Wall clock time and date at job start Tue Mar 31 2020 02:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 N 1.46492 * 109.47290 * 295.00228 * 4 2 1 6 6 C 1.35846 * 126.06173 * 124.99801 * 5 4 2 7 7 C 1.35730 * 107.56594 * 180.02562 * 6 5 4 8 8 N 1.40846 * 126.07399 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99852 * 179.97438 * 8 7 6 10 10 O 1.21604 * 120.00147 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99728 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00014 * 0.02562 * 11 9 8 13 13 C 1.46505 * 119.99605 * 180.02562 * 11 9 8 14 14 C 1.50703 * 109.46815 * 90.00145 * 13 11 9 15 15 H 1.07995 * 120.00231 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99602 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00313 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99813 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46993 * 90.00123 * 18 16 14 20 20 H 1.48502 * 109.47175 * 210.00259 * 18 16 14 21 21 H 1.48498 * 109.47376 * 330.00048 * 18 16 14 22 22 C 1.40232 * 107.85041 * 0.02562 * 7 6 5 23 23 N 1.30843 * 108.34033 * 359.71696 * 22 7 6 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 32 32 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 33 33 H 1.08007 * 126.21912 * 359.97438 * 6 5 4 34 34 H 0.97004 * 120.00154 * 0.02562 * 8 7 6 35 35 H 1.08995 * 109.47487 * 90.00017 * 12 11 9 36 36 H 1.09000 * 109.46734 * 209.99700 * 12 11 9 37 37 H 1.08996 * 109.47400 * 329.99474 * 12 11 9 38 38 H 1.08994 * 109.46998 * 210.00441 * 13 11 9 39 39 H 1.09000 * 109.47123 * 330.00056 * 13 11 9 40 40 H 0.96999 * 119.99987 * 179.97438 * 17 16 14 41 41 H 1.08000 * 125.82984 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 -2.1328 -1.1906 6 6 0.9539 -2.8103 -2.1384 7 6 0.8038 -4.0868 -1.7024 8 7 0.1374 -5.1233 -2.3847 9 6 0.0617 -6.3518 -1.8355 10 8 0.5683 -6.5653 -0.7508 11 7 -0.5755 -7.3437 -2.4887 12 6 -1.1853 -7.0867 -3.7957 13 6 -0.6583 -8.6790 -1.8915 14 6 -1.9035 -8.7757 -1.0481 15 1 -2.5666 -7.9273 -0.9648 16 6 -2.1961 -9.9473 -0.3827 17 7 -1.3884 -10.9802 -0.4836 18 14 -3.7399 -10.0674 0.6622 19 1 -4.8671 -10.5521 -0.1742 20 1 -3.5085 -11.0174 1.7798 21 1 -4.0712 -8.7282 1.2116 22 6 1.4291 -4.1902 -0.4514 23 7 1.9405 -3.0243 -0.1493 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6055 -0.2618 -2.1370 32 1 3.1264 -0.6443 -1.2951 33 1 0.5842 -2.4063 -3.0693 34 1 -0.2664 -4.9531 -3.2501 35 1 -0.4566 -7.2841 -4.5818 36 1 -2.0485 -7.7389 -3.9284 37 1 -1.5047 -6.0460 -3.8493 38 1 -0.6956 -9.4287 -2.6817 39 1 0.2180 -8.8527 -1.2670 40 1 -1.5941 -11.8043 -0.0152 41 1 1.4838 -5.0813 0.1563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085614502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:35 Heat of formation + Delta-G solvation = 28.887486 kcal Electronic energy + Delta-G solvation = -21726.537593 eV Core-core repulsion = 18449.727268 eV Total energy + Delta-G solvation = -3276.810325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.29453 -40.77774 -37.46505 -36.59941 -35.62955 -34.54416 -32.63272 -30.49110 -29.34273 -28.06281 -27.44651 -26.73123 -24.92391 -22.87203 -21.98324 -21.30314 -20.22923 -18.85581 -18.61654 -18.23947 -17.20027 -16.70922 -16.46547 -16.28778 -15.67578 -15.39773 -15.25326 -14.69688 -14.60328 -14.27850 -13.87580 -13.79162 -13.69895 -13.42896 -13.16194 -13.09390 -12.87983 -12.80303 -12.50217 -12.29721 -12.16866 -11.97527 -11.89647 -11.73387 -11.55446 -11.45749 -10.92322 -10.60934 -10.25368 -9.48960 -8.54023 -8.17589 -6.33476 0.89882 1.37281 1.40915 1.48737 1.52522 1.69895 1.96647 2.39108 2.55288 3.09805 3.21099 3.59429 3.90504 3.94916 4.10856 4.17733 4.35573 4.38934 4.52406 4.61691 4.66615 4.71860 4.79239 4.80836 4.91905 4.95887 5.01866 5.03492 5.21906 5.22943 5.28910 5.36944 5.43095 5.59881 5.83913 5.90914 6.10079 6.12553 6.23920 6.73160 6.76250 7.18846 7.33908 7.74950 8.87468 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026262 B = 0.003447 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.928722 B = 8120.601746 C = 8572.529480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.136 3.864 5 N -0.362 5.362 6 C 0.035 3.965 7 C 0.001 3.999 8 N -0.646 5.646 9 C 0.693 3.307 10 O -0.625 6.625 11 N -0.622 5.622 12 C 0.079 3.921 13 C 0.276 3.724 14 C -0.540 4.540 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.276 1.276 22 C 0.020 3.980 23 N -0.311 5.311 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.420 0.580 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.030 0.970 39 H -0.001 1.001 40 H 0.267 0.733 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.099 25.257 -9.451 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.196 4.196 4 C 0.017 3.983 5 N -0.148 5.148 6 C -0.113 4.113 7 C -0.104 4.104 8 N -0.298 5.298 9 C 0.395 3.605 10 O -0.506 6.506 11 N -0.357 5.357 12 C -0.064 4.064 13 C 0.154 3.846 14 C -0.579 4.579 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.201 1.201 22 C -0.165 4.165 23 N -0.135 5.135 24 H 0.096 0.904 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.110 0.890 33 H 0.242 0.758 34 H 0.260 0.740 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.017 0.983 40 H 0.076 0.924 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.141 25.653 -7.833 27.140 hybrid contribution -1.257 -1.390 0.041 1.875 sum 2.883 24.263 -7.791 25.646 Atomic orbital electron populations 1.21788 0.94910 1.00493 1.02851 1.21390 0.96384 0.97568 0.97417 1.21734 1.01495 0.93107 1.03228 1.22197 1.01826 0.73192 1.01103 1.48708 1.42492 1.09991 1.13580 1.22393 1.00996 0.90016 0.97926 1.17770 1.07322 0.89592 0.95744 1.41755 1.58425 1.06335 1.23324 1.16034 0.79974 0.80925 0.83579 1.90746 1.54350 1.82363 1.23127 1.47294 1.56498 1.10496 1.21417 1.21890 0.98924 1.02686 0.82852 1.18682 0.95530 0.77709 0.92643 1.21725 1.08079 0.98263 1.29863 0.93088 1.25826 1.00402 0.95208 0.97668 1.70047 1.38744 1.03807 1.44253 0.85433 0.79338 0.77721 0.78395 1.18634 1.20696 1.20121 1.24201 0.98865 0.96521 0.96952 1.77253 1.24323 0.99802 1.12111 0.90429 0.95573 0.92518 0.92720 0.92157 0.91786 0.90448 0.84830 0.89042 0.75780 0.74004 0.90987 0.90950 0.89406 0.95230 0.98266 0.92420 0.81348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.08 71.98 0.65 -1.63 16 2 C -0.11 -1.61 3.01 -10.79 -0.03 -1.64 16 3 C -0.14 -1.23 9.19 71.98 0.66 -0.56 16 4 C 0.14 1.84 5.91 86.38 0.51 2.35 16 5 N -0.36 -8.41 3.16 -346.99 -1.10 -9.51 16 6 C 0.04 0.76 11.52 83.49 0.96 1.72 16 7 C 0.00 0.03 6.90 37.59 0.26 0.29 16 8 N -0.65 -20.70 5.34 -317.70 -1.70 -22.40 16 9 C 0.69 30.77 8.25 179.05 1.48 32.24 16 10 O -0.63 -34.19 13.08 -4.04 -0.05 -34.24 16 11 N -0.62 -26.98 2.86 -869.30 -2.48 -29.46 16 12 C 0.08 2.28 10.20 127.77 1.30 3.58 16 13 C 0.28 15.16 5.16 85.63 0.44 15.60 16 14 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 15 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 16 C 0.01 0.46 5.46 84.65 0.46 0.92 16 17 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 18 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 22 C 0.02 0.79 10.84 85.32 0.92 1.72 16 23 N -0.31 -10.49 12.34 -56.78 -0.70 -11.19 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.03 0.58 7.75 -2.39 -0.02 0.56 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 1.17 8.06 -2.39 -0.02 1.15 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.13 0.76 8.07 -2.39 -0.02 0.74 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.23 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.42 9.39 6.56 -92.71 -0.61 8.78 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 37 H 0.09 1.84 6.36 -2.39 -0.02 1.83 16 38 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 39 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.17 7.83 5.91 -2.91 -0.02 7.81 16 Total: -1.00 -82.48 343.27 4.56 -77.92 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.41 Total: 14.60 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 7.86 Total: 23.07 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -5.69 Total: -129.23 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.05 Total: -34.24 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -82.48 4.56 -77.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085614502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.812 kcal (2) G-P(sol) polarization free energy of solvation -82.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds