Wall clock time and date at job start Tue Mar 31 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33318 * 126.10201 * 2 1 4 4 C 1.30858 * 109.67909 * 180.27638 * 3 2 1 5 5 N 1.34496 * 109.16511 * 359.76558 * 4 3 2 6 6 H 0.97001 * 126.46800 * 179.97438 * 5 4 3 7 7 C 1.36661 * 126.10793 * 179.87922 * 2 1 3 8 8 C 1.46771 * 126.84547 * 0.02562 * 7 2 1 9 9 O 1.21685 * 119.99753 * 359.70617 * 8 7 2 10 10 N 1.34769 * 120.00042 * 179.70728 * 8 7 2 11 11 C 1.46502 * 119.99943 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46925 * 180.02562 * 11 10 8 13 13 H 1.09008 * 109.47064 * 295.00202 * 12 11 10 14 14 N 1.46493 * 109.47375 * 54.99871 * 12 11 10 15 15 C 1.36936 * 120.00314 * 204.99797 * 14 12 11 16 16 H 1.08001 * 120.00159 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99842 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99540 * 179.72505 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72270 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72118 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72153 * 19 17 15 23 23 C 1.52999 * 109.47083 * 175.00128 * 12 11 10 24 24 C 1.53003 * 109.47010 * 59.99777 * 23 12 11 25 25 C 1.52997 * 109.47278 * 179.97438 * 23 12 11 26 26 H 1.08998 * 109.47297 * 270.11653 * 1 2 3 27 27 H 1.09002 * 109.47440 * 30.11885 * 1 2 3 28 28 H 1.09005 * 109.46899 * 150.11658 * 1 2 3 29 29 H 1.08001 * 125.41699 * 179.74997 * 4 3 2 30 30 H 0.97003 * 119.99812 * 359.97438 * 10 8 7 31 31 H 1.08997 * 109.46993 * 60.00477 * 11 10 8 32 32 H 1.08999 * 109.47017 * 299.99897 * 11 10 8 33 33 H 0.97000 * 120.00040 * 24.99929 * 14 12 11 34 34 H 0.96999 * 119.99889 * 180.27497 * 18 17 15 35 35 H 1.08995 * 109.47098 * 300.00077 * 23 12 11 36 36 H 1.09008 * 109.46965 * 60.00032 * 24 23 12 37 37 H 1.08996 * 109.47077 * 179.97438 * 24 23 12 38 38 H 1.08996 * 109.47248 * 300.00159 * 24 23 12 39 39 H 1.09003 * 109.47146 * 59.99973 * 25 23 12 40 40 H 1.08996 * 109.47253 * 180.02562 * 25 23 12 41 41 H 1.09008 * 109.47122 * 300.00229 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6121 -0.6362 -0.0048 6 1 4.4189 -1.1748 -0.0087 7 6 2.3124 -1.1041 0.0023 8 6 1.8821 -2.5073 0.0048 9 8 0.6963 -2.7800 0.0102 10 7 2.8004 -3.4937 0.0009 11 6 2.3710 -4.8944 0.0039 12 6 3.6006 -5.8048 -0.0008 13 1 4.1470 -5.6727 -0.9347 14 7 4.4695 -5.4579 1.1265 15 6 5.8094 -5.7344 1.0686 16 1 6.2257 -6.2079 0.1918 17 6 6.6326 -5.4061 2.1370 18 7 7.9196 -5.6768 2.0836 19 14 5.9125 -4.5877 3.6540 20 1 5.9625 -3.1125 3.4913 21 1 4.5021 -5.0192 3.8268 22 1 6.7004 -4.9808 4.8497 23 6 3.1559 -7.2631 0.1280 24 6 2.2484 -7.6254 -1.0493 25 6 4.3855 -8.1736 0.1227 26 1 -0.3634 0.0021 1.0276 27 1 -0.3634 0.8889 -0.5157 28 1 -0.3633 -0.8911 -0.5121 29 1 4.3969 1.3745 -0.0112 30 1 3.7458 -3.2763 -0.0038 31 1 1.7690 -5.0917 -0.8830 32 1 1.7775 -5.0905 0.8970 33 1 4.0957 -5.0323 1.9139 34 1 8.4941 -5.4510 2.8318 35 1 2.6096 -7.3952 1.0619 36 1 2.7948 -7.4933 -1.9833 37 1 1.9320 -8.6644 -0.9578 38 1 1.3725 -6.9768 -1.0460 39 1 5.0323 -7.9156 0.9612 40 1 4.0686 -9.2125 0.2140 41 1 4.9315 -8.0414 -0.8115 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319968721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:12 Heat of formation + Delta-G solvation = 18.391405 kcal Electronic energy + Delta-G solvation = -22388.335596 eV Core-core repulsion = 19111.070127 eV Total energy + Delta-G solvation = -3277.265469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24912 -39.28746 -37.42752 -34.34458 -33.25050 -33.08583 -31.27387 -30.87277 -28.59140 -27.01178 -26.29777 -23.99939 -22.84369 -21.87717 -20.84912 -20.00837 -19.50740 -18.78952 -17.56921 -16.07458 -15.89360 -15.79793 -15.31718 -14.53337 -14.40168 -14.20925 -14.02531 -13.61709 -13.09828 -13.02142 -12.95955 -12.78000 -12.57297 -12.26426 -12.10781 -11.71655 -11.34980 -11.20572 -10.99581 -10.76992 -10.47334 -10.32847 -10.25320 -10.11539 -10.07300 -9.79308 -9.60843 -9.08291 -8.98263 -8.48636 -7.46731 -5.93987 -3.30664 1.28511 2.79434 2.85228 3.20137 3.27794 3.28806 3.34319 3.36713 4.38585 4.42008 4.81417 5.00628 5.04279 5.14841 5.20624 5.31594 5.50425 5.57736 5.66168 5.68073 5.79191 5.82120 5.91087 5.98006 6.04915 6.10700 6.20650 6.31408 6.39145 6.48407 6.51402 6.54699 6.71010 6.91959 7.12092 7.25296 7.56772 7.81864 7.85696 8.23492 8.24978 9.01822 9.74045 9.93371 11.23347 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.005901 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.263563 B = 4743.567623 C = 6171.379456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.090 3.910 3 N -0.503 5.503 4 C 0.218 3.782 5 N -0.552 5.552 6 H 0.427 0.573 7 C -0.090 4.090 8 C 0.590 3.410 9 O -0.533 6.533 10 N -0.716 5.716 11 C 0.111 3.889 12 C 0.174 3.826 13 H 0.063 0.937 14 N -0.747 5.747 15 C -0.244 4.244 16 H 0.095 0.905 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.878 3.122 20 H -0.287 1.287 21 H -0.277 1.277 22 H -0.291 1.291 23 C -0.108 4.108 24 C -0.149 4.149 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.215 0.785 30 H 0.403 0.597 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.032 0.968 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 6.444 -5.706 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.044 4.044 3 N -0.223 5.223 4 C -0.066 4.066 5 N -0.157 5.157 6 H 0.267 0.733 7 C -0.206 4.206 8 C 0.377 3.623 9 O -0.410 6.410 10 N -0.367 5.367 11 C -0.013 4.013 12 C 0.064 3.936 13 H 0.081 0.919 14 N -0.390 5.390 15 C -0.373 4.373 16 H 0.113 0.887 17 C -0.187 4.187 18 N -0.575 5.575 19 Si 0.708 3.292 20 H -0.214 1.214 21 H -0.203 1.203 22 H -0.217 1.217 23 C -0.130 4.130 24 C -0.207 4.207 25 C -0.197 4.197 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.231 0.769 30 H 0.239 0.761 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.194 0.806 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.480 6.933 -5.766 13.825 hybrid contribution 1.084 -0.426 1.305 1.749 sum -9.396 6.507 -4.460 12.269 Atomic orbital electron populations 1.20265 0.86607 1.03468 1.02927 1.21049 0.96856 0.86676 0.99828 1.70125 1.00481 1.30484 1.21223 1.25128 0.97363 0.82184 1.01967 1.43423 1.08325 1.08907 1.55004 0.73342 1.21017 0.84361 0.95281 1.19898 1.16848 0.85948 0.82651 0.76896 1.90788 1.16057 1.83030 1.51162 1.45926 1.09870 1.06568 1.74317 1.21849 0.97942 0.79340 1.02152 1.20550 0.89212 0.91145 0.92679 0.91930 1.42869 1.05899 1.73575 1.16687 1.19050 0.81562 1.33759 1.02966 0.88695 1.24656 0.95265 1.01103 0.97712 1.69687 1.03256 1.52489 1.32105 0.86675 0.78478 0.79460 0.84557 1.21385 1.20333 1.21684 1.21690 0.96604 0.97056 0.97651 1.21943 0.99328 1.00688 0.98784 1.21823 0.97782 0.96527 1.03538 0.90916 0.91268 0.89302 0.76855 0.76146 0.90779 0.91579 0.80552 0.92940 0.91946 0.92999 0.93335 0.93016 0.89332 0.94889 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.88 36.01 0.36 -0.60 16 2 C 0.09 1.32 7.15 -82.51 -0.59 0.73 16 3 N -0.50 -7.00 11.20 -10.64 -0.12 -7.12 16 4 C 0.22 2.37 13.01 -90.57 -1.18 1.19 16 5 N -0.55 -6.34 6.07 -10.79 -0.07 -6.40 16 6 H 0.43 4.07 8.32 -40.82 -0.34 3.73 16 7 C -0.09 -1.29 7.08 -82.14 -0.58 -1.87 16 8 C 0.59 9.28 7.79 -12.82 -0.10 9.18 16 9 O -0.53 -9.46 14.82 5.20 0.08 -9.38 16 10 N -0.72 -10.63 5.38 -61.59 -0.33 -10.96 16 11 C 0.11 1.67 4.73 -4.04 -0.02 1.65 16 12 C 0.17 2.88 2.18 -67.93 -0.15 2.73 16 13 H 0.06 1.07 8.08 -51.92 -0.42 0.65 16 14 N -0.75 -15.08 4.24 -53.43 -0.23 -15.31 16 15 C -0.24 -5.93 8.05 -15.06 -0.12 -6.05 16 16 H 0.10 2.51 7.63 -52.49 -0.40 2.11 16 17 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 18 N -0.93 -26.83 13.97 55.49 0.78 -26.05 16 19 Si 0.88 20.51 27.74 -169.99 -4.72 15.79 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.27 6.51 56.52 0.37 -5.91 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C -0.11 -1.70 2.69 -90.62 -0.24 -1.94 16 24 C -0.15 -1.93 8.84 37.16 0.33 -1.60 16 25 C -0.14 -2.42 8.26 37.16 0.31 -2.11 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.19 6.49 -51.93 -0.34 0.86 16 29 H 0.22 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.40 5.80 7.38 -40.82 -0.30 5.49 16 31 H 0.07 1.04 6.71 -51.93 -0.35 0.70 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.36 7.52 5.65 -40.82 -0.23 7.29 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.62 6.54 -51.93 -0.34 0.28 16 39 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -30.72 333.62 -7.67 -38.39 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.00 Total: 14.56 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.09 Total: 1.46 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: 0.03 Total: -65.85 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.72 Total: 15.79 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.72 -7.67 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319968721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.777 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds