Wall clock time and date at job start Tue Mar 31 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00016 * 2 1 4 4 O 1.21283 * 119.99909 * 184.03919 * 3 2 1 5 5 C 1.50698 * 120.00286 * 4.03505 * 3 2 1 6 6 C 1.54637 * 111.03831 * 262.36837 * 5 3 2 7 7 C 1.51108 * 104.72043 * 217.33336 * 6 5 3 8 8 C 1.30527 * 111.10618 * 16.43106 * 7 6 5 9 9 C 1.51097 * 111.10250 * 0.02562 * 8 7 6 10 10 C 1.46499 * 120.00256 * 180.02562 * 2 1 3 11 11 H 1.08999 * 110.89351 * 183.87632 * 10 2 1 12 12 C 1.55130 * 110.90246 * 307.97227 * 10 2 1 13 13 N 1.47430 * 104.72535 * 155.27185 * 12 10 2 14 14 C 1.36929 * 125.64927 * 155.81484 * 13 12 10 15 15 H 1.07997 * 120.00519 * 9.59189 * 14 13 12 16 16 C 1.38815 * 120.00116 * 189.59063 * 14 13 12 17 17 N 1.31618 * 120.00136 * 209.36236 * 16 14 13 18 18 Si 1.86801 * 119.99752 * 29.35540 * 16 14 13 19 19 H 1.48495 * 109.47480 * 275.06016 * 18 16 14 20 20 H 1.48503 * 109.46742 * 155.06258 * 18 16 14 21 21 H 1.48495 * 109.47218 * 35.06941 * 18 16 14 22 22 C 1.47028 * 108.69927 * 335.55661 * 13 12 10 23 23 C 1.54323 * 107.27042 * 1.28316 * 22 13 12 24 24 H 1.09001 * 110.71967 * 263.65225 * 23 22 13 25 25 O 1.42898 * 110.71929 * 140.56031 * 23 22 13 26 26 H 1.08997 * 109.47170 * 275.27938 * 1 2 3 27 27 H 1.09002 * 109.47029 * 35.28020 * 1 2 3 28 28 H 1.09003 * 109.47225 * 155.28187 * 1 2 3 29 29 H 1.09000 * 110.90796 * 26.37622 * 5 3 2 30 30 H 1.08998 * 110.38675 * 336.14028 * 6 5 3 31 31 H 1.09000 * 110.38593 * 98.52200 * 6 5 3 32 32 H 1.08000 * 124.44384 * 196.41503 * 7 6 5 33 33 H 1.07995 * 124.44340 * 179.97438 * 8 7 6 34 34 H 1.09001 * 110.38382 * 224.74343 * 9 8 7 35 35 H 1.09001 * 110.39102 * 102.37657 * 9 8 7 36 36 H 1.08998 * 110.49871 * 36.43528 * 12 10 2 37 37 H 1.08998 * 110.34510 * 274.03518 * 12 10 2 38 38 H 0.96998 * 119.99953 * 5.12845 * 17 16 14 39 39 H 1.09000 * 109.88290 * 120.70188 * 22 13 12 40 40 H 1.09003 * 109.87903 * 241.86535 * 22 13 12 41 41 H 0.96702 * 114.00098 * 61.44995 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3494 1.1685 -0.0740 5 6 1.3882 2.4707 0.0918 6 6 1.1903 3.0972 -1.3080 7 6 1.3453 4.5842 -1.0886 8 6 1.9177 4.8330 0.0577 9 6 2.2405 3.5535 0.7937 10 6 2.1975 -1.2687 -0.0006 11 1 3.2717 -1.0973 0.0684 12 6 1.7021 -2.1944 1.1414 13 7 2.0264 -3.5584 0.6856 14 6 2.2161 -4.6464 1.4950 15 1 1.9809 -4.5843 2.5472 16 6 2.7108 -5.8294 0.9632 17 7 2.3782 -6.9831 1.5023 18 14 3.8482 -5.7838 -0.5179 19 1 3.0392 -5.7278 -1.7619 20 1 4.6926 -7.0054 -0.5312 21 1 4.7172 -4.5824 -0.4379 22 6 2.1063 -3.5582 -0.7826 23 6 1.8483 -2.1120 -1.2552 24 1 0.8032 -1.9782 -1.5345 25 8 2.7082 -1.7756 -2.3459 26 1 -0.3633 0.0946 1.0233 27 1 -0.3633 0.8389 -0.5936 28 1 -0.3634 -0.9335 -0.4297 29 1 0.4330 2.3346 0.5989 30 1 1.9521 2.7337 -1.9978 31 1 0.1939 2.8711 -1.6878 32 1 1.0247 5.3416 -1.7886 33 1 2.1330 5.8234 0.4307 34 1 1.9579 3.6375 1.8431 35 1 3.3014 3.3204 0.7029 36 1 0.6264 -2.0867 1.2805 37 1 2.2297 -1.9687 2.0681 38 1 1.7300 -7.0126 2.2233 39 1 3.0980 -3.8806 -1.0999 40 1 1.3481 -4.2239 -1.1951 41 1 2.5828 -2.3272 -3.1302 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047330939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:36 Heat of formation + Delta-G solvation = -23.840494 kcal Electronic energy + Delta-G solvation = -22820.898991 eV Core-core repulsion = 19509.509458 eV Total energy + Delta-G solvation = -3311.389533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.49784 -38.74475 -37.32800 -35.45615 -34.97027 -32.22169 -30.18568 -28.63119 -28.37870 -27.80443 -26.83238 -24.10754 -22.42708 -20.91100 -20.05402 -19.07981 -18.82834 -17.73140 -17.56453 -16.83997 -16.51034 -16.00384 -15.05644 -14.89833 -14.48436 -14.02247 -13.57296 -13.39711 -13.12270 -12.97924 -12.75667 -12.54047 -12.49313 -12.35019 -12.25586 -11.87330 -11.74692 -11.57374 -11.38615 -11.25561 -11.11814 -10.68907 -10.32099 -10.02826 -9.68014 -9.48160 -9.23592 -9.10021 -8.54559 -8.48458 -7.18186 -6.43368 -3.25930 2.03220 2.64651 2.98081 3.38439 3.54613 3.70126 4.26961 4.34718 4.44934 4.58336 4.59256 4.86135 4.94645 5.03562 5.04016 5.14781 5.21913 5.28135 5.34164 5.38453 5.44108 5.47248 5.57550 5.63894 5.68015 5.71306 5.77524 5.85051 5.98544 6.28345 6.33924 6.37506 6.39811 6.53370 6.65210 6.69841 7.46532 7.58179 7.86014 8.25184 8.27420 8.93575 9.48646 10.13729 11.05532 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.034951 B = 0.004335 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.928529 B = 6457.878535 C = 6675.724914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.525 3.475 4 O -0.533 6.533 5 C -0.115 4.115 6 C -0.084 4.084 7 C -0.169 4.169 8 C -0.160 4.160 9 C -0.090 4.090 10 C 0.131 3.869 11 H 0.117 0.883 12 C 0.131 3.869 13 N -0.601 5.601 14 C -0.336 4.336 15 H 0.081 0.919 16 C -0.009 4.009 17 N -0.908 5.908 18 Si 1.049 2.951 19 H -0.295 1.295 20 H -0.297 1.297 21 H -0.289 1.289 22 C 0.091 3.909 23 C 0.081 3.919 24 H 0.067 0.933 25 O -0.556 6.556 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.054 0.946 38 H 0.266 0.734 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.966 20.580 -5.852 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.334 5.334 3 C 0.312 3.688 4 O -0.409 6.409 5 C -0.137 4.137 6 C -0.122 4.122 7 C -0.187 4.187 8 C -0.178 4.178 9 C -0.128 4.128 10 C 0.027 3.973 11 H 0.135 0.865 12 C 0.004 3.996 13 N -0.330 5.330 14 C -0.462 4.462 15 H 0.099 0.901 16 C -0.211 4.211 17 N -0.547 5.547 18 Si 0.882 3.118 19 H -0.223 1.223 20 H -0.224 1.224 21 H -0.217 1.217 22 C -0.035 4.035 23 C 0.021 3.979 24 H 0.085 0.915 25 O -0.361 6.361 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.176 19.975 -6.361 21.593 hybrid contribution -1.257 0.499 0.549 1.460 sum -6.433 20.474 -5.812 22.234 Atomic orbital electron populations 1.21811 0.79803 1.03237 1.01967 1.47733 1.06805 1.05726 1.73152 1.20347 0.87845 0.84836 0.75741 1.90693 1.14156 1.86952 1.49101 1.22197 1.00051 0.92720 0.98706 1.21256 1.02459 0.92964 0.95473 1.23203 1.01095 0.96504 0.97927 1.23276 0.99240 0.98451 0.96815 1.21357 1.01543 0.90917 0.98958 1.22519 0.98887 0.81697 0.94209 0.86510 1.21919 0.97902 0.84722 0.95041 1.44623 1.83808 1.04616 0.99931 1.20024 1.44388 0.88619 0.93195 0.90103 1.25762 1.00866 0.90796 1.03653 1.70899 1.33189 1.24521 1.26108 0.84049 0.77660 0.74367 0.75743 1.22273 1.22433 1.21683 1.22354 0.99815 0.94382 0.86933 1.23222 0.92878 0.94654 0.87152 0.91529 1.86566 1.63126 1.61180 1.25198 0.92192 0.91295 0.90416 0.88223 0.89981 0.90598 0.85601 0.85604 0.90786 0.88639 0.94871 0.92796 0.92453 0.94198 0.93762 0.77864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 8.21 59.84 0.49 1.28 16 2 N -0.60 -8.89 2.91 -171.35 -0.50 -9.39 16 3 C 0.52 8.00 6.72 -10.99 -0.07 7.93 16 4 O -0.53 -10.36 15.19 5.55 0.08 -10.28 16 5 C -0.12 -1.27 2.57 -90.05 -0.23 -1.50 16 6 C -0.08 -0.83 6.25 -26.82 -0.17 -0.99 16 7 C -0.17 -1.49 10.78 -35.69 -0.38 -1.87 16 8 C -0.16 -1.45 10.77 -35.70 -0.38 -1.83 16 9 C -0.09 -0.97 6.33 -26.82 -0.17 -1.14 16 10 C 0.13 2.42 3.18 -65.66 -0.21 2.21 16 11 H 0.12 2.53 7.04 -51.93 -0.37 2.17 16 12 C 0.13 2.64 6.79 -2.41 -0.02 2.62 16 13 N -0.60 -14.73 3.28 -169.93 -0.56 -15.28 16 14 C -0.34 -9.55 10.40 -15.06 -0.16 -9.71 16 15 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 16 C -0.01 -0.26 5.41 -17.43 -0.09 -0.36 16 17 N -0.91 -28.07 13.70 55.49 0.76 -27.31 16 18 Si 1.05 26.80 24.76 -169.99 -4.21 22.59 16 19 H -0.29 -6.96 6.76 56.52 0.38 -6.58 16 20 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 21 H -0.29 -7.34 6.88 56.52 0.39 -6.95 16 22 C 0.09 1.99 4.78 -3.06 -0.01 1.97 16 23 C 0.08 1.44 3.87 -24.90 -0.10 1.34 16 24 H 0.07 1.02 6.47 -51.93 -0.34 0.68 16 25 O -0.56 -9.56 13.39 -35.23 -0.47 -10.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.55 6.79 -51.93 -0.35 0.20 16 28 H 0.08 0.83 6.37 -51.93 -0.33 0.50 16 29 H 0.10 0.89 6.82 -51.93 -0.35 0.53 16 30 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 31 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.25 6.96 -51.93 -0.36 0.89 16 36 H 0.03 0.61 6.96 -51.93 -0.36 0.25 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.27 8.07 8.73 -40.82 -0.36 7.71 16 39 H 0.04 0.95 3.63 -51.93 -0.19 0.76 16 40 H 0.04 0.97 8.04 -51.93 -0.42 0.55 16 41 H 0.37 4.69 9.11 45.56 0.42 5.10 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -34.85 321.47 -6.76 -41.60 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.20 Total: 3.30 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.51 Total: -0.05 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.30 Total: -51.98 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.39 Total: -20.31 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.21 Total: 22.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.85 -6.76 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047330939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.761 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds