Wall clock time and date at job start Tue Mar 31 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.39774 * 125.84087 * 124.71300 * 4 3 2 6 6 C 1.36097 * 107.82351 * 179.86828 * 5 4 3 7 7 N 1.39505 * 126.21063 * 180.14048 * 6 5 4 8 8 C 1.34774 * 120.00250 * 0.30182 * 7 6 5 9 9 O 1.21592 * 119.99881 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99947 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00063 * 359.97438 * 10 8 7 12 12 C 1.46498 * 119.99595 * 179.97438 * 10 8 7 13 13 C 1.50703 * 109.47384 * 90.00011 * 12 10 8 14 14 H 1.07996 * 119.99796 * 359.97438 * 13 12 10 15 15 C 1.37872 * 120.00033 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99964 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00127 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47793 * 89.99785 * 17 15 13 19 19 H 1.48508 * 109.47165 * 209.99820 * 17 15 13 20 20 H 1.48504 * 109.47244 * 329.99218 * 17 15 13 21 21 N 1.35248 * 107.57598 * 0.39309 * 6 5 4 22 22 C 1.46493 * 126.04899 * 179.78280 * 21 6 5 23 23 N 1.30847 * 125.84196 * 305.02765 * 4 3 2 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08001 * 126.08241 * 0.02601 * 5 4 3 32 32 H 0.97004 * 120.00148 * 180.29187 * 7 6 5 33 33 H 1.09004 * 109.46406 * 90.00405 * 11 10 8 34 34 H 1.08999 * 109.46900 * 209.99985 * 11 10 8 35 35 H 1.08994 * 109.47275 * 330.00592 * 11 10 8 36 36 H 1.08999 * 109.46859 * 209.99807 * 12 10 8 37 37 H 1.09001 * 109.47265 * 329.99707 * 12 10 8 38 38 H 0.96997 * 119.99973 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.47524 * 269.98944 * 22 21 6 40 40 H 1.09002 * 109.46873 * 29.98503 * 22 21 6 41 41 H 1.09000 * 109.46824 * 149.98280 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3649 2.0880 -0.9323 6 6 5.6593 1.8508 -0.5851 7 7 6.7909 2.3185 -1.2538 8 6 6.6549 3.0881 -2.3518 9 8 5.5459 3.3744 -2.7599 10 7 7.7481 3.5403 -2.9974 11 6 9.0843 3.1958 -2.5053 12 6 7.6002 4.3764 -4.1912 13 6 7.5494 5.8269 -3.7856 14 1 7.6198 6.0987 -2.7428 15 6 7.4130 6.8068 -4.7458 16 7 7.3681 8.0727 -4.3917 17 14 7.2905 6.3366 -6.5494 18 1 5.8651 6.1313 -6.9120 19 1 7.8620 7.4237 -7.3844 20 1 8.0473 5.0810 -6.7862 21 7 5.6495 1.0747 0.5224 22 6 6.8275 0.5750 1.2355 23 7 4.3135 0.8337 0.8675 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 4.0294 2.6731 -1.7758 32 1 7.6756 2.0899 -0.9283 33 1 9.4157 2.2686 -2.9729 34 1 9.7806 3.9969 -2.7534 35 1 9.0507 3.0654 -1.4237 36 1 8.4490 4.2144 -4.8556 37 1 6.6781 4.1112 -4.7085 38 1 7.2718 8.7621 -5.0672 39 1 7.1197 -0.3905 0.8228 40 1 7.6488 1.2826 1.1209 41 1 6.5908 0.4615 2.2934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091090926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:25 Heat of formation + Delta-G solvation = 57.191667 kcal Electronic energy + Delta-G solvation = -21903.123834 eV Core-core repulsion = 18627.540871 eV Total energy + Delta-G solvation = -3275.582963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32300 -39.48668 -35.68929 -35.19239 -34.27970 -32.68446 -32.48463 -29.21214 -28.32669 -28.04712 -26.05692 -25.37454 -23.00153 -21.84758 -20.97601 -19.87577 -19.09288 -17.76128 -17.01861 -16.80005 -15.80146 -15.62311 -15.02762 -14.82093 -14.55697 -14.07646 -13.77503 -13.51919 -13.36076 -13.28822 -13.02159 -12.58897 -12.46479 -12.40277 -12.18958 -12.08106 -11.56582 -11.42106 -11.28491 -11.03256 -10.84760 -10.57979 -10.49434 -10.25991 -10.16879 -9.59512 -9.37490 -8.64189 -8.61679 -8.03726 -7.61429 -6.11382 -4.11031 2.03578 2.22807 3.05104 3.11378 3.28076 3.33674 3.36239 3.76951 4.18928 4.36987 4.48509 4.84199 4.99310 5.02346 5.08171 5.20440 5.23918 5.29197 5.37013 5.48336 5.63039 5.69012 5.75395 5.81714 5.90041 5.95863 5.98559 6.18835 6.26788 6.28900 6.37758 6.55983 6.79163 7.00888 7.14889 7.28606 7.36102 7.55960 7.94706 8.30695 8.43221 8.90686 8.99800 9.47890 11.01944 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.004134 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.289170 B = 6771.810374 C = 7772.197151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.037 4.037 4 C 0.089 3.911 5 C -0.279 4.279 6 C 0.336 3.664 7 N -0.669 5.669 8 C 0.708 3.292 9 O -0.550 6.550 10 N -0.604 5.604 11 C 0.082 3.918 12 C 0.231 3.769 13 C -0.533 4.533 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.399 5.399 22 C 0.104 3.896 23 N -0.301 5.301 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.176 0.824 32 H 0.400 0.600 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.265 0.735 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -16.804 9.195 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.076 4.076 4 C -0.077 4.077 5 C -0.311 4.311 6 C 0.115 3.885 7 N -0.321 5.321 8 C 0.409 3.591 9 O -0.424 6.424 10 N -0.339 5.339 11 C -0.062 4.062 12 C 0.111 3.889 13 C -0.571 4.571 14 H 0.092 0.908 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.191 1.191 21 N -0.187 5.187 22 C -0.038 4.038 23 N -0.125 5.125 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.193 0.807 32 H 0.237 0.763 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.435 -17.101 9.815 19.867 hybrid contribution 0.848 0.377 -1.297 1.595 sum -1.587 -16.724 8.518 18.836 Atomic orbital electron populations 1.21784 0.95779 1.01478 1.01904 1.21459 0.95404 0.96129 1.02515 1.20049 0.86456 0.97728 1.03372 1.22140 0.96417 0.95874 0.93237 1.21609 0.88880 1.13435 1.07202 1.17700 0.88715 0.94210 0.87864 1.42256 1.06643 1.54030 1.29169 1.15564 0.85600 0.78738 0.79227 1.90845 1.23519 1.61263 1.66799 1.47107 1.03209 1.52881 1.30741 1.21655 0.85727 1.01174 0.97676 1.19667 0.97657 0.90152 0.81447 1.21329 1.51191 0.88575 0.96019 0.90752 1.24848 0.94366 0.94765 0.98969 1.69897 1.49853 0.99614 1.34047 0.86847 0.79176 0.78403 0.85211 1.19764 1.21059 1.19058 1.48323 1.06088 1.42448 1.21883 1.21712 0.84135 0.99598 0.98370 1.77285 0.84684 1.26584 1.23931 0.92894 0.92727 0.92541 0.91582 0.91981 0.89737 0.90386 0.80708 0.76321 0.93328 0.89722 0.93078 0.94795 0.94159 0.92492 0.91127 0.90446 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.26 5.89 -26.73 -0.16 -1.42 16 3 C -0.04 -0.46 5.79 -27.89 -0.16 -0.62 16 4 C 0.09 1.42 6.48 -82.44 -0.53 0.89 16 5 C -0.28 -5.14 9.57 -39.78 -0.38 -5.52 16 6 C 0.34 5.68 7.66 -153.14 -1.17 4.51 16 7 N -0.67 -10.75 5.28 -15.84 -0.08 -10.83 16 8 C 0.71 14.53 8.24 -86.92 -0.72 13.82 16 9 O -0.55 -13.44 13.05 5.28 0.07 -13.37 16 10 N -0.60 -12.01 2.86 -188.74 -0.54 -12.55 16 11 C 0.08 1.15 10.20 59.85 0.61 1.76 16 12 C 0.23 5.48 4.23 -5.19 -0.02 5.45 16 13 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16 14 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 17 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 21 N -0.40 -5.80 4.02 -67.18 -0.27 -6.07 16 22 C 0.10 0.94 11.28 59.84 0.68 1.62 16 23 N -0.30 -4.77 12.53 33.65 0.42 -4.35 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.18 3.62 5.82 -52.49 -0.31 3.31 16 32 H 0.40 4.84 5.70 -40.82 -0.23 4.61 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.05 0.57 6.36 -51.93 -0.33 0.24 16 36 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 37 H 0.04 1.02 6.85 -51.93 -0.36 0.66 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.55 7.50 -51.93 -0.39 0.16 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -35.29 339.78 -7.33 -42.62 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.22 Total: 3.37 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -1.93 Total: 6.18 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.30 Total: -60.36 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.29 -7.33 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091090926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.808 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds