Wall clock time and date at job start Tue Mar 31 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29948 * 126.28607 * 2 1 4 4 O 1.21307 * 110.24862 * 179.97438 * 3 2 1 5 5 C 1.33641 * 109.80755 * 359.97438 * 4 3 2 6 6 C 1.50707 * 126.54636 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46880 * 195.02247 * 6 5 4 8 8 C 1.53001 * 109.47079 * 75.02592 * 6 5 4 9 9 N 1.46896 * 109.47077 * 315.02346 * 6 5 4 10 10 C 1.46961 * 110.99735 * 179.97438 * 9 6 5 11 11 C 1.53059 * 109.36302 * 183.18721 * 10 9 6 12 12 N 1.46952 * 109.36370 * 301.60193 * 11 10 9 13 13 C 1.46906 * 110.99889 * 183.18679 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00017 * 13 12 11 15 15 H 1.08005 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46970 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47088 * 119.99589 * 18 16 14 21 21 H 1.48494 * 109.47293 * 239.99660 * 18 16 14 22 22 C 1.46961 * 110.88410 * 59.32054 * 12 11 10 23 23 C 1.46955 * 111.00246 * 303.79973 * 9 6 5 24 24 N 1.31128 * 106.90390 * 0.22493 * 5 4 3 25 25 H 1.09002 * 109.47030 * 89.97647 * 1 2 3 26 26 H 1.09001 * 109.47504 * 209.97710 * 1 2 3 27 27 H 1.09000 * 109.47135 * 329.97869 * 1 2 3 28 28 H 1.09000 * 109.47184 * 179.97438 * 8 6 5 29 29 H 1.09000 * 109.46983 * 299.99592 * 8 6 5 30 30 H 1.09002 * 109.47195 * 59.99859 * 8 6 5 31 31 H 1.09003 * 109.48904 * 63.22353 * 10 9 6 32 32 H 1.08989 * 109.49349 * 303.15552 * 10 9 6 33 33 H 1.08999 * 109.48651 * 181.63251 * 11 10 9 34 34 H 1.08996 * 109.48556 * 61.57139 * 11 10 9 35 35 H 1.08993 * 109.47164 * 289.99960 * 13 12 11 36 36 H 1.08996 * 109.46920 * 49.99994 * 13 12 11 37 37 H 0.97001 * 119.99343 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.48904 * 60.64354 * 22 12 11 39 39 H 1.09002 * 109.49205 * 180.70887 * 22 12 11 40 40 H 1.09008 * 109.48713 * 296.78155 * 23 9 6 41 41 H 1.09002 * 109.48661 * 56.82117 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5298 -0.6212 0.0015 6 6 4.7969 -1.4370 0.0018 7 1 4.5650 -2.4684 -0.2638 8 6 5.4278 -1.3987 1.3952 9 7 5.7388 -0.8791 -0.9777 10 6 6.9892 -1.6508 -1.0047 11 6 7.9710 -0.9923 -1.9768 12 7 7.3649 -0.9302 -3.3141 13 6 8.3068 -0.3722 -4.2937 14 6 7.7501 -0.5490 -5.6829 15 1 6.7926 -1.0283 -5.8241 16 6 8.4637 -0.0998 -6.7738 17 7 9.6299 0.4834 -6.6018 18 14 7.7734 -0.3182 -8.4958 19 1 6.4554 -0.9979 -8.4182 20 1 7.6081 1.0119 -9.1352 21 1 8.7083 -1.1426 -9.3029 22 6 6.1144 -0.1585 -3.2871 23 6 5.1325 -0.8164 -2.3149 24 7 2.3030 -1.0841 -0.0034 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 6.3440 -1.9892 1.3955 29 1 5.6597 -0.3673 1.6607 30 1 4.7289 -1.8128 2.1220 31 1 6.7810 -2.6693 -1.3323 32 1 7.4252 -1.6717 -0.0060 33 1 8.8885 -1.5793 -2.0203 34 1 8.2004 0.0167 -1.6343 35 1 8.4531 0.6891 -4.0932 36 1 9.2618 -0.8917 -4.2161 37 1 10.1317 0.7998 -7.3693 38 1 6.3227 0.8600 -2.9595 39 1 5.6784 -0.1376 -4.2859 40 1 4.9028 -1.8254 -2.6577 41 1 4.2149 -0.2296 -2.2710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105903325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:43 Heat of formation + Delta-G solvation = 83.366133 kcal Electronic energy + Delta-G solvation = -22403.591076 eV Core-core repulsion = 19129.143123 eV Total energy + Delta-G solvation = -3274.447953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.64981 -39.20094 -36.30476 -35.91028 -33.29741 -32.35214 -31.06751 -30.36255 -29.20804 -27.46229 -25.54933 -24.24842 -23.35847 -22.78283 -21.61318 -20.58516 -19.27972 -18.21251 -17.41002 -16.35263 -16.13412 -15.88062 -14.75267 -14.60907 -14.32451 -14.14757 -13.99868 -13.78127 -13.55857 -13.31128 -13.08532 -12.60543 -12.43902 -12.38006 -12.05122 -11.82405 -11.68874 -11.43009 -11.20415 -11.12924 -10.91579 -10.79550 -10.68729 -10.45635 -10.32643 -9.95570 -9.77196 -9.18260 -8.47035 -8.39054 -7.27001 -6.03710 -4.05104 1.05853 2.08855 2.71665 3.30214 3.30678 3.37998 3.42590 3.79599 4.04915 4.41564 4.61033 4.75444 4.89199 4.98073 5.12657 5.13817 5.20869 5.31479 5.33056 5.41885 5.44812 5.53542 5.60277 5.72315 5.74759 5.77961 5.85532 5.88813 5.95963 6.12868 6.37207 6.51753 6.63922 6.92005 6.99084 7.29233 7.34503 7.78518 8.06213 8.10178 8.17196 8.52771 9.02554 9.59358 11.07186 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.004042 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.498965 B = 6925.653607 C = 7823.931156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.162 3.838 3 N -0.388 5.388 4 O 0.095 5.905 5 C 0.202 3.798 6 C 0.172 3.828 7 H 0.088 0.912 8 C -0.147 4.147 9 N -0.532 5.532 10 C 0.060 3.940 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.508 4.508 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.070 3.930 23 C 0.057 3.943 24 N -0.487 5.487 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.034 0.966 35 H -0.007 1.007 36 H 0.031 0.969 37 H 0.261 0.739 38 H 0.032 0.968 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 -3.686 16.431 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 N -0.096 5.096 4 O 0.037 5.963 5 C -0.019 4.019 6 C 0.061 3.939 7 H 0.105 0.895 8 C -0.205 4.205 9 N -0.259 5.259 10 C -0.067 4.067 11 C -0.073 4.073 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.546 4.546 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.059 4.059 23 C -0.070 4.070 24 N -0.222 5.222 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.011 0.989 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.710 -3.089 16.314 20.910 hybrid contribution -0.155 -0.031 -1.085 1.096 sum -12.865 -3.119 15.229 20.178 Atomic orbital electron populations 1.20111 0.83040 1.04441 1.04303 1.25881 1.00542 0.83623 1.01025 1.74669 0.89651 1.24064 1.21231 1.85366 1.21713 1.24518 1.64750 1.28594 0.96253 0.82269 0.94748 1.20136 0.84017 0.93706 0.96036 0.89483 1.21945 1.01449 1.04223 0.92896 1.62289 1.04437 1.52409 1.06771 1.22291 0.89124 0.95472 0.99795 1.22075 0.96218 0.99196 0.89815 1.62306 1.05818 1.53336 1.04934 1.19707 0.90918 0.92938 0.89572 1.21189 1.05287 1.37763 0.90387 0.91906 1.24985 0.94941 0.95304 0.99349 1.69971 1.13053 1.40135 1.30585 0.86460 0.79103 0.77715 0.84257 1.19705 1.21100 1.20997 1.21951 0.90974 0.94526 0.98415 1.22295 0.97075 1.00179 0.87483 1.71886 0.99570 1.29589 1.21135 0.89351 0.89164 0.89605 0.90025 0.90675 0.91516 0.93609 0.90130 0.90593 0.94802 0.98946 0.95098 0.92968 0.94979 0.89380 0.93627 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.16 2.07 8.22 -156.37 -1.28 0.79 16 3 N -0.39 -5.65 12.16 30.90 0.38 -5.28 16 4 O 0.10 1.40 11.12 18.10 0.20 1.60 16 5 C 0.20 2.68 5.65 -13.05 -0.07 2.61 16 6 C 0.17 1.97 2.62 -68.86 -0.18 1.79 16 7 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 8 C -0.15 -1.28 8.95 37.16 0.33 -0.95 16 9 N -0.53 -7.38 4.57 -227.87 -1.04 -8.42 16 10 C 0.06 0.81 5.32 -3.76 -0.02 0.79 16 11 C 0.06 0.96 5.61 -3.77 -0.02 0.94 16 12 N -0.54 -11.38 4.70 -235.91 -1.11 -12.49 16 13 C 0.19 4.99 4.72 -4.97 -0.02 4.96 16 14 C -0.51 -14.15 8.47 -34.44 -0.29 -14.44 16 15 H 0.06 1.74 7.13 -52.48 -0.37 1.36 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 18 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.07 1.38 5.43 -3.77 -0.02 1.35 16 23 C 0.06 0.92 5.34 -3.77 -0.02 0.90 16 24 N -0.49 -6.61 11.55 -9.86 -0.11 -6.72 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.60 6.34 -51.93 -0.33 0.27 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.84 6.14 -51.94 -0.32 0.52 16 33 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 36 H 0.03 0.84 8.03 -51.93 -0.42 0.43 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.87 6.79 -51.93 -0.35 1.51 16 40 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.06 0.97 6.72 -51.93 -0.35 0.62 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -31.41 331.60 -8.64 -40.05 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -6.34 Total: -4.56 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -1.15 Total: -58.76 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.41 -8.64 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105903325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.417 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds