Wall clock time and date at job start Tue Mar 31 2020 01:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46948 * 2 1 4 4 N 1.30839 * 125.82943 * 270.33115 * 3 2 1 5 5 N 1.40068 * 108.36570 * 180.16107 * 4 3 2 6 6 C 1.46506 * 126.06170 * 179.81548 * 5 4 3 7 7 C 1.35842 * 107.88048 * 359.54739 * 5 4 3 8 8 C 1.35725 * 107.56401 * 0.26846 * 7 5 4 9 9 N 1.40844 * 126.07606 * 179.97438 * 8 7 5 10 10 C 1.34783 * 120.00013 * 0.02562 * 9 8 7 11 11 O 1.21596 * 120.00115 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99951 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99930 * 0.02562 * 12 10 9 14 14 C 1.46499 * 120.00174 * 180.02562 * 12 10 9 15 15 H 1.08999 * 109.46485 * 0.02562 * 14 12 10 16 16 C 1.53000 * 109.47262 * 240.00424 * 14 12 10 17 17 C 1.50695 * 109.46970 * 119.99914 * 14 12 10 18 18 H 1.08005 * 120.00254 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99935 * 179.97438 * 17 14 12 20 20 N 1.31522 * 119.99940 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00225 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47142 * 60.00393 * 21 19 17 23 23 H 1.48497 * 109.47437 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47270 * 300.00478 * 21 19 17 25 25 H 1.08994 * 109.47294 * 300.00086 * 1 2 3 26 26 H 1.08997 * 109.46780 * 60.00822 * 1 2 3 27 27 H 1.09002 * 109.47023 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47294 * 239.99914 * 2 1 3 29 29 H 1.09004 * 109.46485 * 119.99374 * 2 1 3 30 30 H 1.09001 * 109.47060 * 269.69087 * 6 5 4 31 31 H 1.09004 * 109.47073 * 29.68575 * 6 5 4 32 32 H 1.09000 * 109.47212 * 149.68658 * 6 5 4 33 33 H 1.08001 * 126.21902 * 180.24265 * 7 5 4 34 34 H 0.97001 * 119.99877 * 180.02562 * 9 8 7 35 35 H 1.08995 * 109.47807 * 89.99948 * 13 12 10 36 36 H 1.09004 * 109.47059 * 209.99458 * 13 12 10 37 37 H 1.09007 * 109.47199 * 329.99571 * 13 12 10 38 38 H 1.09002 * 109.46995 * 299.99851 * 16 14 12 39 39 H 1.09003 * 109.47011 * 59.99960 * 16 14 12 40 40 H 1.08999 * 109.46988 * 179.97438 * 16 14 12 41 41 H 0.96992 * 119.99834 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2818 2.1449 -1.0608 5 7 2.7330 3.4026 -0.6405 6 6 3.1257 4.5133 -1.5114 7 6 2.7362 3.4120 0.7179 8 6 2.3059 2.1948 1.1369 9 7 2.1605 1.7823 2.4757 10 6 2.4605 2.6311 3.4788 11 8 2.8562 3.7531 3.2280 12 7 2.3219 2.2361 4.7600 13 6 1.8456 0.8840 5.0622 14 6 2.6474 3.1588 5.8503 15 1 2.9815 4.1092 5.4343 16 6 3.7608 2.5586 6.7111 17 6 1.4229 3.3853 6.6990 18 1 0.4951 2.8910 6.4513 19 6 1.4873 4.2227 7.7925 20 7 2.6172 4.8243 8.0944 21 14 -0.0303 4.5030 8.8450 22 1 -0.4859 3.2081 9.4114 23 1 0.2996 5.4384 9.9502 24 1 -1.1111 5.0857 8.0100 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.1920 4.4462 -1.7274 31 1 2.5623 4.4612 -2.4431 32 1 2.9149 5.4588 -1.0118 33 1 3.0284 4.2377 1.3497 34 1 1.8445 0.8873 2.6758 35 1 2.6967 0.2071 5.1367 36 1 1.3043 0.8925 6.0082 37 1 1.1815 0.5464 4.2665 38 1 3.4262 1.6083 7.1271 39 1 4.6464 2.3948 6.0971 40 1 4.0033 3.2454 7.5221 41 1 2.6624 5.4136 8.8634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091202028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:20 Heat of formation + Delta-G solvation = 54.219300 kcal Electronic energy + Delta-G solvation = -22387.489041 eV Core-core repulsion = 19111.777186 eV Total energy + Delta-G solvation = -3275.711855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17587 -39.28324 -35.59962 -34.95483 -33.74161 -32.70046 -31.50092 -29.61072 -28.48321 -26.44370 -25.93909 -25.19787 -23.42909 -22.19756 -20.61085 -19.72179 -18.73291 -17.62518 -16.69491 -16.10522 -15.64930 -15.46734 -14.84486 -14.65086 -14.45351 -14.17271 -13.88225 -13.27960 -13.12215 -12.79539 -12.72674 -12.55519 -12.49494 -11.99661 -11.65070 -11.51827 -11.48329 -11.22297 -11.04813 -10.85958 -10.72732 -10.48112 -10.35296 -10.19738 -10.14942 -9.31398 -9.11800 -9.02310 -8.41872 -7.75572 -7.18451 -6.06367 -4.14151 2.05386 2.56363 2.87838 3.28419 3.33526 3.33912 3.43246 4.02839 4.36818 4.48559 4.70117 4.83496 5.02168 5.17453 5.24798 5.26195 5.31550 5.39930 5.49669 5.61947 5.75025 5.79667 5.96422 6.00217 6.13379 6.15212 6.31809 6.42464 6.73614 6.83322 7.03439 7.05349 7.19564 7.38443 7.49782 7.69761 7.80929 7.92986 8.10001 8.23495 8.69997 8.86999 9.27094 9.53029 10.98802 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.004328 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.205188 B = 6467.685829 C = 6924.859139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C 0.055 3.945 4 N -0.291 5.291 5 N -0.382 5.382 6 C 0.112 3.888 7 C 0.037 3.963 8 C 0.026 3.974 9 N -0.666 5.666 10 C 0.700 3.300 11 O -0.589 6.589 12 N -0.604 5.604 13 C 0.084 3.916 14 C 0.274 3.726 15 H 0.065 0.935 16 C -0.146 4.146 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.202 0.798 34 H 0.401 0.599 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.029 0.971 39 H 0.011 0.989 40 H 0.093 0.907 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -8.035 -14.184 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 C -0.114 4.114 4 N -0.114 5.114 5 N -0.169 5.169 6 C -0.030 4.030 7 C -0.109 4.109 8 C -0.079 4.079 9 N -0.316 5.316 10 C 0.402 3.598 11 O -0.468 6.468 12 N -0.339 5.339 13 C -0.060 4.060 14 C 0.173 3.827 15 H 0.083 0.917 16 C -0.205 4.205 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.219 0.781 34 H 0.238 0.762 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.030 0.970 40 H 0.112 0.888 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.526 -6.906 -15.438 16.920 hybrid contribution -0.966 -0.263 1.665 1.943 sum -1.492 -7.169 -13.772 15.598 Atomic orbital electron populations 1.21730 0.94312 1.01784 1.02582 1.19885 0.96078 0.88852 1.03121 1.21986 1.02879 0.97277 0.89217 1.77076 1.20733 0.91311 1.22313 1.48226 1.52756 1.10956 1.04914 1.21745 1.00870 0.86026 0.94348 1.23157 1.03817 1.00378 0.83591 1.17342 1.11949 0.94552 0.84031 1.42253 1.70430 1.16929 1.01968 1.15879 0.79149 0.83952 0.80840 1.90689 1.54089 1.19749 1.82294 1.47516 1.67296 1.14871 1.04203 1.21543 0.98258 0.84020 1.02169 1.18867 0.93835 0.88197 0.81771 0.91739 1.22101 0.96517 1.00571 1.01317 1.21303 0.96135 1.28083 1.10974 0.92323 1.24877 0.96215 0.95351 0.97271 1.69871 1.24989 1.29822 1.27915 0.86554 0.83006 0.78048 0.79751 1.20253 1.21193 1.20300 0.92353 0.92427 0.92025 0.90271 0.90464 0.91118 0.89744 0.89456 0.78114 0.76248 0.93867 0.89683 0.93537 0.95199 0.97005 0.88806 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.90 37.16 0.37 -1.06 16 2 C -0.04 -0.43 6.35 -27.88 -0.18 -0.61 16 3 C 0.05 0.81 6.48 -82.27 -0.53 0.27 16 4 N -0.29 -4.51 12.57 33.74 0.42 -4.09 16 5 N -0.38 -5.67 4.04 -67.81 -0.27 -5.94 16 6 C 0.11 1.10 11.48 59.85 0.69 1.78 16 7 C 0.04 0.63 10.38 -16.68 -0.17 0.46 16 8 C 0.03 0.44 6.90 -83.86 -0.58 -0.13 16 9 N -0.67 -11.28 5.34 -14.39 -0.08 -11.36 16 10 C 0.70 14.87 8.25 -86.91 -0.72 14.15 16 11 O -0.59 -14.35 12.82 5.28 0.07 -14.28 16 12 N -0.60 -12.86 2.75 -181.00 -0.50 -13.36 16 13 C 0.08 1.38 9.20 59.85 0.55 1.93 16 14 C 0.27 6.93 2.64 -69.08 -0.18 6.75 16 15 H 0.06 1.89 6.90 -51.93 -0.36 1.54 16 16 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 17 C -0.53 -14.05 7.99 -34.44 -0.28 -14.33 16 18 H 0.06 1.54 7.33 -52.48 -0.38 1.15 16 19 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 21 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.72 7.69 -51.93 -0.40 0.32 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.20 3.75 5.84 -52.49 -0.31 3.44 16 34 H 0.40 5.55 5.94 -40.82 -0.24 5.31 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 37 H 0.05 0.61 6.36 -51.92 -0.33 0.28 16 38 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -32.45 335.93 -6.52 -38.97 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.04 Total: 5.64 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.79 Total: 7.74 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.20 Total: -58.99 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.07 Total: -14.28 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.45 -6.52 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091202028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.190 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds