Wall clock time and date at job start Tue Mar 31 2020 02:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99925 * 2 1 4 4 C 1.50697 * 109.47340 * 270.00235 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99810 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99850 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47597 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46799 * 120.00233 * 8 6 4 11 11 H 1.48503 * 109.47078 * 239.99986 * 8 6 4 12 12 C 1.34777 * 119.99880 * 180.02562 * 2 1 3 13 13 O 1.21603 * 119.99960 * 179.97438 * 12 2 1 14 14 N 1.34777 * 119.99726 * 0.26799 * 12 2 1 15 15 C 1.40851 * 119.99560 * 179.72622 * 14 12 2 16 16 C 1.40231 * 126.07812 * 0.02737 * 15 14 12 17 17 N 1.30839 * 108.34599 * 180.02562 * 16 15 14 18 18 N 1.40074 * 108.35804 * 359.97438 * 17 16 15 19 19 C 1.46504 * 126.05788 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47234 * 255.02790 * 19 18 17 21 21 C 1.53006 * 109.46903 * 15.02541 * 19 18 17 22 22 C 1.52996 * 109.47402 * 135.02587 * 19 18 17 23 23 C 1.35732 * 126.07242 * 179.72105 * 15 14 12 24 24 H 1.08998 * 109.46518 * 269.99759 * 1 2 3 25 25 H 1.08994 * 109.46858 * 29.99458 * 1 2 3 26 26 H 1.09001 * 109.47111 * 149.99563 * 1 2 3 27 27 H 1.08994 * 109.47013 * 30.00340 * 3 2 1 28 28 H 1.09005 * 109.46881 * 150.00475 * 3 2 1 29 29 H 0.96999 * 119.99771 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00483 * 359.73178 * 14 12 2 31 31 H 1.07998 * 125.82763 * 359.97438 * 16 15 14 32 32 H 1.09008 * 109.47268 * 59.99888 * 20 19 18 33 33 H 1.09000 * 109.47401 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.47371 * 300.00072 * 20 19 18 35 35 H 1.08998 * 109.46760 * 60.00205 * 21 19 18 36 36 H 1.09000 * 109.46767 * 180.02562 * 21 19 18 37 37 H 1.08995 * 109.47166 * 300.00098 * 21 19 18 38 38 H 1.08994 * 109.47052 * 59.99969 * 22 19 18 39 39 H 1.09000 * 109.47234 * 179.97438 * 22 19 18 40 40 H 1.09001 * 109.46859 * 300.00153 * 22 19 18 41 41 H 1.07995 * 126.21923 * 359.95648 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1269 2.8776 -1.6727 7 7 3.5551 3.6171 -0.6730 8 14 3.4388 3.4165 -3.4338 9 1 2.8607 2.4167 -4.3673 10 1 2.8017 4.7374 -3.6674 11 1 4.9015 3.5242 -3.6669 12 6 2.1389 -1.1672 -0.0005 13 8 3.3549 -1.1672 -0.0010 14 7 1.4650 -2.3344 -0.0065 15 6 2.1692 -3.5541 -0.0129 16 6 3.5637 -3.7026 -0.0132 17 7 3.8417 -4.9811 -0.0206 18 7 2.6364 -5.6947 -0.0246 19 6 2.4977 -7.1531 -0.0325 20 6 2.0787 -7.6181 -1.4286 21 6 3.8364 -7.7947 0.3382 22 6 1.4334 -7.5698 0.9846 23 6 1.6188 -4.7948 -0.0139 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0283 0.5139 28 1 3.1500 1.1383 0.5138 29 1 4.0319 4.4430 -0.8503 30 1 0.4950 -2.3344 -0.0065 31 1 4.2850 -2.8988 -0.0090 32 1 2.8370 -7.3213 -2.1533 33 1 1.9759 -8.7032 -1.4346 34 1 1.1251 -7.1610 -1.6928 35 1 4.1348 -7.4634 1.3328 36 1 3.7333 -8.8798 0.3319 37 1 4.5946 -7.4978 -0.3863 38 1 0.4798 -7.1128 0.7205 39 1 1.3300 -8.6548 0.9784 40 1 1.7320 -7.2385 1.9792 41 1 0.5636 -5.0248 -0.0093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093274867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:42 Heat of formation + Delta-G solvation = 34.073595 kcal Electronic energy + Delta-G solvation = -21974.766939 eV Core-core repulsion = 18698.181501 eV Total energy + Delta-G solvation = -3276.585438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.37748 -40.83231 -37.77316 -36.58328 -35.57569 -34.51377 -31.50539 -30.28425 -29.18120 -28.28780 -28.14328 -27.23817 -24.99240 -23.65267 -22.03311 -21.25116 -19.86458 -18.88003 -18.62592 -17.99098 -17.15753 -16.59683 -16.46445 -16.04283 -15.63875 -15.46589 -14.81872 -14.72179 -14.66442 -14.30424 -13.85616 -13.76211 -13.44697 -13.16650 -13.13478 -13.12339 -13.06858 -12.79018 -12.68627 -12.52164 -12.24991 -12.17894 -12.13452 -11.73590 -11.58268 -11.55130 -10.92896 -10.61861 -10.26183 -9.49409 -8.55551 -8.17872 -6.33610 0.89502 1.37163 1.40125 1.43894 1.52020 1.69375 1.93242 2.38922 2.54711 3.09600 3.19909 3.53709 3.83648 3.92488 3.95358 4.15130 4.35165 4.52605 4.55647 4.66833 4.71058 4.73040 4.76607 4.84540 4.88033 4.89510 4.92328 5.03235 5.14377 5.19721 5.27349 5.30566 5.37266 5.59937 5.83712 5.92143 6.09974 6.12354 6.25539 6.74021 6.76550 7.18134 7.33762 7.74309 8.87445 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.003539 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.794672 B = 7910.157472 C = 8227.779485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.276 3.724 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.267 1.267 11 H -0.283 1.283 12 C 0.694 3.306 13 O -0.625 6.625 14 N -0.647 5.647 15 C 0.003 3.997 16 C 0.019 3.981 17 N -0.309 5.309 18 N -0.357 5.357 19 C 0.173 3.827 20 C -0.155 4.155 21 C -0.143 4.143 22 C -0.154 4.154 23 C 0.033 3.967 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.030 0.970 28 H -0.001 1.001 29 H 0.267 0.733 30 H 0.420 0.580 31 H 0.171 0.829 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 -24.546 1.746 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.357 5.357 3 C 0.155 3.845 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.194 1.194 10 H -0.192 1.192 11 H -0.209 1.209 12 C 0.395 3.605 13 O -0.505 6.505 14 N -0.298 5.298 15 C -0.102 4.102 16 C -0.167 4.167 17 N -0.132 5.132 18 N -0.143 5.143 19 C 0.092 3.908 20 C -0.213 4.213 21 C -0.200 4.200 22 C -0.212 4.212 23 C -0.116 4.116 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.048 0.952 28 H 0.017 0.983 29 H 0.076 0.924 30 H 0.259 0.741 31 H 0.188 0.812 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.111 -25.314 1.790 27.317 hybrid contribution -0.269 1.758 -0.708 1.914 sum -10.380 -23.556 1.082 25.765 Atomic orbital electron populations 1.21892 0.77920 1.03934 1.02608 1.47293 1.07931 1.04694 1.75764 1.18681 0.90964 0.79011 0.95886 1.21761 1.36605 1.06353 0.93196 0.93072 1.25828 0.94970 0.96483 1.01837 1.70053 1.39042 1.14865 1.32853 0.85380 0.77802 0.78371 0.79295 1.19366 1.19235 1.20916 1.16026 0.84978 0.81037 0.78443 1.90744 1.14068 1.86305 1.59427 1.41764 1.09514 1.01138 1.77433 1.17755 0.91347 0.85825 1.15258 1.24210 0.96256 0.93978 1.02265 1.77254 1.07048 1.04170 1.24701 1.49075 1.02398 1.06632 1.56242 1.21141 0.98696 0.72451 0.98493 1.22265 1.01876 1.03783 0.93378 1.21924 0.94697 1.01854 1.01564 1.22248 0.97403 1.04322 0.97179 1.22186 0.96515 0.86331 1.06538 0.90983 0.90907 0.89463 0.95222 0.98267 0.92424 0.74058 0.81232 0.93814 0.87597 0.90983 0.93176 0.87828 0.93184 0.90173 0.87508 0.92702 0.76480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.29 10.21 127.77 1.30 3.60 16 2 N -0.62 -27.11 2.86 -869.30 -2.48 -29.59 16 3 C 0.28 15.20 5.16 85.63 0.44 15.64 16 4 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.45 5.46 84.66 0.46 0.91 16 7 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 8 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 C 0.69 31.00 8.25 179.05 1.48 32.48 16 13 O -0.63 -34.30 13.08 -4.04 -0.05 -34.36 16 14 N -0.65 -21.08 5.34 -317.70 -1.70 -22.78 16 15 C 0.00 0.11 6.90 37.59 0.26 0.37 16 16 C 0.02 0.74 10.84 85.33 0.92 1.66 16 17 N -0.31 -10.64 11.65 -56.78 -0.66 -11.30 16 18 N -0.36 -8.80 3.45 -306.78 -1.06 -9.86 16 19 C 0.17 2.70 1.24 3.60 0.00 2.70 16 20 C -0.15 -1.87 8.74 71.98 0.63 -1.24 16 21 C -0.14 -2.32 8.09 71.98 0.58 -1.74 16 22 C -0.15 -1.42 8.29 71.98 0.60 -0.82 16 23 C 0.03 0.76 10.67 83.49 0.89 1.65 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 26 H 0.09 1.86 6.35 -2.39 -0.02 1.85 16 27 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 28 H 0.00 -0.05 7.42 -2.38 -0.02 -0.07 16 29 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.42 9.65 6.55 -92.71 -0.61 9.05 16 31 H 0.17 7.94 5.91 -2.91 -0.02 7.92 16 32 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 1.04 8.04 -2.39 -0.02 1.02 16 38 H 0.08 0.53 7.38 -2.39 -0.02 0.51 16 39 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.22 2.62 7.56 -2.91 -0.02 2.60 16 Total: -1.00 -82.28 340.38 4.59 -77.69 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.42 Total: 15.24 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 7.81 Total: 23.64 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.62 Total: -130.17 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.05 Total: -34.36 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -82.28 4.59 -77.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093274867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.763 kcal (2) G-P(sol) polarization free energy of solvation -82.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds