Wall clock time and date at job start Tue Mar 31 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33316 * 126.10856 * 2 1 4 4 C 1.30862 * 109.68944 * 180.02562 * 3 2 1 5 5 N 1.34502 * 109.15817 * 359.72879 * 4 3 2 6 6 C 1.46500 * 126.47049 * 180.29197 * 5 4 3 7 7 C 1.36663 * 126.10709 * 180.02562 * 2 1 3 8 8 C 1.46768 * 126.84392 * 359.97438 * 7 2 1 9 9 O 1.21674 * 120.00175 * 85.83665 * 8 7 2 10 10 N 1.34775 * 119.99733 * 265.83403 * 8 7 2 11 11 C 1.46505 * 119.99747 * 174.94534 * 10 8 7 12 12 H 1.08994 * 109.47056 * 324.99899 * 11 10 8 13 13 C 1.53000 * 109.46927 * 85.00190 * 11 10 8 14 14 C 1.53003 * 109.46714 * 205.00143 * 11 10 8 15 15 N 1.46501 * 109.47362 * 55.00274 * 14 11 10 16 16 C 1.46499 * 119.99611 * 269.99364 * 15 14 11 17 17 C 1.36933 * 120.00135 * 89.99935 * 15 14 11 18 18 H 1.08004 * 119.99898 * 22.65572 * 17 15 14 19 19 C 1.38814 * 120.00144 * 202.66436 * 17 15 14 20 20 N 1.31617 * 119.99461 * 11.20328 * 19 17 15 21 21 Si 1.86794 * 120.00023 * 191.20715 * 19 17 15 22 22 H 1.48498 * 109.47292 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47022 * 119.99793 * 21 19 17 24 24 H 1.48497 * 109.47074 * 239.99269 * 21 19 17 25 25 H 1.09004 * 109.47022 * 269.97566 * 1 2 3 26 26 H 1.08999 * 109.46923 * 29.97450 * 1 2 3 27 27 H 1.08996 * 109.47400 * 149.97479 * 1 2 3 28 28 H 1.07997 * 125.42325 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47258 * 274.99110 * 6 5 4 30 30 H 1.08998 * 109.47046 * 34.99692 * 6 5 4 31 31 H 1.09007 * 109.46963 * 154.99156 * 6 5 4 32 32 H 0.96997 * 120.00347 * 354.94904 * 10 8 7 33 33 H 1.09002 * 109.47320 * 60.00221 * 13 11 10 34 34 H 1.09007 * 109.46658 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.47167 * 299.99901 * 13 11 10 36 36 H 1.09004 * 109.46582 * 175.00009 * 14 11 10 37 37 H 1.09000 * 109.46991 * 294.99587 * 14 11 10 38 38 H 1.09003 * 109.46555 * 95.10122 * 16 15 14 39 39 H 1.09001 * 109.46935 * 215.09224 * 16 15 14 40 40 H 1.08998 * 109.47342 * 335.09974 * 16 15 14 41 41 H 0.97005 * 119.99888 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5479 0.7072 -0.0006 5 7 3.6122 -0.6363 0.0051 6 6 4.8305 -1.4498 0.0125 7 6 2.3123 -1.1041 -0.0005 8 6 1.8820 -2.5073 -0.0006 9 8 1.6301 -3.0664 -1.0515 10 7 1.7660 -3.1766 1.1635 11 6 1.2313 -4.5405 1.1740 12 1 0.4602 -4.6344 0.4094 13 6 2.3595 -5.5328 0.8851 14 6 0.6271 -4.8408 2.5472 15 7 -0.3708 -3.8196 2.8756 16 6 0.0314 -2.6056 3.5902 17 6 -1.6794 -4.0000 2.5147 18 1 -2.0569 -4.9953 2.3321 19 6 -2.5206 -2.9036 2.3834 20 7 -2.0203 -1.6862 2.3870 21 14 -4.3625 -3.1561 2.2018 22 1 -4.6679 -4.6091 2.2274 23 1 -5.0673 -2.4819 3.3217 24 1 -4.8165 -2.5779 0.9116 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 4.3971 1.3744 -0.0011 29 1 5.1858 -1.5813 -1.0095 30 1 5.5982 -0.9490 0.6025 31 1 4.6140 -2.4244 0.4502 32 1 2.0364 -2.7553 1.9942 33 1 3.1306 -5.4390 1.6498 34 1 1.9617 -6.5477 0.8934 35 1 2.7899 -5.3189 -0.0931 36 1 0.1509 -5.8212 2.5281 37 1 1.4151 -4.8342 3.3002 38 1 0.2271 -1.8094 2.8719 39 1 -0.7687 -2.2987 4.2638 40 1 0.9349 -2.8055 4.1662 41 1 -2.6082 -0.9200 2.2956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268734708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:18 Heat of formation + Delta-G solvation = 48.128306 kcal Electronic energy + Delta-G solvation = -23346.912442 eV Core-core repulsion = 20070.936462 eV Total energy + Delta-G solvation = -3275.975980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90964 -38.96383 -36.31595 -34.27353 -34.00685 -31.61902 -30.73209 -29.98450 -28.00931 -26.19122 -25.87355 -25.53080 -23.10761 -21.49250 -20.42381 -20.07252 -19.41605 -17.38018 -16.81463 -16.08057 -15.60870 -15.29412 -14.90935 -14.68465 -13.97471 -13.68096 -13.42604 -13.28413 -13.16625 -12.91478 -12.83561 -12.29318 -12.19074 -11.96783 -11.76633 -11.51109 -11.45857 -11.11292 -10.85518 -10.77996 -10.55558 -10.21707 -10.05692 -9.93272 -9.84277 -9.44549 -9.35202 -8.62884 -8.41811 -8.03420 -6.74432 -5.70040 -3.16114 1.99893 2.54418 3.17401 3.31944 3.40583 3.48590 3.49592 3.84629 4.52460 4.62269 4.73744 4.98588 5.00724 5.24505 5.31308 5.47454 5.49399 5.64389 5.70284 5.79647 5.94884 6.05799 6.18340 6.30884 6.42176 6.43843 6.48944 6.56289 6.63748 6.72917 6.82177 7.08048 7.10497 7.31659 7.34348 7.69825 7.83511 8.01524 8.25013 8.40131 8.67981 9.24936 9.86526 10.34591 11.34261 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.006823 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.725602 B = 4102.543966 C = 5080.515259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.076 3.924 3 N -0.495 5.495 4 C 0.188 3.812 5 N -0.446 5.446 6 C 0.073 3.927 7 C -0.078 4.078 8 C 0.602 3.398 9 O -0.539 6.539 10 N -0.684 5.684 11 C 0.116 3.884 12 H 0.087 0.913 13 C -0.159 4.159 14 C 0.143 3.857 15 N -0.596 5.596 16 C 0.162 3.838 17 C -0.258 4.258 18 H 0.067 0.933 19 C 0.008 3.992 20 N -0.898 5.898 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.206 0.794 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.396 0.604 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.034 0.966 39 H 0.044 0.956 40 H -0.009 1.009 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.381 -0.162 -1.042 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.056 4.056 3 N -0.214 5.214 4 C -0.093 4.093 5 N -0.131 5.131 6 C -0.070 4.070 7 C -0.193 4.193 8 C 0.385 3.615 9 O -0.416 6.416 10 N -0.333 5.333 11 C 0.008 3.992 12 H 0.105 0.895 13 C -0.218 4.218 14 C 0.015 3.985 15 N -0.318 5.318 16 C 0.017 3.983 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.190 4.190 20 N -0.542 5.542 21 Si 0.732 3.268 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.223 0.777 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.231 0.769 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.009 0.991 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.929 0.275 -1.760 14.042 hybrid contribution -0.425 -0.515 0.168 0.688 sum 13.504 -0.240 -1.592 13.599 Atomic orbital electron populations 1.20196 0.85851 1.02020 1.04896 1.21057 0.96866 0.86372 1.01355 1.70016 1.00249 1.30478 1.20653 1.24874 0.97256 0.81624 1.05595 1.45233 1.05780 1.07633 1.54434 1.22057 0.84931 0.96303 1.03701 1.20884 0.84249 0.95586 1.18584 1.16749 0.77623 0.82822 0.84320 1.90783 1.51002 1.68099 1.31674 1.45842 1.63088 1.15985 1.08371 1.21975 0.94806 0.79508 1.02877 0.89506 1.22153 0.99048 0.99545 1.01078 1.21191 0.91733 0.94077 0.91528 1.43884 1.04239 1.19370 1.64338 1.20865 0.94655 0.88396 0.94341 1.19179 0.85097 0.92346 1.42082 0.91512 1.24965 0.98168 0.95572 1.00335 1.70023 1.33050 0.97018 1.54154 0.86243 0.85938 0.77396 0.77251 1.20559 1.21794 1.21760 0.88298 0.91971 0.91184 0.77724 0.90380 0.89217 0.89757 0.76930 0.93279 0.91893 0.92978 0.92187 0.94121 0.94749 0.93741 0.99086 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 10.24 36.01 0.37 -1.10 16 2 C 0.08 1.48 7.15 -82.52 -0.59 0.89 16 3 N -0.49 -8.85 11.20 -10.64 -0.12 -8.97 16 4 C 0.19 2.58 12.52 -90.56 -1.13 1.44 16 5 N -0.45 -6.25 3.17 -121.97 -0.39 -6.64 16 6 C 0.07 0.67 11.07 59.85 0.66 1.33 16 7 C -0.08 -1.43 6.66 -82.14 -0.55 -1.98 16 8 C 0.60 11.91 6.69 -12.81 -0.09 11.82 16 9 O -0.54 -12.37 16.78 5.21 0.09 -12.28 16 10 N -0.68 -12.41 4.41 -55.09 -0.24 -12.65 16 11 C 0.12 2.10 2.84 -67.93 -0.19 1.90 16 12 H 0.09 1.91 7.65 -51.93 -0.40 1.51 16 13 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 14 C 0.14 2.68 5.33 -4.04 -0.02 2.66 16 15 N -0.60 -13.83 2.78 -181.11 -0.50 -14.33 16 16 C 0.16 3.68 7.59 59.85 0.45 4.14 16 17 C -0.26 -6.75 9.67 -15.06 -0.15 -6.89 16 18 H 0.07 1.75 7.84 -52.48 -0.41 1.34 16 19 C 0.01 0.23 5.14 -17.43 -0.09 0.14 16 20 N -0.90 -24.33 10.49 55.49 0.58 -23.74 16 21 Si 0.90 21.62 29.57 -169.99 -5.03 16.59 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H 0.10 2.20 8.04 -51.93 -0.42 1.78 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 1.57 7.94 -51.93 -0.41 1.15 16 28 H 0.21 1.77 8.06 -52.49 -0.42 1.34 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.81 7.80 -51.92 -0.40 0.40 16 32 H 0.40 6.87 7.17 -40.82 -0.29 6.57 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 37 H 0.04 0.67 7.86 -51.93 -0.41 0.27 16 38 H 0.03 0.84 6.93 -51.93 -0.36 0.48 16 39 H 0.04 1.12 7.27 -51.93 -0.38 0.74 16 40 H -0.01 -0.18 7.83 -51.93 -0.41 -0.59 16 41 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -32.17 343.65 -7.80 -39.97 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.40 Total: 4.46 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: -0.97 Total: 12.42 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.67 Total: -66.34 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.17 -7.80 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268734708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.099 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds