Wall clock time and date at job start Tue Mar 31 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33316 * 126.10856 * 2 1 4 4 C 1.30862 * 109.68944 * 180.02562 * 3 2 1 5 5 N 1.34502 * 109.15817 * 359.72879 * 4 3 2 6 6 C 1.46500 * 126.47049 * 180.29197 * 5 4 3 7 7 C 1.36663 * 126.10709 * 180.02562 * 2 1 3 8 8 C 1.46768 * 126.84392 * 359.97438 * 7 2 1 9 9 O 1.21674 * 120.00175 * 85.83665 * 8 7 2 10 10 N 1.34775 * 119.99733 * 265.83403 * 8 7 2 11 11 C 1.46505 * 119.99747 * 174.94534 * 10 8 7 12 12 H 1.08994 * 109.47056 * 324.99899 * 11 10 8 13 13 C 1.53000 * 109.46927 * 85.00190 * 11 10 8 14 14 C 1.53003 * 109.46714 * 205.00143 * 11 10 8 15 15 N 1.46501 * 109.47362 * 55.00274 * 14 11 10 16 16 C 1.46499 * 119.99611 * 269.99364 * 15 14 11 17 17 C 1.36933 * 120.00135 * 89.99935 * 15 14 11 18 18 H 1.08004 * 119.99898 * 22.65572 * 17 15 14 19 19 C 1.38814 * 120.00144 * 202.66436 * 17 15 14 20 20 N 1.31617 * 119.99461 * 11.20328 * 19 17 15 21 21 Si 1.86794 * 120.00023 * 191.20715 * 19 17 15 22 22 H 1.48498 * 109.47292 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47022 * 119.99793 * 21 19 17 24 24 H 1.48497 * 109.47074 * 239.99269 * 21 19 17 25 25 H 1.09004 * 109.47022 * 269.97566 * 1 2 3 26 26 H 1.08999 * 109.46923 * 29.97450 * 1 2 3 27 27 H 1.08996 * 109.47400 * 149.97479 * 1 2 3 28 28 H 1.07997 * 125.42325 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47258 * 274.99110 * 6 5 4 30 30 H 1.08998 * 109.47046 * 34.99692 * 6 5 4 31 31 H 1.09007 * 109.46963 * 154.99156 * 6 5 4 32 32 H 0.96997 * 120.00347 * 354.94904 * 10 8 7 33 33 H 1.09002 * 109.47320 * 60.00221 * 13 11 10 34 34 H 1.09007 * 109.46658 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.47167 * 299.99901 * 13 11 10 36 36 H 1.09004 * 109.46582 * 175.00009 * 14 11 10 37 37 H 1.09000 * 109.46991 * 294.99587 * 14 11 10 38 38 H 1.09003 * 109.46555 * 95.10122 * 16 15 14 39 39 H 1.09001 * 109.46935 * 215.09224 * 16 15 14 40 40 H 1.08998 * 109.47342 * 335.09974 * 16 15 14 41 41 H 0.97005 * 119.99888 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5479 0.7072 -0.0006 5 7 3.6122 -0.6363 0.0051 6 6 4.8305 -1.4498 0.0125 7 6 2.3123 -1.1041 -0.0005 8 6 1.8820 -2.5073 -0.0006 9 8 1.6301 -3.0664 -1.0515 10 7 1.7660 -3.1766 1.1635 11 6 1.2313 -4.5405 1.1740 12 1 0.4602 -4.6344 0.4094 13 6 2.3595 -5.5328 0.8851 14 6 0.6271 -4.8408 2.5472 15 7 -0.3708 -3.8196 2.8756 16 6 0.0314 -2.6056 3.5902 17 6 -1.6794 -4.0000 2.5147 18 1 -2.0569 -4.9953 2.3321 19 6 -2.5206 -2.9036 2.3834 20 7 -2.0203 -1.6862 2.3870 21 14 -4.3625 -3.1561 2.2018 22 1 -4.6679 -4.6091 2.2274 23 1 -5.0673 -2.4819 3.3217 24 1 -4.8165 -2.5779 0.9116 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 4.3971 1.3744 -0.0011 29 1 5.1858 -1.5813 -1.0095 30 1 5.5982 -0.9490 0.6025 31 1 4.6140 -2.4244 0.4502 32 1 2.0364 -2.7553 1.9942 33 1 3.1306 -5.4390 1.6498 34 1 1.9617 -6.5477 0.8934 35 1 2.7899 -5.3189 -0.0931 36 1 0.1509 -5.8212 2.5281 37 1 1.4151 -4.8342 3.3002 38 1 0.2271 -1.8094 2.8719 39 1 -0.7687 -2.2987 4.2638 40 1 0.9349 -2.8055 4.1662 41 1 -2.6082 -0.9200 2.2956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268734708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:16 Heat of formation + Delta-G solvation = 27.459067 kcal Electronic energy + Delta-G solvation = -23347.808727 eV Core-core repulsion = 20070.936462 eV Total energy + Delta-G solvation = -3276.872265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.15080 -40.50644 -38.01121 -35.76316 -35.38434 -33.26513 -32.42123 -31.45740 -29.19070 -27.93665 -27.37910 -26.96138 -24.53263 -23.17887 -21.78778 -21.50685 -20.84633 -18.73579 -18.67360 -17.48645 -16.98513 -16.62505 -16.52952 -16.14200 -15.53258 -15.34052 -15.00073 -14.80865 -14.52954 -14.32440 -13.89993 -13.74674 -13.51967 -13.38908 -13.18084 -13.10691 -13.04216 -12.84163 -12.68344 -12.52154 -12.29123 -11.98679 -11.79591 -11.70510 -11.46159 -10.87824 -10.58670 -10.54870 -10.02964 -9.38837 -8.66463 -7.73103 -5.19357 0.74141 1.26074 1.45630 1.49324 1.56192 1.79996 2.03256 2.48691 2.56131 3.39336 3.58350 3.71688 3.78600 3.87251 4.15232 4.23375 4.33714 4.38167 4.40278 4.51607 4.63149 4.76698 4.80216 4.84403 4.89455 4.92218 5.00814 5.07270 5.17922 5.21902 5.36974 5.41136 5.55955 5.60874 5.72270 5.85125 6.24098 6.40878 6.51948 6.99037 7.17319 7.25094 7.95368 8.36843 9.27624 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.006823 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.725602 B = 4102.543966 C = 5080.515259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.215 3.785 5 N -0.439 5.439 6 C 0.064 3.936 7 C -0.095 4.095 8 C 0.603 3.397 9 O -0.581 6.581 10 N -0.674 5.674 11 C 0.120 3.880 12 H 0.039 0.961 13 C -0.145 4.145 14 C 0.143 3.857 15 N -0.609 5.609 16 C 0.177 3.823 17 C -0.263 4.263 18 H 0.064 0.936 19 C -0.041 4.041 20 N -0.912 5.912 21 Si 0.952 3.048 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.302 1.302 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.263 0.737 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.078 0.922 32 H 0.402 0.598 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.012 0.988 40 H 0.029 0.971 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.486 -0.592 -0.267 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 N -0.249 5.249 4 C -0.067 4.067 5 N -0.122 5.122 6 C -0.077 4.077 7 C -0.212 4.212 8 C 0.387 3.613 9 O -0.460 6.460 10 N -0.323 5.323 11 C 0.013 3.987 12 H 0.058 0.942 13 C -0.204 4.204 14 C 0.016 3.984 15 N -0.331 5.331 16 C 0.032 3.968 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.237 4.237 20 N -0.558 5.558 21 Si 0.782 3.218 22 H -0.197 1.197 23 H -0.220 1.220 24 H -0.229 1.229 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.278 0.722 29 H 0.109 0.891 30 H 0.152 0.848 31 H 0.097 0.903 32 H 0.238 0.762 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.075 -0.203 -0.954 17.103 hybrid contribution -1.285 -0.399 -0.062 1.347 sum 15.790 -0.602 -1.016 15.834 Atomic orbital electron populations 1.19875 0.87764 1.00836 1.02908 1.20887 0.96359 0.87846 1.03440 1.69954 1.01999 1.30316 1.22667 1.25935 0.97298 0.81980 1.01492 1.45482 1.05461 1.08183 1.53070 1.22478 0.83647 0.96089 1.05448 1.20599 0.86424 0.94252 1.19876 1.16965 0.76950 0.83386 0.84004 1.90750 1.52964 1.69243 1.33064 1.45801 1.62206 1.16043 1.08213 1.21836 0.95311 0.80555 1.00976 0.94219 1.22015 0.98040 0.98930 1.01386 1.21376 0.91660 0.92940 0.92450 1.44042 1.04357 1.20182 1.64569 1.20598 0.94889 0.87846 0.93425 1.19395 0.86803 0.92086 1.41039 0.91784 1.25560 1.01126 0.95761 1.01282 1.70167 1.33377 0.97110 1.55172 0.85439 0.82598 0.77453 0.76291 1.19655 1.21955 1.22938 0.90705 0.91024 0.94317 0.72151 0.89112 0.84771 0.90311 0.76229 0.90346 0.90210 0.94035 0.91513 0.90673 0.96966 0.96906 0.95296 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.44 10.24 71.24 0.73 -1.71 16 2 C 0.05 1.87 7.15 41.96 0.30 2.17 16 3 N -0.53 -18.40 11.20 -187.59 -2.10 -20.50 16 4 C 0.22 5.17 12.52 180.33 2.26 7.43 16 5 N -0.44 -11.14 3.17 -539.80 -1.71 -12.85 16 6 C 0.06 0.92 11.07 127.77 1.41 2.33 16 7 C -0.09 -3.47 6.66 40.01 0.27 -3.20 16 8 C 0.60 24.25 6.69 86.47 0.58 24.83 16 9 O -0.58 -27.57 16.78 -4.27 -0.07 -27.64 16 10 N -0.67 -24.26 4.41 -446.42 -1.97 -26.23 16 11 C 0.12 4.29 2.84 44.99 0.13 4.42 16 12 H 0.04 1.80 7.65 -2.39 -0.02 1.78 16 13 C -0.14 -3.82 9.48 71.98 0.68 -3.13 16 14 C 0.14 5.08 5.33 86.38 0.46 5.54 16 15 N -0.61 -28.12 2.78 -726.92 -2.02 -30.14 16 16 C 0.18 8.03 7.59 127.77 0.97 9.00 16 17 C -0.26 -13.95 9.67 84.03 0.81 -13.13 16 18 H 0.06 3.38 7.84 -2.91 -0.02 3.35 16 19 C -0.04 -2.23 5.14 84.86 0.44 -1.79 16 20 N -0.91 -51.43 10.49 21.65 0.23 -51.21 16 21 Si 0.95 45.62 29.57 68.60 2.03 47.64 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 25 H 0.07 3.58 8.04 -2.38 -0.02 3.56 16 26 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.04 1.86 7.94 -2.39 -0.02 1.84 16 28 H 0.26 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.26 7.80 -2.38 -0.02 1.24 16 32 H 0.40 13.47 7.17 -92.71 -0.66 12.80 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.04 1.20 8.09 -2.39 -0.02 1.18 16 36 H 0.07 2.31 8.03 -2.38 -0.02 2.29 16 37 H 0.08 2.20 7.86 -2.39 -0.02 2.18 16 38 H 0.01 0.61 6.93 -2.39 -0.02 0.59 16 39 H 0.01 0.63 7.27 -2.39 -0.02 0.61 16 40 H 0.03 1.07 7.83 -2.39 -0.02 1.05 16 41 H 0.24 13.67 8.31 -92.70 -0.77 12.90 16 Total: -1.00 -74.76 343.65 3.77 -70.99 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.36 Total: 17.19 kcal Atomic # 6 Polarization: 23.72 SS G_CDS: 9.04 Total: 32.75 kcal Atomic # 7 Polarization: -133.35 SS G_CDS: -7.58 Total: -140.93 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.07 Total: -27.64 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -74.76 3.77 -70.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268734708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.444 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds