Wall clock time and date at job start Tue Mar 31 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99904 * 2 1 4 4 C 1.46900 * 110.99869 * 123.95421 * 2 1 3 5 5 C 1.50702 * 109.47452 * 66.04821 * 4 2 1 6 6 C 1.35135 * 125.61301 * 89.99446 * 5 4 2 7 7 C 1.40362 * 107.10939 * 180.02562 * 6 5 4 8 8 C 1.36545 * 106.71195 * 0.02562 * 7 6 5 9 9 C 1.46658 * 125.98797 * 179.97438 * 8 7 6 10 10 O 1.21693 * 120.00161 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99639 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72443 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47129 * 60.00316 * 19 17 15 21 21 H 1.48498 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47240 * 300.00255 * 19 17 15 23 23 O 1.33922 * 125.61589 * 270.32671 * 5 4 2 24 24 H 1.09003 * 109.47465 * 296.04513 * 1 2 3 25 25 H 1.08993 * 109.47416 * 56.04741 * 1 2 3 26 26 H 1.09007 * 109.47269 * 176.04568 * 1 2 3 27 27 H 1.08999 * 109.47194 * 183.95170 * 3 2 1 28 28 H 1.08996 * 109.47454 * 303.95782 * 3 2 1 29 29 H 1.09002 * 109.46845 * 63.95275 * 3 2 1 30 30 H 1.08999 * 109.47006 * 306.04314 * 4 2 1 31 31 H 1.09002 * 109.47127 * 186.04749 * 4 2 1 32 32 H 1.07993 * 126.44513 * 0.03823 * 6 5 4 33 33 H 1.08007 * 126.64372 * 179.97438 * 7 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 36 36 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 37 37 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 38 38 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 39 39 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 40 40 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 41 41 H 0.97000 * 120.00572 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6369 -2.2205 0.9729 6 6 2.3870 -3.1489 0.3393 7 6 1.6901 -4.3649 0.4153 8 6 0.5355 -4.1136 1.0995 9 6 -0.5074 -5.0938 1.4195 10 8 -0.3832 -6.2517 1.0662 11 7 -1.6034 -4.7122 2.1048 12 6 -2.6480 -5.6901 2.4192 13 6 -3.7756 -5.0015 3.1909 14 6 -4.8667 -6.0227 3.5186 15 6 -5.9771 -5.3446 4.2793 16 1 -5.9112 -4.2907 4.5058 17 6 -7.0770 -6.0697 4.6859 18 7 -7.1570 -7.3532 4.4105 19 14 -8.4536 -5.2291 5.6281 20 1 -9.0287 -4.1404 4.7979 21 1 -9.5121 -6.2204 5.9474 22 1 -7.9142 -4.6583 6.8885 23 8 0.5197 -2.8044 1.4249 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3634 -1.0253 -0.0709 27 1 3.0827 1.3433 -0.0708 28 1 1.5897 1.9164 -0.8523 29 1 1.7043 1.8723 0.9233 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1757 32 1 3.3430 -2.9860 -0.1360 33 1 2.0056 -5.3152 0.0103 34 1 -1.7026 -3.7892 2.3861 35 1 -3.0440 -6.1090 1.4940 36 1 -2.2261 -6.4893 3.0285 37 1 -3.3796 -4.5827 4.1160 38 1 -4.1976 -4.2023 2.5815 39 1 -5.2626 -6.4411 2.5933 40 1 -4.4451 -6.8222 4.1279 41 1 -7.9307 -7.8634 4.6969 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464980921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:06 Heat of formation + Delta-G solvation = -30.315351 kcal Electronic energy + Delta-G solvation = -20984.226733 eV Core-core repulsion = 17672.556429 eV Total energy + Delta-G solvation = -3311.670303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.88212 -39.31881 -37.76504 -35.53765 -33.52185 -33.14080 -31.58115 -30.90914 -27.98590 -27.78850 -26.36688 -23.71965 -22.76246 -21.96075 -21.31453 -20.67598 -20.03175 -18.15733 -16.84785 -16.46092 -16.25421 -15.74400 -15.57380 -15.46244 -14.99099 -14.47327 -14.38673 -13.97828 -13.73918 -13.16216 -13.13341 -13.03742 -12.56397 -12.49582 -12.29516 -12.05231 -11.98339 -11.85868 -11.77459 -10.89819 -10.77106 -10.65552 -10.27096 -10.17176 -9.89030 -9.45394 -9.15183 -9.04439 -8.90752 -8.60016 -8.37892 -6.02580 -4.05863 0.92083 2.14061 2.42897 3.22432 3.29642 3.31485 3.36337 3.38579 3.60979 4.23497 4.43512 4.60018 4.72949 4.77633 4.87113 4.96429 4.98648 5.18902 5.22403 5.33098 5.40811 5.48143 5.59639 5.61857 5.65226 5.73470 5.77897 6.11999 6.18754 6.35445 6.39717 6.47403 6.56262 6.67864 6.82184 6.96532 7.59169 7.61917 7.74429 7.95745 8.17367 8.36974 9.00438 9.58298 11.08686 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.002882 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.068793 B = 9712.355800 C =10868.975686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.544 5.544 3 C 0.024 3.976 4 C 0.131 3.869 5 C 0.015 3.985 6 C -0.197 4.197 7 C -0.125 4.125 8 C -0.067 4.067 9 C 0.595 3.405 10 O -0.523 6.523 11 N -0.713 5.713 12 C 0.115 3.885 13 C -0.121 4.121 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 O -0.163 6.163 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.767 15.954 -8.219 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.124 4.124 4 C 0.004 3.996 5 C -0.037 4.037 6 C -0.217 4.217 7 C -0.146 4.146 8 C -0.120 4.120 9 C 0.381 3.619 10 O -0.401 6.401 11 N -0.363 5.363 12 C -0.007 4.007 13 C -0.159 4.159 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 O -0.058 6.058 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.237 0.763 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.605 14.869 -8.695 26.857 hybrid contribution -1.021 1.140 1.277 1.993 sum 19.584 16.009 -7.418 26.360 Atomic orbital electron populations 1.22484 0.86395 1.03059 1.00967 1.62016 1.08937 1.14053 1.41852 1.22404 1.00922 0.87950 1.01098 1.20597 1.01105 0.84825 0.93056 1.22439 0.85940 0.95456 0.99870 1.21530 1.02894 0.92057 1.05185 1.21955 0.93171 0.99995 0.99455 1.22248 1.00058 0.81973 1.07718 1.16610 0.80588 0.85894 0.78856 1.90884 1.78085 1.17022 1.54153 1.46155 1.20106 1.14286 1.55718 1.21766 0.87304 0.91258 1.00418 1.21904 0.95389 1.00297 0.98332 1.19027 0.91716 0.93571 0.97021 1.21161 1.03649 0.95607 1.35778 0.92696 1.25025 0.98383 0.94857 0.96163 1.69950 1.30016 1.06741 1.46555 0.86638 0.81688 0.79185 0.80356 1.20236 1.21251 1.20249 1.84006 1.38413 1.21007 1.62420 0.94990 0.90906 0.90956 0.90992 0.90792 0.95210 0.92532 0.87345 0.82681 0.82206 0.76282 0.91287 0.91284 0.92624 0.92626 0.96193 0.96200 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.37 60.06 0.56 0.72 16 2 N -0.54 -4.19 5.01 -252.72 -1.27 -5.46 16 3 C 0.02 0.13 9.57 60.06 0.57 0.70 16 4 C 0.13 0.96 5.49 -4.98 -0.03 0.93 16 5 C 0.02 0.16 5.89 -35.41 -0.21 -0.05 16 6 C -0.20 -1.96 10.77 -39.89 -0.43 -2.39 16 7 C -0.13 -1.52 10.62 -39.39 -0.42 -1.93 16 8 C -0.07 -0.93 7.13 -36.80 -0.26 -1.19 16 9 C 0.60 9.63 7.79 -12.86 -0.10 9.53 16 10 O -0.52 -10.08 16.86 5.20 0.09 -9.99 16 11 N -0.71 -10.95 5.55 -61.62 -0.34 -11.30 16 12 C 0.11 2.04 5.67 -4.04 -0.02 2.02 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 O -0.16 -1.98 9.77 5.02 0.05 -1.93 16 24 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 26 H 0.07 0.72 6.79 -51.92 -0.35 0.36 16 27 H 0.07 0.30 8.12 -51.93 -0.42 -0.13 16 28 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 29 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.11 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.40 5.32 8.23 -40.82 -0.34 4.98 16 35 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -32.41 351.32 -8.05 -40.46 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.56 Total: -0.35 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.02 Total: -7.12 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.87 Total: -42.84 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.14 Total: -11.92 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.41 -8.05 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464980921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.145 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds