Wall clock time and date at job start Tue Mar 31 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99925 * 2 1 4 4 C 1.50697 * 109.47340 * 270.00235 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99810 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99850 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47597 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46799 * 120.00233 * 8 6 4 11 11 H 1.48503 * 109.47078 * 239.99986 * 8 6 4 12 12 C 1.34777 * 119.99880 * 180.02562 * 2 1 3 13 13 O 1.21603 * 119.99960 * 179.97438 * 12 2 1 14 14 N 1.34777 * 119.99726 * 0.26799 * 12 2 1 15 15 C 1.40851 * 119.99560 * 179.72622 * 14 12 2 16 16 C 1.40231 * 126.07812 * 0.02737 * 15 14 12 17 17 N 1.30839 * 108.34599 * 180.02562 * 16 15 14 18 18 N 1.40074 * 108.35804 * 359.97438 * 17 16 15 19 19 C 1.46504 * 126.05788 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47234 * 255.02790 * 19 18 17 21 21 C 1.53006 * 109.46903 * 15.02541 * 19 18 17 22 22 C 1.52996 * 109.47402 * 135.02587 * 19 18 17 23 23 C 1.35732 * 126.07242 * 179.72105 * 15 14 12 24 24 H 1.08998 * 109.46518 * 269.99759 * 1 2 3 25 25 H 1.08994 * 109.46858 * 29.99458 * 1 2 3 26 26 H 1.09001 * 109.47111 * 149.99563 * 1 2 3 27 27 H 1.08994 * 109.47013 * 30.00340 * 3 2 1 28 28 H 1.09005 * 109.46881 * 150.00475 * 3 2 1 29 29 H 0.96999 * 119.99771 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00483 * 359.73178 * 14 12 2 31 31 H 1.07998 * 125.82763 * 359.97438 * 16 15 14 32 32 H 1.09008 * 109.47268 * 59.99888 * 20 19 18 33 33 H 1.09000 * 109.47401 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.47371 * 300.00072 * 20 19 18 35 35 H 1.08998 * 109.46760 * 60.00205 * 21 19 18 36 36 H 1.09000 * 109.46767 * 180.02562 * 21 19 18 37 37 H 1.08995 * 109.47166 * 300.00098 * 21 19 18 38 38 H 1.08994 * 109.47052 * 59.99969 * 22 19 18 39 39 H 1.09000 * 109.47234 * 179.97438 * 22 19 18 40 40 H 1.09001 * 109.46859 * 300.00153 * 22 19 18 41 41 H 1.07995 * 126.21923 * 359.95648 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8776 -1.6727 7 7 3.5551 3.6171 -0.6730 8 14 3.4388 3.4165 -3.4338 9 1 2.8607 2.4167 -4.3673 10 1 2.8017 4.7374 -3.6674 11 1 4.9015 3.5242 -3.6669 12 6 2.1389 -1.1672 -0.0005 13 8 3.3549 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0065 15 6 2.1692 -3.5541 -0.0129 16 6 3.5637 -3.7026 -0.0132 17 7 3.8417 -4.9811 -0.0206 18 7 2.6364 -5.6947 -0.0246 19 6 2.4977 -7.1531 -0.0325 20 6 2.0787 -7.6181 -1.4286 21 6 3.8364 -7.7947 0.3382 22 6 1.4334 -7.5698 0.9846 23 6 1.6188 -4.7948 -0.0139 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1383 0.5138 29 1 4.0319 4.4430 -0.8503 30 1 0.4950 -2.3344 -0.0065 31 1 4.2850 -2.8988 -0.0090 32 1 2.8370 -7.3213 -2.1533 33 1 1.9759 -8.7032 -1.4346 34 1 1.1251 -7.1610 -1.6928 35 1 4.1348 -7.4634 1.3328 36 1 3.7333 -8.8798 0.3319 37 1 4.5946 -7.4978 -0.3863 38 1 0.4798 -7.1128 0.7205 39 1 1.3300 -8.6548 0.9784 40 1 1.7320 -7.2385 1.9792 41 1 0.5636 -5.0248 -0.0093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093274867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:44 Heat of formation + Delta-G solvation = 57.995432 kcal Electronic energy + Delta-G solvation = -21973.729610 eV Core-core repulsion = 18698.181501 eV Total energy + Delta-G solvation = -3275.548109 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.17187 -39.27587 -36.87340 -34.86048 -34.04058 -32.45500 -30.36554 -28.80696 -27.74544 -27.68313 -27.24006 -25.66354 -23.06160 -22.48654 -20.60318 -20.05595 -18.56630 -17.45640 -16.82712 -16.48597 -15.75171 -15.34509 -14.73801 -14.65420 -14.46388 -14.16324 -13.80280 -13.62397 -13.04942 -12.82545 -12.67126 -12.47203 -12.38918 -12.33932 -12.16485 -12.04102 -11.84836 -11.46143 -11.38287 -11.16986 -10.86457 -10.56081 -10.43535 -10.30819 -10.10271 -9.57577 -9.16814 -9.10955 -8.39849 -7.76309 -7.22826 -6.00316 -4.04666 2.03512 2.48109 3.10178 3.32911 3.36855 3.40966 3.46747 4.10570 4.27701 4.46190 4.50753 4.59844 4.64490 4.87657 5.14391 5.15419 5.28918 5.33716 5.35365 5.44255 5.51663 5.54189 5.54581 5.68066 5.80653 5.87963 5.90392 5.90991 6.09936 6.16326 6.63861 6.85178 7.18106 7.34374 7.40295 7.57182 7.72625 7.96589 8.02501 8.27718 8.68118 8.97042 9.34046 9.61009 11.07499 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.003539 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.794672 B = 7910.157472 C = 8227.779485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.614 5.614 3 C 0.260 3.740 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.702 3.298 13 O -0.573 6.573 14 N -0.671 5.671 15 C 0.042 3.958 16 C 0.051 3.949 17 N -0.287 5.287 18 N -0.370 5.370 19 C 0.189 3.811 20 C -0.159 4.159 21 C -0.143 4.143 22 C -0.158 4.158 23 C -0.007 4.007 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.262 0.738 30 H 0.399 0.601 31 H 0.208 0.792 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 -21.826 2.642 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.349 5.349 3 C 0.141 3.859 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.404 3.596 13 O -0.450 6.450 14 N -0.321 5.321 15 C -0.064 4.064 16 C -0.136 4.136 17 N -0.108 5.108 18 N -0.157 5.157 19 C 0.106 3.894 20 C -0.217 4.217 21 C -0.201 4.201 22 C -0.216 4.216 23 C -0.153 4.153 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.235 0.765 31 H 0.225 0.775 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.896 -22.534 2.680 23.717 hybrid contribution -1.235 1.124 -1.038 1.966 sum -8.131 -21.410 1.642 22.961 Atomic orbital electron populations 1.21575 0.81787 1.02317 1.00286 1.47443 1.05620 1.06288 1.75594 1.19238 0.92408 0.76856 0.97433 1.21511 1.36267 1.06145 0.92466 0.92429 1.24928 0.95399 0.96425 0.97380 1.69941 1.38519 1.14380 1.30611 0.86448 0.78099 0.78205 0.84685 1.19863 1.21042 1.20865 1.15807 0.85410 0.79864 0.78526 1.90757 1.11531 1.85359 1.57355 1.42250 1.08825 1.02596 1.78440 1.17573 0.92018 0.84831 1.11965 1.24641 0.95302 0.93877 0.99789 1.77312 1.05046 1.04677 1.23814 1.48481 1.03315 1.04934 1.58992 1.20550 0.97561 0.75014 0.96322 1.22266 1.02361 1.01683 0.95440 1.21900 0.95246 0.99700 1.03259 1.22228 0.98125 1.02278 0.99015 1.21518 0.94664 0.88177 1.10973 0.93747 0.90374 0.93203 0.94840 0.93595 0.92799 0.76525 0.77540 0.91585 0.90754 0.91907 0.91621 0.91259 0.90941 0.91722 0.90443 0.91523 0.81603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.21 59.85 0.61 1.92 16 2 N -0.61 -13.16 2.86 -188.74 -0.54 -13.70 16 3 C 0.26 6.83 5.16 -5.20 -0.03 6.80 16 4 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 8 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 12 C 0.70 15.22 8.25 -86.92 -0.72 14.50 16 13 O -0.57 -14.65 13.08 5.27 0.07 -14.58 16 14 N -0.67 -11.21 5.34 -14.39 -0.08 -11.29 16 15 C 0.04 0.70 6.90 -83.86 -0.58 0.12 16 16 C 0.05 0.95 10.84 -17.23 -0.19 0.77 16 17 N -0.29 -4.80 11.65 30.70 0.36 -4.44 16 18 N -0.37 -4.89 3.45 -48.32 -0.17 -5.05 16 19 C 0.19 1.76 1.24 -131.82 -0.16 1.60 16 20 C -0.16 -1.26 8.74 37.16 0.32 -0.93 16 21 C -0.14 -1.29 8.09 37.16 0.30 -0.99 16 22 C -0.16 -1.10 8.29 37.16 0.31 -0.79 16 23 C -0.01 -0.08 10.67 -16.67 -0.18 -0.26 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 26 H 0.05 0.62 6.35 -51.93 -0.33 0.29 16 27 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 28 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.40 5.18 6.55 -40.82 -0.27 4.91 16 31 H 0.21 4.31 5.91 -52.49 -0.31 4.00 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 38 H 0.06 0.40 7.38 -51.93 -0.38 0.02 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.17 1.52 7.56 -52.49 -0.40 1.12 16 LS Contribution 340.38 15.07 5.13 5.13 Total: -1.00 -34.61 340.38 -6.50 -41.10 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.26 Total: 2.69 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -0.73 Total: 9.05 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.31 Total: -60.49 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.07 Total: -14.58 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.61 -6.50 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093274867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.100 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds