Wall clock time and date at job start Tue Mar 31 2020 01:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00044 * 2 1 4 4 C 1.34770 * 119.99897 * 179.97438 * 2 1 3 5 5 O 1.21539 * 120.00003 * 0.02562 * 4 2 1 6 6 C 1.47647 * 120.00067 * 180.02562 * 4 2 1 7 7 C 1.34203 * 120.00437 * 188.39481 * 6 4 2 8 8 C 1.47651 * 119.99808 * 30.64342 * 7 6 4 9 9 O 1.21533 * 119.99987 * 6.13973 * 8 7 6 10 10 N 1.34781 * 120.00059 * 186.13301 * 8 7 6 11 11 C 1.46499 * 119.99888 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47037 * 269.99719 * 11 10 8 13 13 H 1.07998 * 119.99778 * 0.02562 * 12 11 10 14 14 C 1.37868 * 119.99704 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00749 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99710 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47201 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47435 * 120.00031 * 16 14 12 19 19 H 1.48507 * 109.47033 * 239.99769 * 16 14 12 20 20 C 1.46503 * 119.99851 * 0.02562 * 10 8 7 21 21 C 1.52998 * 109.46897 * 270.00137 * 20 10 8 22 22 C 1.52996 * 117.51804 * 116.28866 * 21 20 10 23 23 C 1.53001 * 60.00387 * 107.47717 * 22 21 20 24 24 H 1.09003 * 109.47575 * 270.00786 * 1 2 3 25 25 H 1.09002 * 109.47407 * 30.00449 * 1 2 3 26 26 H 1.09003 * 109.47193 * 149.99849 * 1 2 3 27 27 H 1.08999 * 109.46941 * 270.00076 * 3 2 1 28 28 H 1.09000 * 109.47055 * 29.99322 * 3 2 1 29 29 H 1.08993 * 109.47373 * 149.99813 * 3 2 1 30 30 H 1.08007 * 120.00106 * 8.38705 * 6 4 2 31 31 H 1.07995 * 120.00359 * 210.64862 * 7 6 4 32 32 H 1.09001 * 109.47315 * 30.00311 * 11 10 8 33 33 H 1.09004 * 109.46602 * 150.00246 * 11 10 8 34 34 H 0.96998 * 120.00722 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47193 * 150.00150 * 20 10 8 36 36 H 1.08997 * 109.46971 * 29.99694 * 20 10 8 37 37 H 1.09004 * 115.55364 * 330.57706 * 21 20 10 38 38 H 1.08999 * 117.50065 * 214.96652 * 22 21 20 39 39 H 1.09000 * 117.50186 * 359.97438 * 22 21 20 40 40 H 1.08997 * 117.49845 * 252.51124 * 23 22 21 41 41 H 1.08998 * 117.49774 * 107.49056 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5311 -2.2197 0.0005 6 6 3.6153 -1.1672 0.0011 7 6 4.2864 -2.3170 -0.1681 8 6 3.7031 -3.3987 -0.9865 9 8 2.6699 -3.2087 -1.5975 10 7 4.3167 -4.5967 -1.0561 11 6 3.7382 -5.6698 -1.8685 12 6 2.7932 -6.4854 -1.0243 13 1 2.6386 -6.2297 0.0136 14 6 2.1260 -7.5579 -1.5768 15 7 2.3138 -7.8691 -2.8407 16 14 0.9540 -8.5685 -0.5304 17 1 0.9191 -8.0163 0.8476 18 1 -0.4078 -8.5150 -1.1202 19 1 1.4194 -9.9781 -0.4868 20 6 5.5620 -4.8259 -0.3192 21 6 6.7536 -4.4511 -1.2027 22 6 7.6381 -3.2909 -0.7418 23 6 8.1547 -4.7284 -0.6539 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 2.3791 1.5834 -1.0277 28 1 1.6084 2.0284 0.5137 29 1 3.1499 1.1385 0.5138 30 1 4.1553 -0.2418 0.1375 31 1 5.2531 -2.4511 0.2945 32 1 3.1941 -5.2370 -2.7081 33 1 4.5355 -6.3112 -2.2441 34 1 1.8446 -8.6239 -3.2294 35 1 5.6318 -5.8777 -0.0419 36 1 5.5698 -4.2114 0.5810 37 1 6.6002 -4.5719 -2.2751 38 1 8.0665 -2.6483 -1.5109 39 1 7.3709 -2.7940 0.1908 40 1 8.2275 -5.1773 0.3367 41 1 8.9230 -5.0314 -1.3652 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293065821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:32 Heat of formation + Delta-G solvation = 3.577759 kcal Electronic energy + Delta-G solvation = -22367.813295 eV Core-core repulsion = 19057.612708 eV Total energy + Delta-G solvation = -3310.200588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78072 -38.69211 -37.08853 -35.25649 -34.26884 -32.78614 -32.26648 -28.40657 -27.76014 -26.46660 -25.92603 -23.80681 -22.29447 -21.81948 -20.66281 -19.37819 -17.76219 -17.50735 -16.33722 -16.16231 -15.73501 -15.44999 -15.06906 -14.68903 -14.43704 -14.08099 -13.49548 -13.26087 -12.99759 -12.87291 -12.67482 -12.56271 -12.45165 -12.04800 -11.91497 -11.76414 -11.45034 -11.36028 -11.11995 -10.75922 -10.53988 -10.29971 -10.01102 -9.81625 -9.63667 -9.48550 -9.21690 -8.57616 -8.39852 -8.32816 -7.50925 -5.93541 -3.96598 1.00637 3.18862 3.37784 3.45290 3.49388 3.52774 3.85598 4.09780 4.12576 4.55861 4.70703 4.84994 4.99056 5.01986 5.05014 5.19854 5.29942 5.32498 5.40502 5.45238 5.52592 5.58256 5.64533 5.68828 5.86645 5.94044 6.00698 6.09434 6.14229 6.17968 6.21639 6.49694 6.62806 7.18024 7.53919 7.55734 7.67790 8.04180 8.35779 8.53599 8.58674 9.04166 9.26889 9.67996 11.14676 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.006520 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.996882 B = 4293.195699 C = 6402.981470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.630 5.630 3 C 0.082 3.918 4 C 0.531 3.469 5 O -0.478 6.478 6 C -0.162 4.162 7 C -0.107 4.107 8 C 0.524 3.476 9 O -0.500 6.500 10 N -0.591 5.591 11 C 0.248 3.752 12 C -0.517 4.517 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.285 1.285 20 C 0.142 3.858 21 C -0.165 4.165 22 C -0.186 4.186 23 C -0.177 4.177 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.042 0.958 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 16.993 6.975 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.367 5.367 3 C -0.062 4.062 4 C 0.319 3.681 5 O -0.350 6.350 6 C -0.185 4.185 7 C -0.130 4.130 8 C 0.310 3.690 9 O -0.375 6.375 10 N -0.323 5.323 11 C 0.129 3.871 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.537 5.537 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C 0.017 3.983 21 C -0.184 4.184 22 C -0.223 4.223 23 C -0.214 4.214 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.573 16.335 6.485 19.138 hybrid contribution -0.420 -0.408 0.525 0.787 sum 7.153 15.927 7.010 18.814 Atomic orbital electron populations 1.21552 0.79426 1.03080 1.01285 1.47648 1.06869 1.06109 1.76122 1.21762 0.97208 0.85606 1.01616 1.18730 0.88141 0.83391 0.77870 1.90958 1.69247 1.30041 1.44771 1.23270 0.93710 0.98189 1.03289 1.23888 1.00911 0.94241 0.93920 1.18442 0.84477 0.82487 0.83569 1.90811 1.21064 1.80532 1.45083 1.48100 1.23047 1.12706 1.48478 1.19257 0.93509 0.83421 0.90879 1.21485 1.24916 1.11851 0.97386 0.92383 1.24911 0.96762 0.97446 0.95025 1.69943 1.43175 1.28641 1.11986 0.86456 0.80941 0.79501 0.80622 1.19791 1.20954 1.21090 1.21024 0.82387 1.02326 0.92540 1.22989 0.91679 1.02455 1.01299 1.23039 1.05044 0.91434 1.02773 1.22899 0.97184 0.98681 1.02658 0.93271 0.91740 0.90275 0.92855 0.91427 0.91030 0.84350 0.84422 0.93965 0.95038 0.92939 0.89379 0.91640 0.87337 0.89141 0.89054 0.88743 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 10.44 59.85 0.62 1.75 16 2 N -0.63 -8.69 3.27 -190.73 -0.62 -9.32 16 3 C 0.08 0.69 10.21 59.85 0.61 1.30 16 4 C 0.53 9.59 7.00 -12.42 -0.09 9.50 16 5 O -0.48 -11.48 12.97 -19.44 -0.25 -11.73 16 6 C -0.16 -2.37 9.16 -37.16 -0.34 -2.71 16 7 C -0.11 -1.74 9.05 -37.16 -0.34 -2.08 16 8 C 0.52 11.83 7.06 -12.42 -0.09 11.74 16 9 O -0.50 -13.71 12.91 -19.43 -0.25 -13.96 16 10 N -0.59 -13.18 2.46 -176.25 -0.43 -13.61 16 11 C 0.25 6.78 5.16 -5.19 -0.03 6.76 16 12 C -0.52 -15.47 9.39 -34.44 -0.32 -15.80 16 13 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 16 Si 0.90 23.07 29.54 -169.99 -5.02 18.04 16 17 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 C 0.14 2.38 5.37 -4.04 -0.02 2.36 16 21 C -0.16 -2.32 6.01 -90.62 -0.54 -2.86 16 22 C -0.19 -2.00 9.72 -26.73 -0.26 -2.26 16 23 C -0.18 -1.96 10.25 -26.73 -0.27 -2.24 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 26 H 0.08 1.24 7.42 -51.93 -0.39 0.85 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 29 H 0.07 0.49 6.01 -51.93 -0.31 0.18 16 30 H 0.14 1.31 6.18 -52.48 -0.32 0.99 16 31 H 0.14 1.71 5.05 -52.49 -0.27 1.44 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 33 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 36 H 0.07 0.93 5.92 -51.93 -0.31 0.63 16 37 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.85 7.24 -51.93 -0.38 0.48 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -38.55 342.52 -7.96 -46.51 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.11 Total: -1.31 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.16 Total: 7.16 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.32 Total: -49.87 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.50 Total: -25.70 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -38.55 -7.96 -46.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293065821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.091 kcal (2) G-P(sol) polarization free energy of solvation -38.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds