Wall clock time and date at job start Tue Mar 31 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 114.00393 * 2 1 4 4 C 1.52998 * 109.47435 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47306 * 305.00557 * 4 3 2 6 6 C 1.53001 * 109.47318 * 185.00476 * 4 3 2 7 7 C 1.52997 * 109.47019 * 175.00357 * 6 4 3 8 8 N 1.46502 * 109.47351 * 180.02562 * 7 6 4 9 9 C 1.38821 * 120.00153 * 179.72576 * 8 7 6 10 10 C 1.39787 * 119.58728 * 0.26717 * 9 8 7 11 11 C 1.38594 * 119.49447 * 179.97438 * 10 9 8 12 12 C 1.38389 * 118.68137 * 0.02562 * 11 10 9 13 13 C 1.40555 * 119.14744 * 359.97438 * 12 11 10 14 14 C 1.41318 * 119.78834 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99473 * 353.78340 * 14 13 12 16 16 C 1.40021 * 120.00202 * 173.77960 * 14 13 12 17 17 N 1.30739 * 120.00272 * 6.34752 * 16 14 13 18 18 Si 1.86804 * 119.99979 * 186.35174 * 16 14 13 19 19 H 1.48493 * 109.47383 * 94.98247 * 18 16 14 20 20 H 1.48496 * 109.47041 * 214.98400 * 18 16 14 21 21 H 1.48500 * 109.46800 * 334.98368 * 18 16 14 22 22 N 1.31960 * 119.58223 * 180.02562 * 9 8 7 23 23 O 1.42903 * 109.46941 * 65.00142 * 4 3 2 24 24 C 1.42899 * 114.00102 * 269.99979 * 23 4 3 25 25 H 1.08999 * 109.46819 * 59.99199 * 1 2 3 26 26 H 1.08999 * 109.47424 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46607 * 299.99492 * 1 2 3 28 28 H 1.09008 * 109.46839 * 60.00783 * 3 2 1 29 29 H 1.09000 * 109.47524 * 300.00754 * 3 2 1 30 30 H 1.08993 * 109.47019 * 55.00152 * 6 4 3 31 31 H 1.08995 * 109.47047 * 294.99992 * 6 4 3 32 32 H 1.08998 * 109.47656 * 59.99653 * 7 6 4 33 33 H 1.09009 * 109.47019 * 299.99780 * 7 6 4 34 34 H 0.97005 * 119.99272 * 359.97438 * 8 7 6 35 35 H 1.08002 * 120.25814 * 359.96145 * 10 9 8 36 36 H 1.08003 * 120.66214 * 180.02562 * 11 10 9 37 37 H 1.08000 * 120.42803 * 179.97438 * 12 11 10 38 38 H 0.96998 * 120.00330 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.47363 * 299.99696 * 24 23 4 40 40 H 1.09005 * 109.46828 * 60.00478 * 24 23 4 41 41 H 1.09000 * 109.46935 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8516 0.5680 0.8409 6 6 4.1575 2.5767 0.1252 7 6 5.6769 2.4471 0.2499 8 7 6.2725 3.7801 0.3710 9 6 7.6477 3.9165 0.5028 10 6 8.4565 2.7765 0.5134 11 6 9.8293 2.9150 0.6446 12 6 10.3602 4.1875 0.7625 13 6 9.4946 5.2948 0.7450 14 6 10.0222 6.6004 0.8639 15 1 11.0732 6.7414 1.0681 16 6 9.1823 7.7110 0.7168 17 7 7.8917 7.5429 0.5935 18 14 9.9060 9.4331 0.6967 19 1 10.1285 9.8601 -0.7080 20 1 8.9649 10.3732 1.3567 21 1 11.1999 9.4348 1.4254 22 7 8.1753 5.1211 0.6118 23 8 3.9649 0.5795 -1.2220 24 6 4.0463 -0.8461 -1.1673 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 1.6888 1.8462 0.8901 29 1 1.6887 1.8464 -0.8899 30 1 3.7613 3.0729 1.0110 31 1 3.9145 3.1646 -0.7599 32 1 6.0732 1.9508 -0.6360 33 1 5.9200 1.8591 1.1350 34 1 5.7055 4.5671 0.3626 35 1 8.0152 1.7952 0.4202 36 1 10.4720 2.0471 0.6546 37 1 11.4259 4.3281 0.8666 38 1 7.3099 8.3123 0.4912 39 1 4.7575 -1.1401 -0.3955 40 1 3.0645 -1.2573 -0.9325 41 1 4.3785 -1.2283 -2.1325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328574521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:50 Heat of formation + Delta-G solvation = -58.215871 kcal Electronic energy + Delta-G solvation = -21389.456964 eV Core-core repulsion = 18076.576804 eV Total energy + Delta-G solvation = -3312.880161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.12505 -38.17624 -37.20074 -35.40238 -33.42539 -32.25527 -30.34021 -29.35833 -27.76156 -26.59064 -25.89620 -25.27932 -22.94911 -21.66113 -20.92361 -20.23929 -17.33698 -17.20419 -16.79348 -16.17816 -16.01500 -15.51087 -14.91070 -14.74239 -14.48416 -14.41289 -14.04955 -13.96312 -13.19317 -12.93501 -12.79548 -12.36561 -12.26575 -12.02757 -11.87281 -11.47214 -11.36894 -11.16145 -11.13590 -10.94709 -10.83281 -10.55670 -10.37579 -9.98575 -9.87268 -9.58095 -9.40973 -8.81927 -7.85318 -7.45534 -6.44768 -6.29135 -4.42160 2.91562 3.13896 3.17613 3.29156 3.34714 3.38000 3.70389 4.02081 4.30027 4.70494 4.88320 4.90537 4.96842 5.03826 5.15330 5.26802 5.28800 5.35516 5.37071 5.44200 5.55022 5.64011 5.78017 5.85044 6.06519 6.20691 6.24382 6.33389 6.64686 6.83496 6.91890 6.94936 7.00788 7.15154 7.29975 7.65757 7.87156 7.97627 8.22487 8.42379 8.74788 8.85710 9.17762 10.29619 10.45391 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.003218 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.706221 B = 8697.770130 C = 9587.335344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.038 3.962 4 C 0.098 3.902 5 H 0.071 0.929 6 C -0.126 4.126 7 C 0.147 3.853 8 N -0.740 5.740 9 C 0.412 3.588 10 C -0.365 4.365 11 C -0.033 4.033 12 C -0.317 4.317 13 C 0.292 3.708 14 C -0.436 4.436 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.717 5.717 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.533 5.533 23 O -0.377 6.377 24 C 0.031 3.969 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.394 0.606 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.269 0.731 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 -10.779 -0.919 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.038 4.038 4 C 0.039 3.961 5 H 0.089 0.911 6 C -0.164 4.164 7 C 0.021 3.979 8 N -0.377 5.377 9 C 0.172 3.828 10 C -0.391 4.391 11 C -0.057 4.057 12 C -0.340 4.340 13 C 0.165 3.835 14 C -0.468 4.468 15 H 0.101 0.899 16 C -0.153 4.153 17 N -0.339 5.339 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.254 5.254 23 O -0.295 6.295 24 C -0.065 4.065 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.970 -10.203 -1.127 17.336 hybrid contribution 0.263 0.282 0.183 0.427 sum -13.707 -9.920 -0.944 16.947 Atomic orbital electron populations 1.22737 0.81152 1.02621 1.00011 1.87856 1.19701 1.27948 1.95443 1.23238 0.94479 0.85039 1.01093 1.22041 0.90748 0.95069 0.88202 0.91079 1.21781 0.96207 0.94908 1.03476 1.20926 0.90512 0.85812 1.00648 1.44113 1.04167 1.06251 1.83147 1.18512 0.84007 0.90581 0.89726 1.20615 0.94174 0.96316 1.27999 1.20599 0.93961 0.95880 0.95258 1.21532 0.98753 0.93360 1.20364 1.18206 0.86198 0.92528 0.86534 1.19568 0.95868 0.89329 1.42084 0.89906 1.26042 0.94605 1.01027 0.93638 1.70156 1.03613 1.31109 1.29008 0.86369 0.79952 0.81660 0.79103 1.19606 1.20293 1.18591 1.68213 1.13372 1.18997 1.24854 1.87924 1.87833 1.19995 1.33789 1.22835 1.00800 0.80999 1.01904 0.94054 0.89740 0.94101 0.92304 0.92273 0.89914 0.90172 0.92227 0.93429 0.77105 0.89200 0.88969 0.88731 0.92024 0.94274 0.92743 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.11 8.83 -40.08 -0.35 -4.46 16 3 C 0.04 0.39 5.60 37.16 0.21 0.60 16 4 C 0.10 1.14 2.50 -26.73 -0.07 1.07 16 5 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 6 C -0.13 -1.57 5.04 -26.73 -0.13 -1.71 16 7 C 0.15 2.38 4.78 -4.04 -0.02 2.37 16 8 N -0.74 -15.24 5.72 -60.39 -0.35 -15.58 16 9 C 0.41 10.38 7.65 -155.33 -1.19 9.19 16 10 C -0.37 -8.74 9.34 -38.87 -0.36 -9.10 16 11 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.32 -8.25 9.83 -38.65 -0.38 -8.63 16 13 C 0.29 8.35 6.54 -85.00 -0.56 7.79 16 14 C -0.44 -12.06 9.13 -37.74 -0.34 -12.41 16 15 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 16 C 0.07 1.87 5.49 -17.35 -0.10 1.77 16 17 N -0.72 -19.34 11.48 55.55 0.64 -18.71 16 18 Si 0.90 19.02 29.56 -169.99 -5.03 13.99 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 22 N -0.53 -15.10 7.91 -10.33 -0.08 -15.18 16 23 O -0.38 -4.99 9.88 -40.08 -0.40 -5.39 16 24 C 0.03 0.33 10.71 101.05 1.08 1.42 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.04 7.60 -51.93 -0.39 0.64 16 33 H 0.05 0.77 7.92 -51.92 -0.41 0.36 16 34 H 0.39 7.97 8.59 -40.82 -0.35 7.62 16 35 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 36 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 39 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.05 0.57 6.40 -51.93 -0.33 0.24 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -31.61 342.94 -7.98 -39.59 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.44 Total: 8.04 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.14 Total: -7.47 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.21 Total: -49.47 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.75 Total: -9.85 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.61 -7.98 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328574521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.626 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds