Wall clock time and date at job start Tue Mar 31 2020 01:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29948 * 126.28607 * 2 1 4 4 O 1.21307 * 110.24862 * 179.97438 * 3 2 1 5 5 C 1.33641 * 109.80755 * 359.97438 * 4 3 2 6 6 C 1.50707 * 126.54636 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46880 * 195.02247 * 6 5 4 8 8 C 1.53001 * 109.47079 * 75.02592 * 6 5 4 9 9 N 1.46896 * 109.47077 * 315.02346 * 6 5 4 10 10 C 1.46961 * 110.99735 * 179.97438 * 9 6 5 11 11 C 1.53059 * 109.36302 * 183.18721 * 10 9 6 12 12 N 1.46952 * 109.36370 * 301.60193 * 11 10 9 13 13 C 1.46906 * 110.99889 * 183.18679 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00017 * 13 12 11 15 15 H 1.08005 * 120.00268 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99915 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00290 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46970 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47088 * 119.99589 * 18 16 14 21 21 H 1.48494 * 109.47293 * 239.99660 * 18 16 14 22 22 C 1.46961 * 110.88410 * 59.32054 * 12 11 10 23 23 C 1.46955 * 111.00246 * 303.79973 * 9 6 5 24 24 N 1.31128 * 106.90390 * 0.22493 * 5 4 3 25 25 H 1.09002 * 109.47030 * 89.97647 * 1 2 3 26 26 H 1.09001 * 109.47504 * 209.97710 * 1 2 3 27 27 H 1.09000 * 109.47135 * 329.97869 * 1 2 3 28 28 H 1.09000 * 109.47184 * 179.97438 * 8 6 5 29 29 H 1.09000 * 109.46983 * 299.99592 * 8 6 5 30 30 H 1.09002 * 109.47195 * 59.99859 * 8 6 5 31 31 H 1.09003 * 109.48904 * 63.22353 * 10 9 6 32 32 H 1.08989 * 109.49349 * 303.15552 * 10 9 6 33 33 H 1.08999 * 109.48651 * 181.63251 * 11 10 9 34 34 H 1.08996 * 109.48556 * 61.57139 * 11 10 9 35 35 H 1.08993 * 109.47164 * 289.99960 * 13 12 11 36 36 H 1.08996 * 109.46920 * 49.99994 * 13 12 11 37 37 H 0.97001 * 119.99343 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.48904 * 60.64354 * 22 12 11 39 39 H 1.09002 * 109.49205 * 180.70887 * 22 12 11 40 40 H 1.09008 * 109.48713 * 296.78155 * 23 9 6 41 41 H 1.09002 * 109.48661 * 56.82117 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5298 -0.6212 0.0015 6 6 4.7969 -1.4370 0.0018 7 1 4.5650 -2.4684 -0.2638 8 6 5.4278 -1.3987 1.3952 9 7 5.7388 -0.8791 -0.9777 10 6 6.9892 -1.6508 -1.0047 11 6 7.9710 -0.9923 -1.9768 12 7 7.3649 -0.9302 -3.3141 13 6 8.3068 -0.3722 -4.2937 14 6 7.7501 -0.5490 -5.6829 15 1 6.7926 -1.0283 -5.8241 16 6 8.4637 -0.0998 -6.7738 17 7 9.6299 0.4834 -6.6018 18 14 7.7734 -0.3182 -8.4958 19 1 6.4554 -0.9979 -8.4182 20 1 7.6081 1.0119 -9.1352 21 1 8.7083 -1.1426 -9.3029 22 6 6.1144 -0.1585 -3.2871 23 6 5.1325 -0.8164 -2.3149 24 7 2.3030 -1.0841 -0.0034 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 6.3440 -1.9892 1.3955 29 1 5.6597 -0.3673 1.6607 30 1 4.7289 -1.8128 2.1220 31 1 6.7810 -2.6693 -1.3323 32 1 7.4252 -1.6717 -0.0060 33 1 8.8885 -1.5793 -2.0203 34 1 8.2004 0.0167 -1.6343 35 1 8.4531 0.6891 -4.0932 36 1 9.2618 -0.8917 -4.2161 37 1 10.1317 0.7998 -7.3693 38 1 6.3227 0.8600 -2.9595 39 1 5.6784 -0.1376 -4.2859 40 1 4.9028 -1.8254 -2.6577 41 1 4.2149 -0.2296 -2.2710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105903325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:42 Heat of formation + Delta-G solvation = 58.947954 kcal Electronic energy + Delta-G solvation = -22404.649927 eV Core-core repulsion = 19129.143123 eV Total energy + Delta-G solvation = -3275.506805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.65516 -40.47876 -37.59045 -37.03095 -34.95535 -33.86194 -32.29694 -31.60222 -30.03064 -29.19476 -26.93985 -25.56900 -24.41338 -24.12155 -23.32762 -21.65795 -20.65738 -19.24471 -18.49914 -18.42905 -17.37710 -16.90118 -16.52895 -15.89919 -15.79843 -15.45953 -15.27439 -14.93873 -14.65461 -14.48241 -14.02118 -13.95593 -13.65379 -13.41472 -13.24657 -13.11076 -13.01132 -12.66320 -12.60281 -12.49079 -12.33292 -12.28809 -12.18555 -12.07575 -11.88198 -11.55156 -11.19742 -10.92980 -10.62796 -9.53606 -9.04841 -8.21533 -6.31464 0.04982 1.12285 1.40051 1.40456 1.53859 1.75341 2.32555 2.39404 2.85653 3.09568 3.11281 3.26665 3.72329 3.84536 3.94610 4.13087 4.14971 4.30195 4.36593 4.44690 4.47930 4.55886 4.60199 4.62605 4.71692 4.75724 4.85555 4.91155 4.95626 5.00188 5.03623 5.07254 5.20408 5.26432 5.28475 5.62747 5.80048 5.85831 6.04615 6.29525 6.61951 6.84417 7.09947 7.38328 8.89800 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.004042 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.498965 B = 6925.653607 C = 7823.931156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.163 3.837 3 N -0.414 5.414 4 O 0.073 5.927 5 C 0.202 3.798 6 C 0.174 3.826 7 H 0.101 0.899 8 C -0.142 4.142 9 N -0.540 5.540 10 C 0.070 3.930 11 C 0.051 3.949 12 N -0.543 5.543 13 C 0.209 3.791 14 C -0.524 4.524 15 H 0.061 0.939 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.276 1.276 22 C 0.074 3.926 23 C 0.075 3.925 24 N -0.499 5.499 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.024 0.976 35 H -0.040 1.040 36 H 0.010 0.990 37 H 0.265 0.735 38 H 0.015 0.985 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 -5.155 17.420 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.126 5.126 4 O 0.019 5.981 5 C -0.019 4.019 6 C 0.064 3.936 7 H 0.118 0.882 8 C -0.200 4.200 9 N -0.267 5.267 10 C -0.056 4.056 11 C -0.077 4.077 12 N -0.268 5.268 13 C 0.082 3.918 14 C -0.562 4.562 15 H 0.079 0.921 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.202 1.202 22 C -0.055 4.055 23 C -0.054 4.054 24 N -0.235 5.235 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.042 0.958 35 H -0.023 1.023 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.113 -4.571 17.333 22.814 hybrid contribution 0.273 0.433 -1.331 1.426 sum -13.840 -4.138 16.001 21.557 Atomic orbital electron populations 1.20358 0.80163 1.05959 1.05462 1.26691 1.02196 0.82973 0.99147 1.74670 0.89832 1.25071 1.22988 1.85333 1.22052 1.25224 1.65506 1.29016 0.96923 0.81999 0.93934 1.20347 0.82964 0.93568 0.96692 0.88194 1.21971 1.02469 1.04441 0.91086 1.62208 1.05171 1.53506 1.05824 1.22275 0.87953 0.94859 1.00560 1.22231 0.97714 0.99325 0.88470 1.62231 1.05492 1.52649 1.06397 1.19350 0.91058 0.90760 0.90583 1.21485 1.05294 1.37777 0.91632 0.92085 1.25893 0.95167 0.94779 1.03724 1.70090 1.14356 1.40956 1.32001 0.85356 0.78668 0.77874 0.78852 1.18868 1.20535 1.20176 1.21859 0.91086 0.94088 0.98440 1.21988 0.95726 0.99590 0.88064 1.71917 0.99796 1.29967 1.21772 0.88209 0.87477 0.88255 0.87961 0.91263 0.90061 0.92863 0.86181 0.90076 0.95774 1.02270 0.97236 0.92661 0.96631 0.91643 0.93486 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.51 71.24 0.75 -0.13 16 2 C 0.16 3.94 8.22 138.46 1.14 5.08 16 3 N -0.41 -11.81 12.16 -60.30 -0.73 -12.55 16 4 O 0.07 2.11 11.12 74.84 0.83 2.95 16 5 C 0.20 5.06 5.65 88.38 0.50 5.56 16 6 C 0.17 3.55 2.62 44.17 0.12 3.67 16 7 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 8 C -0.14 -1.99 8.95 71.98 0.64 -1.34 16 9 N -0.54 -14.05 4.57 -874.85 -4.00 -18.05 16 10 C 0.07 1.70 5.32 86.31 0.46 2.16 16 11 C 0.05 1.73 5.61 86.31 0.48 2.21 16 12 N -0.54 -23.41 4.70 -900.28 -4.23 -27.64 16 13 C 0.21 11.22 4.72 85.56 0.40 11.63 16 14 C -0.52 -29.94 8.47 25.60 0.22 -29.73 16 15 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16 16 C 0.00 0.14 5.46 84.65 0.46 0.60 16 17 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 18 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.07 2.99 5.43 86.31 0.47 3.46 16 23 C 0.07 2.36 5.34 86.31 0.46 2.82 16 24 N -0.50 -12.72 11.55 -303.18 -3.50 -16.22 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.03 6.34 -2.39 -0.02 1.01 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.12 2.02 6.14 -2.39 -0.01 2.00 16 33 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 36 H 0.01 0.55 8.03 -2.39 -0.02 0.53 16 37 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 2.89 6.79 -2.39 -0.02 2.87 16 40 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.06 1.89 6.72 -2.39 -0.02 1.88 16 Total: -1.00 -69.79 331.60 -2.21 -72.00 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.02 Total: 3.09 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 6.10 Total: 5.98 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -12.18 Total: -130.68 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.83 Total: 2.95 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -69.79 -2.21 -72.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105903325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.946 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds