0.90071 0.91427 0.81922 0.89498 0.84952 0.86662 0.91401 0.87878 0.90564 0.90667 0.90096 0.89935 0.99786 0.94152 0.93968 0.97112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.51 7.14 127.77 0.91 2.42 16 2 N -0.60 -18.55 2.89 -826.35 -2.39 -20.93 16 3 C 0.57 18.12 7.13 85.12 0.61 18.72 16 4 O -0.60 -24.50 15.75 -4.47 -0.07 -24.57 16 5 C -0.32 -7.31 5.23 -20.16 -0.11 -7.41 16 6 C 0.16 3.42 10.41 66.74 0.69 4.12 16 7 O -0.32 -5.66 10.47 -76.15 -0.80 -6.46 16 8 C 0.05 0.44 7.15 72.14 0.52 0.96 16 9 C -0.15 -1.53 6.23 30.83 0.19 -1.34 16 10 C -0.08 -1.18 3.86 29.83 0.12 -1.07 16 11 C 0.14 5.45 3.31 46.18 0.15 5.60 16 12 H 0.08 3.50 7.00 -2.39 -0.02 3.48 16 13 C -0.13 -5.08 6.59 31.98 0.21 -4.87 16 14 C 0.16 7.96 5.89 86.85 0.51 8.47 16 15 N -0.62 -32.95 3.39 -692.00 -2.35 -35.30 16 16 C -0.24 -13.75 10.27 84.03 0.86 -12.89 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 18 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 19 N -0.95 -56.53 10.09 21.65 0.22 -56.31 16 20 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 C 0.13 5.81 6.71 86.73 0.58 6.39 16 25 H 0.10 1.64 5.14 -2.39 -0.01 1.62 16 26 H 0.08 1.49 7.21 -2.39 -0.02 1.47 16 27 H 0.07 1.78 6.33 -2.39 -0.02 1.77 16 28 H 0.16 3.74 7.60 -2.91 -0.02 3.72 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.20 5.40 -2.39 -0.01 1.19 16 34 H 0.08 1.26 7.37 -2.38 -0.02 1.24 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.08 2.88 6.91 -2.39 -0.02 2.87 16 37 H 0.08 4.65 5.87 -2.39 -0.01 4.64 16 38 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.04 1.74 6.56 -2.39 -0.02 1.73 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -73.22 317.40 3.39 -69.83 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.03 Total: 10.17 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 5.72 Total: 15.95 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -4.52 Total: -112.54 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.87 Total: -31.03 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.22 3.39 -69.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032941237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.619 kcal (2) G-P(sol) polarization free energy of solvation -73.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds