Wall clock time and date at job start Tue Mar 31 2020 02:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00118 * 2 1 4 4 C 1.52998 * 109.47392 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47074 * 64.99641 * 4 3 2 6 6 C 1.36020 * 119.61633 * 89.99924 * 5 4 3 7 7 C 1.35215 * 120.82074 * 179.69932 * 6 5 4 8 8 C 1.40264 * 120.04360 * 0.28079 * 7 6 5 9 9 C 1.36773 * 119.23558 * 359.97438 * 8 7 6 10 10 N 1.40050 * 120.39834 * 179.97438 * 9 8 7 11 11 C 1.46498 * 119.99605 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.46984 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47210 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47256 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99531 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99960 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00402 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47386 * 89.99708 * 18 16 14 20 20 H 1.48499 * 109.47164 * 209.99512 * 18 16 14 21 21 H 1.48504 * 109.47448 * 329.99572 * 18 16 14 22 22 C 1.34675 * 119.62098 * 270.26219 * 5 4 3 23 23 O 1.22076 * 120.03319 * 359.97438 * 22 5 4 24 24 H 1.09001 * 109.46899 * 60.00138 * 1 2 3 25 25 H 1.08995 * 109.47077 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46866 * 300.00449 * 1 2 3 27 27 H 1.09000 * 109.47224 * 59.99180 * 3 2 1 28 28 H 1.09004 * 109.46949 * 299.99956 * 3 2 1 29 29 H 1.09001 * 109.46543 * 304.99949 * 4 3 2 30 30 H 1.08999 * 109.47187 * 184.99918 * 4 3 2 31 31 H 1.08002 * 119.59228 * 359.97438 * 6 5 4 32 32 H 1.08008 * 119.98144 * 180.25930 * 7 6 5 33 33 H 1.07996 * 120.38312 * 180.02562 * 8 7 6 34 34 H 0.96991 * 120.00221 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47589 * 299.99808 * 11 10 9 36 36 H 1.09006 * 109.47375 * 60.00356 * 11 10 9 37 37 H 1.09000 * 109.47238 * 300.00148 * 12 11 10 38 38 H 1.08993 * 109.46970 * 60.00147 * 12 11 10 39 39 H 1.09000 * 109.46892 * 300.00055 * 13 12 11 40 40 H 1.08998 * 109.47661 * 59.99780 * 13 12 11 41 41 H 0.96991 * 120.00092 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2639 1.3473 -2.3250 7 6 4.6789 0.8006 -3.4900 8 6 4.8126 -0.5910 -3.6044 9 6 4.5193 -1.3810 -2.5271 10 7 4.6437 -2.7732 -2.6145 11 6 5.0897 -3.3916 -3.8655 12 6 5.1388 -4.9112 -3.6941 13 6 5.6051 -5.5570 -5.0003 14 6 5.6529 -7.0538 -4.8317 15 1 5.3784 -7.4998 -3.8871 16 6 6.0479 -7.8537 -5.8829 17 7 6.3826 -7.3106 -7.0330 18 14 6.1077 -9.7090 -5.6736 19 1 4.7943 -10.2920 -6.0480 20 1 7.1668 -10.2720 -6.5491 21 1 6.4096 -10.0379 -4.2573 22 6 4.0881 -0.7761 -1.3260 23 8 3.8227 -1.4668 -0.3551 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8507 0.5685 0.8427 30 1 3.9785 2.1765 0.0902 31 1 4.1636 2.4197 -2.2451 32 1 4.9073 1.4358 -4.3332 33 1 5.1440 -1.0334 -4.5321 34 1 4.4346 -3.3280 -1.8469 35 1 4.3927 -3.1388 -4.6645 36 1 6.0832 -3.0220 -4.1195 37 1 5.8355 -5.1644 -2.8950 38 1 4.1452 -5.2804 -3.4403 39 1 4.9087 -5.3038 -5.7997 40 1 6.5988 -5.1877 -5.2538 41 1 6.6601 -7.8734 -7.7725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:14 Heat of formation + Delta-G solvation = -53.559390 kcal Electronic energy + Delta-G solvation = -21429.678876 eV Core-core repulsion = 18117.000636 eV Total energy + Delta-G solvation = -3312.678241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21542 -38.13351 -36.79204 -36.64228 -34.29949 -32.98824 -31.26293 -29.87515 -28.63447 -26.61555 -26.34921 -24.42771 -23.14308 -22.53743 -21.42698 -20.29847 -17.79179 -17.48565 -16.64647 -16.35063 -16.29831 -16.09153 -15.76332 -15.06517 -14.76137 -14.54223 -14.42560 -14.31761 -13.91622 -13.01473 -12.81027 -12.43657 -12.29353 -12.15914 -12.09899 -11.94880 -11.63898 -11.57847 -11.36404 -10.93502 -10.63900 -10.54679 -10.40976 -9.97861 -9.77400 -9.73098 -9.42574 -9.10165 -8.79603 -8.35097 -6.75190 -6.00284 -4.02581 1.22371 2.10187 2.61028 3.33127 3.39175 3.43052 3.47100 3.85078 3.90043 4.47081 4.60371 4.65372 4.72009 4.83503 4.96111 4.96717 5.10232 5.12205 5.34570 5.35828 5.42293 5.48818 5.52539 5.72141 5.79044 5.94554 6.15623 6.24092 6.44337 6.64741 6.66617 6.76999 6.90722 7.02858 7.16259 7.53649 7.65328 7.78261 7.98871 8.03681 8.20599 8.41504 9.03980 9.61589 11.11158 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.002944 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.894498 B = 9509.237533 C =10119.056642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.100 3.900 5 N -0.487 5.487 6 C 0.033 3.967 7 C -0.154 4.154 8 C -0.177 4.177 9 C 0.119 3.881 10 N -0.720 5.720 11 C 0.124 3.876 12 C -0.121 4.121 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.515 3.485 23 O -0.537 6.537 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.405 0.595 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 23.429 11.562 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.034 4.034 4 C -0.022 4.022 5 N -0.203 5.203 6 C -0.091 4.091 7 C -0.177 4.177 8 C -0.208 4.208 9 C 0.009 3.991 10 N -0.347 5.347 11 C 0.001 3.999 12 C -0.159 4.159 13 C -0.012 4.012 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.312 3.688 23 O -0.418 6.418 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.240 0.760 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.730 22.677 11.870 26.738 hybrid contribution -0.268 -0.852 0.078 0.897 sum -7.998 21.825 11.947 26.135 Atomic orbital electron populations 1.22743 0.81298 1.02997 0.99475 1.88150 1.19268 1.26119 1.95229 1.22921 0.93487 0.86255 1.00724 1.21885 0.93328 0.99606 0.87380 1.44833 1.56384 1.07009 1.12073 1.21356 1.03936 0.96262 0.87516 1.20254 1.05593 0.94781 0.97094 1.20587 1.08376 0.93051 0.98784 1.18608 1.00377 0.86386 0.93692 1.44839 1.72239 1.01746 1.15883 1.21635 0.98586 0.94873 0.84788 1.21862 1.01188 0.90848 1.02022 1.19023 0.96576 0.95038 0.90579 1.21231 1.44886 0.91759 0.98064 0.92629 1.25017 0.95340 0.98797 0.95290 1.69956 1.45618 1.35312 1.02597 0.86580 0.77708 0.85578 0.78060 1.20655 1.21210 1.19858 1.16649 0.81488 0.81432 0.89204 1.90957 1.52096 1.60642 1.38147 0.94323 0.89518 0.94267 0.91976 0.92930 0.87743 0.87863 0.83381 0.84610 0.85284 0.75970 0.92431 0.92397 0.92690 0.92691 0.96339 0.96314 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.37 -4.61 9.42 -44.41 -0.42 -5.02 16 3 C 0.04 0.37 6.28 37.16 0.23 0.60 16 4 C 0.10 0.86 5.80 -4.05 -0.02 0.84 16 5 N -0.49 -5.68 2.58 -119.51 -0.31 -5.98 16 6 C 0.03 0.30 10.28 -16.77 -0.17 0.13 16 7 C -0.15 -1.60 10.00 -39.90 -0.40 -2.00 16 8 C -0.18 -2.44 9.36 -39.35 -0.37 -2.81 16 9 C 0.12 1.90 6.68 -83.50 -0.56 1.34 16 10 N -0.72 -12.34 5.73 -58.45 -0.34 -12.67 16 11 C 0.12 2.21 4.93 -4.04 -0.02 2.19 16 12 C -0.12 -2.52 5.27 -26.73 -0.14 -2.67 16 13 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 14 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.51 8.16 7.04 -15.17 -0.11 8.06 16 23 O -0.54 -10.05 15.14 -4.33 -0.07 -10.11 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 1.08 7.40 -51.93 -0.38 0.70 16 30 H 0.10 0.46 8.01 -51.93 -0.42 0.05 16 31 H 0.15 0.76 8.04 -52.49 -0.42 0.34 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.13 1.75 6.77 -52.49 -0.36 1.40 16 34 H 0.40 7.13 7.93 -40.82 -0.32 6.81 16 35 H 0.06 1.01 7.97 -51.93 -0.41 0.60 16 36 H 0.06 1.01 7.96 -51.93 -0.41 0.60 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -34.52 344.68 -7.71 -42.23 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.50 Total: 1.82 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.99 Total: -6.06 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.09 Total: -44.91 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.48 Total: -15.13 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.52 -7.71 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.333 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds