Wall clock time and date at job start Tue Mar 31 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47170 * 2 1 4 4 N 1.29951 * 126.28532 * 89.97380 * 3 2 1 5 5 O 1.21301 * 110.25020 * 180.02562 * 4 3 2 6 6 C 1.33644 * 109.81104 * 359.97438 * 5 4 3 7 7 C 1.50700 * 126.55398 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47136 * 167.99164 * 7 6 5 9 9 C 1.52998 * 109.47146 * 287.99510 * 7 6 5 10 10 N 1.46903 * 109.46667 * 47.99188 * 7 6 5 11 11 C 1.46907 * 110.99843 * 177.28938 * 10 7 6 12 12 C 1.53236 * 109.33890 * 172.74525 * 11 10 7 13 13 N 1.47082 * 108.52321 * 53.83284 * 12 11 10 14 14 C 1.36931 * 120.88559 * 128.83025 * 13 12 11 15 15 H 1.07998 * 120.00776 * 208.93174 * 14 13 12 16 16 C 1.38817 * 119.99691 * 28.93715 * 14 13 12 17 17 N 1.31623 * 120.00078 * 17.25103 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 197.24891 * 16 14 13 19 19 H 1.48502 * 109.46991 * 60.00089 * 18 16 14 20 20 H 1.48502 * 109.47268 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47318 * 300.00304 * 18 16 14 22 22 C 1.47084 * 118.23260 * 308.81178 * 13 12 11 23 23 C 1.46896 * 111.00268 * 52.98694 * 10 7 6 24 24 N 1.31138 * 106.89701 * 0.02562 * 6 5 4 25 25 H 1.08999 * 109.46747 * 60.00006 * 1 2 3 26 26 H 1.08998 * 109.46880 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47119 * 299.99897 * 1 2 3 28 28 H 1.08992 * 109.47413 * 239.99473 * 2 1 3 29 29 H 1.09006 * 109.46966 * 119.99681 * 2 1 3 30 30 H 1.09001 * 109.47032 * 299.99857 * 9 7 6 31 31 H 1.08997 * 109.47385 * 59.99807 * 9 7 6 32 32 H 1.09001 * 109.47220 * 179.97438 * 9 7 6 33 33 H 1.08995 * 109.49076 * 292.70971 * 11 10 7 34 34 H 1.09004 * 109.48710 * 52.78487 * 11 10 7 35 35 H 1.09002 * 109.63178 * 294.12084 * 12 11 10 36 36 H 1.09004 * 109.62921 * 173.53894 * 12 11 10 37 37 H 0.96995 * 120.00145 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.62992 * 291.47377 * 22 13 12 39 39 H 1.09004 * 109.62472 * 170.89346 * 22 13 12 40 40 H 1.08997 * 109.49305 * 307.21418 * 23 10 7 41 41 H 1.09004 * 109.48945 * 67.26580 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2883 2.1460 1.0475 5 8 2.6766 3.2453 0.7124 6 6 2.7066 3.3280 -0.6211 7 6 3.1284 4.5228 -1.4370 8 1 3.2513 4.2264 -2.4786 9 6 2.0572 5.6109 -1.3393 10 7 4.4024 5.0422 -0.9220 11 6 4.8779 6.1701 -1.7344 12 6 6.1055 6.7962 -1.0641 13 7 7.0991 5.7380 -0.8271 14 6 8.3971 5.8881 -1.2367 15 1 8.9852 5.0204 -1.4967 16 6 8.9571 7.1557 -1.3177 17 7 8.3888 8.1672 -0.6961 18 14 10.5173 7.4260 -2.3086 19 1 10.2758 7.0494 -3.7247 20 1 10.9075 8.8570 -2.2372 21 1 11.6087 6.5864 -1.7525 22 6 6.6616 4.5144 -0.1381 23 6 5.4121 3.9781 -0.8447 24 7 2.2980 2.1711 -1.0841 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 1.8934 -0.5138 0.8901 30 1 1.1119 5.2254 -1.7213 31 1 1.9343 5.9073 -0.2976 32 1 2.3625 6.4752 -1.9290 33 1 5.1482 5.8139 -2.7284 34 1 4.0882 6.9169 -1.8174 35 1 5.8150 7.2452 -0.1143 36 1 6.5307 7.5581 -1.7175 37 1 8.7804 9.0529 -0.7523 38 1 6.4246 4.7440 0.9007 39 1 7.4545 3.7676 -0.1793 40 1 5.0100 3.1352 -0.2827 41 1 5.6747 3.6521 -1.8512 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104088158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:50 Heat of formation + Delta-G solvation = 77.152821 kcal Electronic energy + Delta-G solvation = -22616.531593 eV Core-core repulsion = 19341.814210 eV Total energy + Delta-G solvation = -3274.717383 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.65389 -40.10818 -37.41558 -36.96714 -34.75208 -33.68618 -32.42375 -31.74580 -31.07588 -27.95633 -26.05696 -25.98487 -24.74341 -24.05097 -23.40965 -21.51645 -20.80314 -19.26477 -18.73586 -18.33022 -17.14677 -16.80528 -16.44256 -15.77421 -15.69892 -15.35814 -15.27125 -15.12563 -15.01782 -14.25222 -14.01374 -13.65258 -13.57007 -13.41088 -13.06803 -12.85751 -12.71555 -12.64403 -12.50805 -12.40263 -12.35194 -12.26240 -12.08888 -11.98654 -11.96676 -11.65462 -11.43839 -10.95065 -10.57896 -9.47454 -8.67883 -7.88422 -5.34823 0.04825 1.12941 1.48554 1.50147 1.57431 1.74485 2.35517 2.51393 2.83915 3.08840 3.27481 3.61773 3.72285 3.94998 4.06023 4.14731 4.21131 4.23740 4.24327 4.36300 4.46183 4.53053 4.63060 4.71686 4.74559 4.79889 4.85165 4.90770 4.92623 4.97119 5.01884 5.09951 5.23436 5.24898 5.34928 5.62018 5.69038 5.95382 6.00723 6.37480 7.10099 7.13706 7.81710 8.37741 9.18506 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036371 B = 0.003862 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.658095 B = 7248.112845 C = 7605.058037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.034 4.034 3 C 0.168 3.832 4 N -0.409 5.409 5 O 0.073 5.927 6 C 0.206 3.794 7 C 0.171 3.829 8 H 0.094 0.906 9 C -0.141 4.141 10 N -0.532 5.532 11 C 0.051 3.949 12 C 0.186 3.814 13 N -0.612 5.612 14 C -0.271 4.271 15 H 0.063 0.937 16 C -0.043 4.043 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.278 1.278 22 C 0.149 3.851 23 C 0.061 3.939 24 N -0.498 5.498 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.105 0.895 35 H 0.004 0.996 36 H 0.059 0.941 37 H 0.252 0.748 38 H 0.014 0.986 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 -11.438 -2.649 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.105 4.105 4 N -0.120 5.120 5 O 0.019 5.981 6 C -0.015 4.015 7 C 0.061 3.939 8 H 0.111 0.889 9 C -0.198 4.198 10 N -0.259 5.259 11 C -0.077 4.077 12 C 0.060 3.940 13 N -0.336 5.336 14 C -0.401 4.401 15 H 0.081 0.919 16 C -0.240 4.240 17 N -0.576 5.576 18 Si 0.796 3.204 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.023 3.977 23 C -0.068 4.068 24 N -0.233 5.233 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.051 0.949 34 H 0.123 0.877 35 H 0.022 0.978 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.032 0.968 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.683 -11.682 -1.647 20.433 hybrid contribution 1.388 0.273 -0.877 1.665 sum -15.295 -11.409 -2.524 19.247 Atomic orbital electron populations 1.21703 0.92065 1.04169 1.01883 1.20179 0.97733 0.83542 1.05791 1.26607 0.99271 1.01636 0.82989 1.74650 1.19026 0.93379 1.24961 1.85343 1.60606 1.27012 1.25145 1.28874 0.94261 0.96337 0.81994 1.20359 0.92006 0.87750 0.93807 0.88867 1.21936 0.96332 0.97252 1.04328 1.62032 1.02116 1.08989 1.52777 1.22758 0.98380 0.92663 0.93918 1.20639 0.86529 0.90126 0.96673 1.44367 1.06416 1.16451 1.66330 1.19429 0.89659 0.92800 1.38259 0.91891 1.25812 1.01005 0.96739 1.00406 1.70173 1.42960 1.00522 1.43929 0.85346 0.79626 0.76396 0.79053 1.20258 1.21803 1.20403 1.21003 0.93773 0.89129 0.93770 1.22370 0.92933 0.92593 0.98952 1.71916 1.19531 1.01864 1.29975 0.92644 0.88492 0.93205 0.87397 0.88014 0.89893 0.91307 0.88737 0.94895 0.87741 0.97815 0.92259 0.93874 0.96778 0.92457 0.92383 0.94874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.90 71.98 0.71 -1.21 16 2 C -0.03 -0.58 6.56 29.85 0.20 -0.38 16 3 C 0.17 4.41 7.47 138.46 1.03 5.45 16 4 N -0.41 -12.44 12.16 -60.31 -0.73 -13.18 16 5 O 0.07 2.31 11.09 74.82 0.83 3.14 16 6 C 0.21 5.87 5.45 88.38 0.48 6.35 16 7 C 0.17 4.43 2.62 44.17 0.12 4.54 16 8 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 9 C -0.14 -2.81 9.03 71.98 0.65 -2.16 16 10 N -0.53 -17.50 4.49 -874.40 -3.93 -21.43 16 11 C 0.05 1.77 5.44 86.38 0.47 2.24 16 12 C 0.19 8.74 5.40 86.35 0.47 9.21 16 13 N -0.61 -31.06 3.02 -698.11 -2.11 -33.17 16 14 C -0.27 -15.00 9.60 84.04 0.81 -14.19 16 15 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 16 C -0.04 -2.40 4.91 84.86 0.42 -1.99 16 17 N -0.93 -54.40 11.35 21.65 0.25 -54.16 16 18 Si 0.97 44.37 29.59 68.60 2.03 46.40 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C 0.15 6.52 6.69 86.35 0.58 7.10 16 23 C 0.06 2.20 5.36 86.38 0.46 2.66 16 24 N -0.50 -13.99 11.55 -303.17 -3.50 -17.49 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.66 6.31 -2.39 -0.02 1.64 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 2.94 6.04 -2.38 -0.01 2.92 16 35 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.06 3.09 6.32 -2.38 -0.02 3.07 16 37 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 2.44 7.95 -2.38 -0.02 2.42 16 40 H 0.06 2.02 6.46 -2.39 -0.02 2.00 16 41 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -65.94 330.00 0.24 -65.71 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.01 Total: 6.55 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.39 Total: 17.62 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -10.03 Total: -139.43 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.83 Total: 3.14 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -65.94 0.24 -65.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104088158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.859 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds