Wall clock time and date at job start Tue Mar 31 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99904 * 2 1 4 4 H 1.09001 * 110.91936 * 26.09468 * 3 2 1 5 5 C 1.55392 * 111.18477 * 262.03911 * 3 2 1 6 6 N 1.47431 * 104.87127 * 204.98034 * 5 3 2 7 7 C 1.36934 * 125.64810 * 204.09658 * 6 5 3 8 8 H 1.08004 * 119.99872 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99970 * 0.04615 * 7 6 5 10 10 N 1.31616 * 120.00204 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99812 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47425 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47247 * 120.00114 * 11 9 7 14 14 H 1.48501 * 109.46963 * 239.99435 * 11 9 7 15 15 C 1.47019 * 108.70142 * 24.13359 * 6 5 3 16 16 C 1.54321 * 107.27531 * 358.94050 * 15 6 5 17 17 H 1.09002 * 110.72109 * 96.17040 * 16 15 6 18 18 N 1.46505 * 110.72218 * 219.26939 * 16 15 6 19 19 C 1.34779 * 119.99500 * 271.15678 * 18 16 15 20 20 O 1.21279 * 120.00309 * 359.97438 * 19 18 16 21 21 C 1.50704 * 119.99643 * 180.02562 * 19 18 16 22 22 H 1.08994 * 115.54860 * 325.71594 * 21 19 18 23 23 C 1.52996 * 117.49657 * 111.39071 * 21 19 18 24 24 C 1.52989 * 59.99958 * 107.48814 * 23 21 19 25 25 C 1.52992 * 138.59155 * 130.89092 * 24 23 21 26 26 C 1.52995 * 138.58874 * 229.10926 * 24 23 21 27 27 H 1.09001 * 109.47113 * 60.00000 * 1 2 3 28 28 H 1.08991 * 109.46921 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46986 * 300.00260 * 1 2 3 30 30 H 1.08999 * 110.34334 * 86.13731 * 5 3 2 31 31 H 1.08998 * 110.44545 * 323.87881 * 5 3 2 32 32 H 0.96999 * 120.00486 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.88251 * 239.51790 * 15 6 5 34 34 H 1.09004 * 109.88394 * 118.35703 * 15 6 5 35 35 H 0.96996 * 120.00388 * 91.15027 * 18 16 15 36 36 H 1.09006 * 117.49995 * 214.97521 * 23 21 19 37 37 H 1.09000 * 117.50127 * 359.97438 * 23 21 19 38 38 H 1.09000 * 117.50321 * 238.37751 * 25 24 23 39 39 H 1.08994 * 117.50163 * 23.40383 * 25 24 23 40 40 H 1.09009 * 117.49915 * 336.59194 * 26 24 23 41 41 H 1.09005 * 117.50089 * 121.58976 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3332 2.0330 0.4478 5 6 2.4220 1.7369 -1.4349 6 7 3.4974 2.7261 -1.2387 7 6 3.8527 3.7055 -2.1273 8 1 4.6587 4.3840 -1.8894 9 6 3.1767 3.8267 -3.3336 10 7 2.1945 2.9999 -3.6236 11 14 3.6618 5.1624 -4.5461 12 1 4.7872 5.9536 -3.9869 13 1 4.0824 4.5394 -5.8268 14 1 2.5010 6.0564 -4.7883 15 6 4.1258 2.4861 0.0685 16 6 3.3825 1.3033 0.7242 17 1 3.9120 0.3677 0.5444 18 7 3.2105 1.5316 2.1611 19 6 4.1630 1.1300 3.0259 20 8 5.1623 0.5793 2.6147 21 6 3.9859 1.3642 4.5040 22 1 3.4632 2.2814 4.7753 23 6 3.7684 0.1378 5.3925 24 6 5.1025 0.8855 5.4339 25 6 6.0580 1.4708 6.4756 26 6 6.5977 0.5693 5.3634 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5769 2.1928 -1.9507 31 1 2.7924 0.8805 -1.9984 32 1 1.7224 3.0843 -4.4667 33 1 4.0329 3.3745 0.6932 34 1 5.1777 2.2338 -0.0664 35 1 2.4112 1.9718 2.4900 36 1 3.1028 0.2482 6.2487 37 1 3.7530 -0.8384 4.9079 38 1 6.2804 2.5360 6.4124 39 1 6.0182 1.0577 7.4834 40 1 6.9130 -0.4370 5.6396 41 1 7.1751 1.0411 4.5682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082171192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:41 Heat of formation + Delta-G solvation = 14.190747 kcal Electronic energy + Delta-G solvation = -22196.376006 eV Core-core repulsion = 18886.635632 eV Total energy + Delta-G solvation = -3309.740374 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -39.97150 -38.46539 -37.25400 -35.87084 -33.98245 -32.74035 -31.67183 -28.83765 -27.23675 -26.08521 -24.76645 -23.45758 -22.49389 -20.79537 -20.55912 -19.86848 -19.11853 -17.34018 -16.80654 -16.36760 -15.60913 -15.20093 -15.12343 -14.86291 -14.45838 -14.32849 -14.12330 -13.97007 -13.23200 -12.89207 -12.53754 -12.22226 -11.94126 -11.78507 -11.58223 -11.42409 -11.28077 -11.02944 -10.84938 -10.75836 -10.32926 -10.21989 -10.17725 -10.11008 -9.90136 -9.82990 -9.59755 -9.04542 -8.71421 -8.62972 -6.90403 -5.70275 -3.13292 2.63850 3.15539 3.38020 3.43805 3.46374 3.63425 3.76485 4.12147 4.18303 4.48865 4.66302 4.72260 5.02335 5.22158 5.33167 5.41962 5.44435 5.48187 5.49178 5.52152 5.54446 5.61221 5.68752 5.69947 5.80704 5.84154 5.85400 5.93874 6.08356 6.08875 6.22283 6.50793 6.68985 6.91522 7.25754 7.55548 7.71175 7.74392 7.80808 8.26089 8.47322 9.15476 9.75768 10.38455 11.33576 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020843 B = 0.004238 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.059471 B = 6605.698185 C = 7672.017000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.142 3.858 6 N -0.601 5.601 7 C -0.222 4.222 8 H 0.081 0.919 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.136 3.864 17 H 0.101 0.899 18 N -0.713 5.713 19 C 0.539 3.461 20 O -0.533 6.533 21 C -0.140 4.140 22 H 0.122 0.878 23 C -0.101 4.101 24 C -0.201 4.201 25 C -0.131 4.131 26 C -0.113 4.113 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.112 0.888 31 H 0.027 0.973 32 H 0.253 0.747 33 H 0.029 0.971 34 H 0.033 0.967 35 H 0.397 0.603 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 -4.047 18.033 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.085 0.915 5 C 0.016 3.984 6 N -0.329 5.329 7 C -0.350 4.350 8 H 0.099 0.901 9 C -0.206 4.206 10 N -0.571 5.571 11 Si 0.747 3.253 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.031 3.969 17 H 0.119 0.881 18 N -0.363 5.363 19 C 0.325 3.675 20 O -0.410 6.410 21 C -0.161 4.161 22 H 0.140 0.860 23 C -0.138 4.138 24 C -0.201 4.201 25 C -0.168 4.168 26 C -0.150 4.150 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.130 0.870 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.231 0.769 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.776 -4.540 17.510 18.106 hybrid contribution -0.465 1.163 -0.553 1.369 sum -1.241 -3.376 16.958 17.335 Atomic orbital electron populations 1.22707 0.81649 1.01928 0.99893 1.87852 1.19170 1.27743 1.95059 1.24120 0.92609 0.83706 1.00084 0.91498 1.22371 0.94570 0.92019 0.89392 1.44317 1.37425 1.35419 1.15706 1.19151 1.13875 1.06027 0.95960 0.90146 1.24804 0.98545 0.99383 0.97857 1.69762 1.24778 1.38681 1.23913 0.85958 0.77574 0.80747 0.80983 1.20462 1.21643 1.21716 1.21603 0.95861 0.94053 0.88111 1.22165 0.96728 1.00115 0.77899 0.88116 1.45950 1.22278 1.61097 1.06981 1.19622 0.83013 0.78176 0.86668 1.90697 1.28815 1.42179 1.79277 1.21986 1.03283 1.00751 0.90074 0.85967 1.22646 0.96003 0.95240 0.99939 1.21126 0.89422 1.06478 1.03121 1.22756 1.00308 0.99562 0.94185 1.22594 0.92138 1.00347 0.99900 0.93543 0.90314 0.94825 0.87018 0.95540 0.93651 0.95290 0.94911 0.76920 0.87745 0.88055 0.88574 0.88482 0.88616 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.85 101.05 1.10 1.59 16 2 O -0.38 -7.01 10.53 -35.23 -0.37 -7.38 16 3 C 0.05 1.05 3.19 -24.32 -0.08 0.97 16 4 H 0.07 1.19 7.70 -51.93 -0.40 0.80 16 5 C 0.14 3.49 5.65 -2.26 -0.01 3.48 16 6 N -0.60 -15.61 3.40 -169.76 -0.58 -16.18 16 7 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 10 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 11 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.13 2.90 6.99 -3.07 -0.02 2.88 16 16 C 0.14 2.61 3.00 -66.09 -0.20 2.42 16 17 H 0.10 2.16 7.62 -51.93 -0.40 1.76 16 18 N -0.71 -10.99 5.12 -52.03 -0.27 -11.26 16 19 C 0.54 8.53 7.61 -10.98 -0.08 8.45 16 20 O -0.53 -10.51 15.93 5.56 0.09 -10.42 16 21 C -0.14 -1.65 6.19 -91.78 -0.57 -2.21 16 22 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 23 C -0.10 -1.02 10.23 -26.74 -0.27 -1.29 16 24 C -0.20 -2.29 5.05 -154.52 -0.78 -3.07 16 25 C -0.13 -1.20 10.53 -26.74 -0.28 -1.48 16 26 C -0.11 -1.27 10.16 -26.73 -0.27 -1.55 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.41 8.12 -51.92 -0.42 -0.01 16 30 H 0.11 3.00 5.87 -51.93 -0.31 2.70 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 4.95 8.54 -40.82 -0.35 4.60 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 41 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -32.58 342.73 -8.63 -41.21 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.48 Total: 4.54 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.72 Total: 3.42 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.28 Total: -53.50 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.28 Total: -17.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.58 -8.63 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082171192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.399 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds