Wall clock time and date at job start Tue Mar 31 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30845 * 125.89773 * 2 1 4 4 N 1.40088 * 108.20634 * 180.02562 * 3 2 1 5 5 H 0.96995 * 126.03721 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92166 * 359.75897 * 4 3 2 7 7 C 1.50703 * 126.12625 * 180.24315 * 6 4 3 8 8 C 1.35309 * 107.74729 * 0.38683 * 6 4 3 9 9 C 1.50701 * 126.03999 * 179.87646 * 8 6 4 10 10 C 1.50703 * 109.47355 * 269.71703 * 9 8 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 H 1.09000 * 109.47046 * 294.99604 * 14 13 12 16 16 C 1.53004 * 109.47336 * 175.00083 * 14 13 12 17 17 N 1.46494 * 109.47509 * 54.99655 * 14 13 12 18 18 C 1.36934 * 120.00488 * 205.00279 * 17 14 13 19 19 H 1.08003 * 119.99785 * 359.97438 * 18 17 14 20 20 C 1.38817 * 120.00391 * 179.97438 * 18 17 14 21 21 N 1.31621 * 119.99622 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00020 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47035 * 60.00563 * 22 20 18 24 24 H 1.48498 * 109.46642 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47204 * 299.99988 * 22 20 18 26 26 H 1.08996 * 109.47478 * 269.97499 * 1 2 3 27 27 H 1.09003 * 109.47344 * 29.98285 * 1 2 3 28 28 H 1.09005 * 109.46880 * 149.97394 * 1 2 3 29 29 H 1.09000 * 109.46868 * 270.17427 * 7 6 4 30 30 H 1.09006 * 109.47004 * 30.16954 * 7 6 4 31 31 H 1.08997 * 109.47259 * 150.17218 * 7 6 4 32 32 H 1.08998 * 109.47477 * 149.71549 * 9 8 6 33 33 H 1.09002 * 109.47412 * 29.71807 * 9 8 6 34 34 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 36 36 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 37 37 H 1.08993 * 109.47064 * 59.99803 * 16 14 13 38 38 H 1.09001 * 109.47284 * 180.02562 * 16 14 13 39 39 H 1.09000 * 109.46662 * 299.99756 * 16 14 13 40 40 H 0.97009 * 119.99912 * 24.99842 * 17 14 13 41 41 H 0.97003 * 119.99413 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6142 -0.7153 0.0045 7 6 4.8350 -1.5988 0.0109 8 6 2.3272 -1.1329 -0.0006 9 6 1.8599 -2.5657 -0.0003 10 6 1.7038 -3.0435 -1.4210 11 8 1.9475 -2.2942 -2.3429 12 7 1.2925 -4.3032 -1.6670 13 6 1.1466 -4.7695 -3.0481 14 6 0.6769 -6.2256 -3.0478 15 1 1.4506 -6.8568 -2.6106 16 6 0.4049 -6.6741 -4.4851 17 7 -0.5520 -6.3423 -2.2590 18 6 -0.8850 -7.5392 -1.6832 19 1 -0.2419 -8.3974 -1.8110 20 6 -2.0493 -7.6496 -0.9353 21 7 -2.8333 -6.6038 -0.7800 22 14 -2.5039 -9.2827 -0.1505 23 1 -1.4322 -9.6947 0.7912 24 1 -3.7838 -9.1374 0.5883 25 1 -2.6575 -10.3142 -1.2077 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8901 -0.5136 28 1 -0.3633 -0.8898 -0.5143 29 1 5.1338 -1.8131 -1.0152 30 1 5.6489 -1.0902 0.5276 31 1 4.6053 -2.5322 0.5249 32 1 0.9013 -2.6352 0.5138 33 1 2.5935 -3.1870 0.5135 34 1 1.0972 -4.9023 -0.9296 35 1 0.4125 -4.1511 -3.5647 36 1 2.1065 -4.6975 -3.5593 37 1 1.3192 -6.5873 -5.0720 38 1 0.0699 -7.7113 -4.4849 39 1 -0.3688 -6.0429 -4.9223 40 1 -1.1298 -5.5715 -2.1444 41 1 -3.6466 -6.6809 -0.2570 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752917821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:51 Heat of formation + Delta-G solvation = 29.511785 kcal Electronic energy + Delta-G solvation = -21872.596188 eV Core-core repulsion = 18595.812935 eV Total energy + Delta-G solvation = -3276.783253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36713 -39.06859 -36.26459 -33.44030 -33.41221 -32.91604 -31.78474 -29.36445 -28.65742 -27.60559 -26.54604 -24.98685 -23.58861 -20.48920 -20.14725 -20.00321 -19.05912 -17.47640 -17.23178 -16.54464 -15.59378 -15.20719 -14.96804 -14.69919 -14.04476 -13.72453 -13.48822 -13.43296 -13.33221 -12.98864 -12.83475 -12.41639 -12.32459 -12.27670 -12.08188 -12.06259 -11.85342 -11.46736 -11.35329 -10.86822 -10.75531 -10.46354 -10.36411 -10.02497 -9.71724 -9.48707 -9.17402 -8.98516 -8.52279 -8.31450 -7.04436 -5.81911 -3.12019 1.87807 2.71407 2.86099 3.09440 3.39971 3.45440 3.46200 3.83168 4.54200 4.59284 4.69264 4.93013 5.16976 5.25502 5.30718 5.40847 5.47849 5.49423 5.57906 5.60411 5.65416 5.71693 5.78840 5.97140 6.01553 6.04472 6.11447 6.19439 6.20734 6.36321 6.57696 6.71987 6.76760 6.90800 7.08332 7.30005 7.64803 7.73630 8.06743 8.35748 8.72136 9.47572 10.02852 10.38726 11.39925 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.003872 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.389640 B = 7229.362179 C = 7771.333076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.097 3.903 3 N -0.301 5.301 4 N -0.480 5.480 5 H 0.435 0.565 6 C 0.097 3.903 7 C -0.093 4.093 8 C -0.210 4.210 9 C -0.064 4.064 10 C 0.509 3.491 11 O -0.548 6.548 12 N -0.715 5.715 13 C 0.117 3.883 14 C 0.159 3.841 15 H 0.052 0.948 16 C -0.163 4.163 17 N -0.723 5.723 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.410 0.590 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.435 9.515 2.705 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 N -0.125 5.125 4 N -0.188 5.188 5 H 0.278 0.722 6 C -0.031 4.031 7 C -0.152 4.152 8 C -0.221 4.221 9 C -0.105 4.105 10 C 0.295 3.705 11 O -0.426 6.426 12 N -0.368 5.368 13 C -0.008 4.008 14 C 0.049 3.951 15 H 0.070 0.930 16 C -0.223 4.223 17 N -0.366 5.366 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.214 1.214 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.220 0.780 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.595 11.137 2.112 17.701 hybrid contribution -0.247 -1.557 0.684 1.718 sum 13.349 9.580 2.796 16.667 Atomic orbital electron populations 1.20218 0.86696 1.03754 1.02880 1.22174 0.96911 0.90081 0.97787 1.77240 0.86386 1.22293 1.26571 1.46020 1.07255 1.04671 1.60818 0.72193 1.20758 0.96792 0.84940 1.00618 1.20469 0.92763 0.98324 1.03602 1.19061 0.91252 0.94881 1.16904 1.19919 1.03679 0.92128 0.94740 1.20618 0.76898 0.81662 0.91327 1.90659 1.50722 1.54862 1.46340 1.46010 1.67642 1.13386 1.09728 1.21628 1.00274 0.96230 0.82680 1.20503 0.90597 0.92039 0.91925 0.92960 1.22367 0.99816 1.02097 0.98060 1.42459 1.22771 1.11704 1.59632 1.19178 1.04547 0.89161 1.24603 0.91221 1.24730 0.97522 0.97258 1.01063 1.69655 1.14749 1.28591 1.44758 0.86301 0.77498 0.83461 0.79072 1.21264 1.21740 1.21352 0.90391 0.90918 0.90125 0.89967 0.91268 0.89572 0.87968 0.88708 0.75428 0.92051 0.92156 0.94269 0.92390 0.93242 0.78048 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.12 36.00 0.36 -0.60 16 2 C 0.10 1.43 7.22 -82.41 -0.59 0.83 16 3 N -0.30 -4.48 12.70 33.67 0.43 -4.05 16 4 N -0.48 -5.74 7.36 33.48 0.25 -5.50 16 5 H 0.43 3.64 8.96 -182.61 -1.64 2.00 16 6 C 0.10 1.18 7.21 -82.26 -0.59 0.58 16 7 C -0.09 -0.78 10.22 36.01 0.37 -0.41 16 8 C -0.21 -2.91 4.59 -105.06 -0.48 -3.40 16 9 C -0.06 -0.82 5.64 -29.03 -0.16 -0.98 16 10 C 0.51 8.19 7.82 -10.98 -0.09 8.10 16 11 O -0.55 -10.70 16.03 5.55 0.09 -10.62 16 12 N -0.72 -11.53 5.39 -60.30 -0.32 -11.85 16 13 C 0.12 1.97 5.23 -4.04 -0.02 1.95 16 14 C 0.16 2.94 3.05 -67.93 -0.21 2.73 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 C -0.16 -2.81 9.49 37.16 0.35 -2.45 16 17 N -0.72 -16.64 4.56 -53.43 -0.24 -16.88 16 18 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 19 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 22 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.06 7.92 -51.93 -0.41 0.64 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.65 7.14 -51.93 -0.37 0.27 16 32 H 0.10 1.24 7.92 -51.93 -0.41 0.82 16 33 H 0.09 0.97 7.14 -51.93 -0.37 0.60 16 34 H 0.41 6.59 8.14 -40.82 -0.33 6.26 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.39 9.64 7.80 -40.82 -0.32 9.32 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 348.51 15.07 5.25 5.25 Total: -1.00 -32.74 348.51 -7.78 -40.53 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -7.62 Total: 13.11 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.31 Total: -0.42 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: 0.83 Total: -64.19 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.74 -7.78 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752917821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.039 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds