Wall clock time and date at job start Tue Mar 31 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.50697 * 126.04107 * 359.97438 * 3 2 1 5 5 C 1.50696 * 109.47207 * 85.00562 * 4 3 2 6 6 O 1.21284 * 119.99859 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00412 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00370 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47494 * 180.02562 * 8 7 5 10 10 H 1.08992 * 109.47147 * 64.99843 * 9 8 7 11 11 C 1.52998 * 109.47368 * 185.00244 * 9 8 7 12 12 N 1.46501 * 109.46813 * 305.00004 * 9 8 7 13 13 C 1.36936 * 120.00125 * 154.99997 * 12 9 8 14 14 H 1.08003 * 119.99992 * 359.97438 * 13 12 9 15 15 C 1.38813 * 120.00246 * 180.02562 * 13 12 9 16 16 N 1.31617 * 119.99890 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00044 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47101 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46811 * 119.99962 * 17 15 13 20 20 H 1.48497 * 109.47336 * 239.99631 * 17 15 13 21 21 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 22 22 N 1.30833 * 108.20100 * 359.97438 * 21 3 2 23 23 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 24 24 C 1.46500 * 126.03821 * 0.02628 * 23 2 1 25 25 H 1.08993 * 109.47472 * 269.97893 * 1 2 3 26 26 H 1.08999 * 109.47154 * 29.98470 * 1 2 3 27 27 H 1.09005 * 109.47110 * 149.98063 * 1 2 3 28 28 H 1.08997 * 109.47353 * 205.00304 * 4 3 2 29 29 H 1.08999 * 109.47199 * 325.00396 * 4 3 2 30 30 H 0.96996 * 119.99868 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.47419 * 300.00386 * 8 7 5 32 32 H 1.08999 * 109.47004 * 59.99943 * 8 7 5 33 33 H 1.09000 * 109.47169 * 59.99988 * 11 9 8 34 34 H 1.08997 * 109.47214 * 179.97438 * 11 9 8 35 35 H 1.08999 * 109.46842 * 299.99880 * 11 9 8 36 36 H 0.97007 * 120.00157 * 334.99652 * 12 9 8 37 37 H 0.97005 * 120.00039 * 180.02562 * 16 15 13 38 38 H 1.07995 * 125.89269 * 180.02562 * 21 3 2 39 39 H 1.09000 * 109.47005 * 269.99454 * 24 23 2 40 40 H 1.09003 * 109.46946 * 29.99763 * 24 23 2 41 41 H 1.09006 * 109.46968 * 149.99628 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 6 1.5711 2.9683 1.4146 6 8 1.7353 2.1935 2.3332 7 7 1.1443 4.2230 1.6595 8 6 0.8792 4.6512 3.0352 9 6 0.4095 6.1073 3.0346 10 1 -0.5487 6.1797 2.5204 11 6 0.2524 6.5931 4.4769 12 7 1.3983 6.9390 2.3442 13 6 1.0158 8.1199 1.7660 14 1 -0.0150 8.4379 1.8186 15 6 1.9526 8.9078 1.1113 16 7 3.2087 8.5200 1.0467 17 14 1.4305 10.5183 0.3220 18 1 -0.0249 10.7242 0.5332 19 1 2.1843 11.6392 0.9392 20 1 1.7172 10.4717 -1.1343 21 6 3.6335 0.6560 0.0006 22 7 3.6333 -0.6524 0.0015 23 7 2.3026 -1.0900 0.0005 24 6 1.8539 -2.4846 0.0006 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 2.6186 3.1586 -0.4348 29 1 0.9307 2.6155 -0.5903 30 1 1.0119 4.8422 0.9248 31 1 0.1039 4.0199 3.4693 32 1 1.7916 4.5636 3.6251 33 1 1.2108 6.5207 4.9911 34 1 -0.0818 7.6306 4.4764 35 1 -0.4833 5.9742 4.9906 36 1 2.3241 6.6532 2.2966 37 1 3.8634 9.0707 0.5895 38 1 4.5083 1.2892 0.0011 39 1 1.7424 -2.8303 1.0283 40 1 0.8956 -2.5579 -0.5136 41 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480476021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:39 Heat of formation + Delta-G solvation = 42.244592 kcal Electronic energy + Delta-G solvation = -21672.668125 eV Core-core repulsion = 18396.437008 eV Total energy + Delta-G solvation = -3276.231117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31424 -39.06915 -36.26554 -33.68994 -33.42771 -32.87610 -31.81056 -29.71521 -28.66087 -26.77522 -26.31716 -24.77018 -23.57680 -20.97220 -20.18537 -20.10441 -19.10046 -17.40997 -16.56450 -16.53287 -15.59317 -15.53446 -15.15548 -14.66850 -14.30602 -13.95913 -13.64124 -13.60488 -13.25754 -12.98649 -12.89360 -12.50251 -12.43497 -12.29862 -12.16549 -12.06056 -11.89891 -11.47013 -11.35117 -10.89592 -10.75371 -10.52394 -10.32577 -9.98931 -9.72342 -9.46379 -9.20561 -8.99370 -8.51310 -8.22445 -7.04078 -5.81855 -3.11974 1.88533 2.50120 2.81053 3.11113 3.39463 3.45769 3.47844 3.85078 4.43103 4.54320 4.61137 4.89747 4.96209 5.08066 5.18935 5.23764 5.32684 5.35376 5.45811 5.49907 5.58972 5.61289 5.67194 5.82855 5.94046 5.97741 6.11468 6.20306 6.23091 6.36686 6.57879 6.70536 6.77049 6.91462 7.03119 7.08935 7.65908 7.74884 8.07940 8.35683 8.73424 9.47644 10.03046 10.38798 11.40095 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.003500 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.570939 B = 7997.128300 C = 8553.364538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 C -0.214 4.214 4 C -0.062 4.062 5 C 0.509 3.491 6 O -0.549 6.549 7 N -0.716 5.716 8 C 0.117 3.883 9 C 0.160 3.840 10 H 0.053 0.947 11 C -0.163 4.163 12 N -0.724 5.724 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.929 5.929 17 Si 0.905 3.095 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C 0.065 3.935 22 N -0.303 5.303 23 N -0.378 5.378 24 C 0.103 3.897 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.410 0.590 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.182 0.818 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 -17.758 -3.383 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C -0.225 4.225 4 C -0.103 4.103 5 C 0.295 3.705 6 O -0.427 6.427 7 N -0.368 5.368 8 C -0.008 4.008 9 C 0.049 3.951 10 H 0.071 0.929 11 C -0.223 4.223 12 N -0.366 5.366 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.577 5.577 17 Si 0.736 3.264 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.121 4.121 22 N -0.124 5.124 23 N -0.161 5.161 24 C -0.038 4.038 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.246 0.754 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.199 0.801 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.846 -19.382 -2.794 20.436 hybrid contribution -0.333 1.968 -0.634 2.094 sum -6.178 -17.413 -3.428 18.792 Atomic orbital electron populations 1.20446 0.87609 1.03367 1.03516 1.20716 0.94291 0.87077 1.01050 1.19177 0.92509 0.93998 1.16845 1.19906 1.03193 0.92573 0.94618 1.20643 0.76780 0.81780 0.91296 1.90655 1.52253 1.53397 1.46401 1.46009 1.67472 1.13106 1.10197 1.21626 1.00447 0.95822 0.82926 1.20502 0.93930 0.87934 0.92684 0.92948 1.22366 1.00455 1.01261 0.98264 1.42485 1.07528 1.22198 1.64415 1.19262 0.94185 0.96749 1.27071 0.91109 1.24743 0.95509 0.99008 1.01472 1.69675 1.01219 1.38832 1.47996 0.86152 0.77537 0.83822 0.78839 1.20602 1.21942 1.21878 1.23721 0.97653 0.91960 0.98741 1.77314 0.96419 1.12969 1.25690 1.48271 1.04028 1.05691 1.58116 1.21769 1.00721 0.78159 1.03179 0.89983 0.89706 0.91453 0.87914 0.88795 0.75434 0.92158 0.92074 0.93241 0.92383 0.94259 0.78050 0.93510 0.80111 0.90971 0.89790 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.90 36.00 0.36 -0.47 16 2 C 0.10 1.22 6.93 -82.27 -0.57 0.65 16 3 C -0.21 -2.99 4.59 -105.05 -0.48 -3.47 16 4 C -0.06 -0.80 5.92 -29.04 -0.17 -0.97 16 5 C 0.51 8.28 7.82 -10.99 -0.09 8.19 16 6 O -0.55 -10.82 16.03 5.55 0.09 -10.73 16 7 N -0.72 -11.67 5.39 -60.30 -0.32 -11.99 16 8 C 0.12 1.99 5.23 -4.05 -0.02 1.97 16 9 C 0.16 2.97 3.05 -67.93 -0.21 2.76 16 10 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 11 C -0.16 -2.83 9.49 37.16 0.35 -2.47 16 12 N -0.72 -16.80 4.56 -53.43 -0.24 -17.04 16 13 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 14 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -26.86 13.06 55.49 0.72 -26.14 16 17 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.07 0.94 11.96 -17.36 -0.21 0.74 16 22 N -0.30 -4.57 12.57 30.62 0.39 -4.19 16 23 N -0.38 -4.83 4.01 -63.88 -0.26 -5.08 16 24 C 0.10 0.81 11.27 59.85 0.67 1.49 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.69 7.25 -51.93 -0.38 0.31 16 27 H 0.07 0.44 7.08 -51.93 -0.37 0.07 16 28 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.09 0.98 7.31 -51.93 -0.38 0.60 16 30 H 0.41 6.66 8.14 -40.82 -0.33 6.33 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.39 9.74 7.80 -40.82 -0.32 9.42 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.18 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.43 7.05 -51.93 -0.37 0.07 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -33.50 348.29 -6.34 -39.84 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.33 Total: 12.01 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.61 Total: 1.60 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: 0.28 Total: -64.44 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.50 -6.34 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480476021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.086 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds