Wall clock time and date at job start Tue Mar 31 2020 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47386 * 2 1 4 4 C 1.39768 * 125.83998 * 125.23648 * 3 2 1 5 5 C 1.36094 * 107.82632 * 180.14483 * 4 3 2 6 6 N 1.39505 * 126.21406 * 179.90307 * 5 4 3 7 7 C 1.34777 * 120.00075 * 359.69204 * 6 5 4 8 8 O 1.21579 * 119.99978 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99902 * 179.97438 * 7 6 5 10 10 C 1.46504 * 120.00240 * 0.02562 * 9 7 6 11 11 C 1.46499 * 119.99969 * 179.97438 * 9 7 6 12 12 H 1.08998 * 109.47374 * 0.02562 * 11 9 7 13 13 C 1.52996 * 109.47356 * 240.00151 * 11 9 7 14 14 C 1.50702 * 109.46751 * 120.00179 * 11 9 7 15 15 H 1.08000 * 120.00423 * 359.97438 * 14 11 9 16 16 C 1.37882 * 119.99944 * 180.02562 * 14 11 9 17 17 N 1.31510 * 119.99989 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00088 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47126 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47315 * 119.99619 * 18 16 14 21 21 H 1.48500 * 109.47075 * 240.00134 * 18 16 14 22 22 N 1.35246 * 107.57084 * 359.64310 * 5 4 3 23 23 C 1.46500 * 126.04761 * 180.21042 * 22 5 4 24 24 N 1.30836 * 125.84257 * 304.97872 * 3 2 1 25 25 H 1.09003 * 109.47018 * 59.99708 * 1 2 3 26 26 H 1.09002 * 109.47194 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46915 * 299.99889 * 1 2 3 28 28 H 1.09000 * 109.47339 * 240.00286 * 2 1 3 29 29 H 1.09003 * 109.47018 * 120.00292 * 2 1 3 30 30 H 1.08007 * 126.08410 * 0.04655 * 4 3 2 31 31 H 0.97004 * 119.99560 * 179.41375 * 6 5 4 32 32 H 1.09002 * 109.47335 * 89.99458 * 10 9 7 33 33 H 1.08996 * 109.47068 * 210.00026 * 10 9 7 34 34 H 1.09001 * 109.47076 * 330.00053 * 10 9 7 35 35 H 1.08994 * 109.47281 * 60.00380 * 13 11 9 36 36 H 1.09005 * 109.46715 * 180.02562 * 13 11 9 37 37 H 1.08996 * 109.47247 * 299.99620 * 13 11 9 38 38 H 0.96999 * 120.00246 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47773 * 89.99175 * 23 22 5 40 40 H 1.09002 * 109.47488 * 209.99900 * 23 22 5 41 41 H 1.09003 * 109.47170 * 329.99486 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9215 1.9744 0.9254 5 6 3.1215 3.2765 0.5836 6 7 3.9401 4.1876 1.2514 7 6 4.6196 3.8035 2.3502 8 8 4.5188 2.6632 2.7596 9 7 5.4109 4.6836 2.9950 10 6 5.5319 6.0579 2.5020 11 6 6.1490 4.2663 4.1896 12 1 5.9348 3.2189 4.4018 13 6 5.7205 5.1262 5.3803 14 6 7.6273 4.4381 3.9522 15 1 7.9815 4.8195 3.0059 16 6 8.5277 4.1074 4.9426 17 7 8.0964 3.6424 6.0947 18 14 10.3599 4.3210 4.6486 19 1 10.5827 4.8573 3.2818 20 1 10.9147 5.2679 5.6488 21 1 11.0390 3.0070 4.7809 22 7 2.3871 3.5251 -0.5245 23 6 2.3086 4.8022 -1.2381 24 7 1.7145 2.3458 -0.8690 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3688 1.4608 1.7637 31 1 4.0234 5.0964 0.9226 32 1 4.7685 6.6801 2.9691 33 1 6.5195 6.4470 2.7496 34 1 5.3977 6.0690 1.4203 35 1 4.6513 5.0020 5.5521 36 1 6.2701 4.8160 6.2690 37 1 5.9351 6.1735 5.1680 38 1 8.7298 3.4101 6.7917 39 1 3.0831 4.8386 -2.0042 40 1 1.3291 4.8969 -1.7069 41 1 2.4551 5.6214 -0.5342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086296461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:14 Heat of formation + Delta-G solvation = 38.595878 kcal Electronic energy + Delta-G solvation = -22255.431736 eV Core-core repulsion = 18979.042399 eV Total energy + Delta-G solvation = -3276.389337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.58945 -41.00315 -37.43945 -36.41674 -35.20479 -34.56302 -32.62475 -31.42606 -29.62538 -27.68016 -27.55013 -27.28259 -24.49356 -24.02313 -21.96724 -21.16813 -20.41499 -18.99850 -18.51567 -17.88668 -17.26086 -17.03126 -16.45900 -16.15004 -15.75920 -15.05813 -15.00952 -14.85822 -14.51268 -14.42453 -14.17892 -13.69904 -13.54679 -13.36143 -13.14098 -12.99682 -12.90558 -12.72556 -12.65609 -12.31542 -12.22353 -12.18972 -12.09770 -11.82521 -11.48171 -11.20106 -10.97082 -10.51281 -9.78698 -9.53335 -8.98909 -8.13487 -6.29571 0.77043 0.98235 1.42520 1.45228 1.55399 1.73621 1.95187 2.25721 2.43287 2.91999 3.15391 3.51372 3.92606 4.23928 4.26840 4.37997 4.45079 4.48136 4.60849 4.65139 4.66823 4.67371 4.77232 4.91068 4.96608 4.97480 5.05157 5.09751 5.13513 5.22459 5.38923 5.43248 5.52746 5.65222 5.80799 5.91130 6.03856 6.14936 6.20474 6.71232 6.77595 6.98733 7.35691 7.52091 8.91137 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.004036 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.618535 B = 6935.715060 C = 7380.148044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 C 0.085 3.915 4 C -0.316 4.316 5 C 0.328 3.672 6 N -0.647 5.647 7 C 0.699 3.301 8 O -0.608 6.608 9 N -0.604 5.604 10 C 0.075 3.925 11 C 0.279 3.721 12 H 0.013 0.987 13 C -0.132 4.132 14 C -0.538 4.538 15 H 0.063 0.937 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.964 3.036 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.287 1.287 22 N -0.390 5.390 23 C 0.089 3.911 24 N -0.308 5.308 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.144 0.856 31 H 0.421 0.579 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.265 0.735 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.312 4.699 -13.577 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 C -0.080 4.080 4 C -0.348 4.348 5 C 0.105 3.895 6 N -0.301 5.301 7 C 0.400 3.600 8 O -0.486 6.486 9 N -0.339 5.339 10 C -0.067 4.067 11 C 0.177 3.823 12 H 0.031 0.969 13 C -0.191 4.191 14 C -0.577 4.577 15 H 0.081 0.919 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.214 1.214 22 N -0.178 5.178 23 C -0.051 4.051 24 N -0.132 5.132 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.162 0.838 31 H 0.261 0.739 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.916 4.352 -14.153 19.006 hybrid contribution 1.689 0.313 0.900 1.939 sum -10.228 4.665 -13.253 17.378 Atomic orbital electron populations 1.21644 0.93259 1.02867 1.01638 1.20104 0.97131 0.87031 1.04002 1.22558 0.95587 0.97526 0.92377 1.21526 1.11284 0.94071 1.07937 1.17686 0.92249 0.90817 0.88701 1.41827 1.46171 1.14301 1.27772 1.15838 0.79526 0.84776 0.79862 1.90810 1.69144 1.20027 1.68644 1.47449 1.45278 1.11553 1.29586 1.21887 1.04128 0.81458 0.99226 1.18532 0.89494 0.94204 0.80106 0.96868 1.21890 0.97214 0.99262 1.00741 1.21602 0.91235 1.44372 1.00444 0.91897 1.25694 1.03393 0.94460 0.94742 1.70021 1.35834 1.44068 1.05545 0.85414 0.79545 0.77565 0.78501 1.18911 1.20013 1.21377 1.48678 1.36511 1.11679 1.20943 1.22227 1.05959 0.79062 0.97842 1.77221 1.20893 0.91227 1.23814 0.92587 0.89969 0.93700 0.88982 0.89704 0.83810 0.73906 0.91070 0.90202 0.89935 0.96148 0.91218 0.93176 0.92618 0.89275 0.87556 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.87 71.98 0.71 -2.02 16 2 C -0.04 -1.05 6.51 29.85 0.19 -0.85 16 3 C 0.09 2.72 6.48 43.08 0.28 2.99 16 4 C -0.32 -11.98 9.57 22.14 0.21 -11.77 16 5 C 0.33 10.96 7.66 131.31 1.01 11.97 16 6 N -0.65 -20.33 5.28 -322.32 -1.70 -22.03 16 7 C 0.70 29.33 8.25 179.06 1.48 30.81 16 8 O -0.61 -31.24 12.79 -3.96 -0.05 -31.30 16 9 N -0.60 -24.65 2.75 -844.86 -2.33 -26.97 16 10 C 0.08 2.12 9.20 127.77 1.18 3.30 16 11 C 0.28 14.12 2.64 44.24 0.12 14.24 16 12 H 0.01 0.81 6.90 -2.39 -0.02 0.80 16 13 C -0.13 -6.19 8.97 71.98 0.65 -5.54 16 14 C -0.54 -28.38 7.99 25.60 0.20 -28.18 16 15 H 0.06 3.21 7.34 -2.91 -0.02 3.19 16 16 C 0.02 0.91 5.30 84.66 0.45 1.36 16 17 N -0.92 -51.81 11.32 21.45 0.24 -51.57 16 18 Si 0.96 42.20 29.54 68.60 2.03 44.23 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 22 N -0.39 -10.68 4.02 -366.44 -1.47 -12.16 16 23 C 0.09 1.33 11.28 127.77 1.44 2.78 16 24 N -0.31 -9.40 12.53 -47.45 -0.59 -10.00 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 30 H 0.14 6.39 5.82 -2.91 -0.02 6.37 16 31 H 0.42 9.28 5.69 -92.71 -0.53 8.75 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 2.45 7.02 -2.39 -0.02 2.43 16 34 H 0.08 1.67 6.36 -2.39 -0.02 1.65 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 3.64 6.07 -2.38 -0.01 3.63 16 37 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 38 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 1.03 7.50 -2.39 -0.02 1.01 16 Total: -1.00 -73.22 335.21 4.54 -68.68 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.51 Total: 22.04 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 7.91 Total: 19.08 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -5.85 Total: -122.73 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.05 Total: -31.30 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -73.22 4.54 -68.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086296461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.277 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds