Wall clock time and date at job start Tue Mar 31 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 N 1.46492 * 109.47290 * 295.00228 * 4 2 1 6 6 C 1.35846 * 126.06173 * 124.99801 * 5 4 2 7 7 C 1.35730 * 107.56594 * 180.02562 * 6 5 4 8 8 N 1.40846 * 126.07399 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99852 * 179.97438 * 8 7 6 10 10 O 1.21604 * 120.00147 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99728 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00014 * 0.02562 * 11 9 8 13 13 C 1.46505 * 119.99605 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.46815 * 90.00145 * 13 11 9 15 15 H 1.07995 * 120.00231 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99602 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00313 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99813 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46993 * 90.00123 * 18 16 14 20 20 H 1.48502 * 109.47175 * 210.00259 * 18 16 14 21 21 H 1.48498 * 109.47376 * 330.00048 * 18 16 14 22 22 C 1.40232 * 107.85041 * 0.02562 * 7 6 5 23 23 N 1.30843 * 108.34033 * 359.71696 * 22 7 6 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 32 32 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 33 33 H 1.08007 * 126.21912 * 359.97438 * 6 5 4 34 34 H 0.97004 * 120.00154 * 0.02562 * 8 7 6 35 35 H 1.08995 * 109.47487 * 90.00017 * 12 11 9 36 36 H 1.09000 * 109.46734 * 209.99700 * 12 11 9 37 37 H 1.08996 * 109.47400 * 329.99474 * 12 11 9 38 38 H 1.08994 * 109.46998 * 210.00441 * 13 11 9 39 39 H 1.09000 * 109.47123 * 330.00056 * 13 11 9 40 40 H 0.96999 * 119.99987 * 179.97438 * 17 16 14 41 41 H 1.08000 * 125.82984 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 -2.1328 -1.1906 6 6 0.9539 -2.8103 -2.1384 7 6 0.8038 -4.0868 -1.7024 8 7 0.1374 -5.1233 -2.3847 9 6 0.0617 -6.3518 -1.8355 10 8 0.5683 -6.5653 -0.7508 11 7 -0.5755 -7.3437 -2.4887 12 6 -1.1853 -7.0867 -3.7957 13 6 -0.6583 -8.6790 -1.8915 14 6 -1.9035 -8.7757 -1.0481 15 1 -2.5666 -7.9273 -0.9648 16 6 -2.1961 -9.9473 -0.3827 17 7 -1.3884 -10.9802 -0.4836 18 14 -3.7399 -10.0674 0.6622 19 1 -4.8671 -10.5521 -0.1742 20 1 -3.5085 -11.0174 1.7798 21 1 -4.0712 -8.7282 1.2116 22 6 1.4291 -4.1902 -0.4514 23 7 1.9405 -3.0243 -0.1493 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6055 -0.2618 -2.1370 32 1 3.1264 -0.6443 -1.2951 33 1 0.5842 -2.4063 -3.0693 34 1 -0.2664 -4.9531 -3.2501 35 1 -0.4566 -7.2841 -4.5818 36 1 -2.0485 -7.7389 -3.9284 37 1 -1.5047 -6.0460 -3.8493 38 1 -0.6956 -9.4287 -2.6817 39 1 0.2180 -8.8527 -1.2670 40 1 -1.5941 -11.8043 -0.0152 41 1 1.4838 -5.0813 0.1563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085614502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:36 Heat of formation + Delta-G solvation = 52.360592 kcal Electronic energy + Delta-G solvation = -21725.519723 eV Core-core repulsion = 18449.727268 eV Total energy + Delta-G solvation = -3275.792454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09436 -39.23065 -36.65146 -34.91268 -34.12867 -32.49519 -31.57898 -29.11815 -27.62974 -27.44644 -26.23279 -25.42699 -22.99608 -21.70690 -20.81891 -20.22482 -18.91511 -17.42784 -16.99252 -16.48932 -15.97629 -15.52226 -14.96551 -14.64485 -14.48058 -14.28868 -13.89989 -13.54514 -13.17675 -12.91485 -12.73869 -12.60028 -12.49696 -12.25912 -12.16130 -11.85804 -11.48462 -11.29501 -11.17171 -11.08883 -10.88894 -10.54783 -10.44945 -10.30471 -10.10351 -9.59832 -9.17955 -9.13689 -8.39921 -7.77300 -7.24244 -6.00521 -4.05012 2.00515 2.54067 3.07658 3.32858 3.36936 3.40018 3.46520 4.09273 4.31264 4.45835 4.54368 4.62297 4.71929 4.93601 4.94801 5.14976 5.31283 5.33119 5.33420 5.42856 5.53425 5.55786 5.60904 5.77505 5.83408 5.86070 5.88860 6.02420 6.08982 6.15701 6.61446 6.84135 7.12346 7.31661 7.39481 7.56354 7.71286 7.94575 8.00228 8.27230 8.67031 8.96347 9.32940 9.60581 11.07274 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003447 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.928722 B = 8120.601746 C = 8572.529480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.145 4.145 4 C 0.149 3.851 5 N -0.377 5.377 6 C -0.008 4.008 7 C 0.042 3.958 8 N -0.671 5.671 9 C 0.702 3.298 10 O -0.573 6.573 11 N -0.614 5.614 12 C 0.085 3.915 13 C 0.260 3.740 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.053 3.947 23 N -0.287 5.287 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.169 0.831 34 H 0.399 0.601 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.034 0.966 39 H 0.046 0.954 40 H 0.263 0.737 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 21.904 -7.062 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.203 4.203 4 C 0.027 3.973 5 N -0.163 5.163 6 C -0.155 4.155 7 C -0.064 4.064 8 N -0.321 5.321 9 C 0.404 3.596 10 O -0.450 6.450 11 N -0.349 5.349 12 C -0.060 4.060 13 C 0.141 3.859 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.134 4.134 23 N -0.109 5.109 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.186 0.814 34 H 0.235 0.765 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.326 22.231 -5.389 23.487 hybrid contribution -1.711 -0.534 -0.676 1.915 sum 3.615 21.697 -6.065 22.817 Atomic orbital electron populations 1.21807 0.94592 1.02348 1.01580 1.21444 0.96755 0.96133 0.98677 1.21785 1.01141 0.95109 1.02230 1.21666 1.00559 0.75682 0.99376 1.48215 1.44322 1.08936 1.14825 1.21647 1.04486 0.92015 0.97369 1.17570 1.05014 0.88105 0.95673 1.42251 1.58852 1.08133 1.22875 1.15810 0.80216 0.79573 0.84013 1.90758 1.52375 1.81192 1.20661 1.47447 1.55793 1.12187 1.19505 1.21574 0.98645 1.00430 0.85328 1.19240 0.98266 0.74953 0.93467 1.21466 1.07494 0.98324 1.29153 0.92488 1.24924 0.97079 0.95595 0.96505 1.69930 1.36950 1.03231 1.43359 0.86502 0.82947 0.77960 0.80040 1.20727 1.21097 1.19908 1.24650 0.96493 0.96740 0.95561 1.77317 1.23563 0.99720 1.10347 0.92868 0.92317 0.92508 0.89515 0.92056 0.92364 0.92521 0.89136 0.90236 0.81365 0.76486 0.93735 0.90371 0.93193 0.94831 0.93584 0.92735 0.77502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.08 37.16 0.34 -0.99 16 2 C -0.11 -0.95 3.01 -90.62 -0.27 -1.22 16 3 C -0.14 -0.88 9.19 37.16 0.34 -0.54 16 4 C 0.15 1.29 5.91 -4.05 -0.02 1.27 16 5 N -0.38 -4.82 3.16 -61.03 -0.19 -5.01 16 6 C -0.01 -0.10 11.52 -16.67 -0.19 -0.30 16 7 C 0.04 0.69 6.90 -83.86 -0.58 0.11 16 8 N -0.67 -11.06 5.34 -14.39 -0.08 -11.14 16 9 C 0.70 15.10 8.25 -86.91 -0.72 14.39 16 10 O -0.57 -14.56 13.08 5.27 0.07 -14.49 16 11 N -0.61 -13.08 2.86 -188.74 -0.54 -13.62 16 12 C 0.08 1.30 10.20 59.84 0.61 1.91 16 13 C 0.26 6.81 5.16 -5.19 -0.03 6.78 16 14 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 18 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.05 0.97 10.84 -17.22 -0.19 0.78 16 23 N -0.29 -4.73 12.34 30.70 0.38 -4.36 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.70 7.75 -51.93 -0.40 0.29 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.93 8.06 -51.93 -0.42 0.52 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.17 1.42 8.06 -52.48 -0.42 0.99 16 34 H 0.40 5.09 6.56 -40.82 -0.27 4.82 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 38 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.21 4.28 5.91 -52.49 -0.31 3.97 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -34.44 343.27 -6.90 -41.34 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.30 Total: 2.48 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.13 Total: 8.56 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.31 Total: -60.10 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.07 Total: -14.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.44 -6.90 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085614502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.704 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds