Wall clock time and date at job start Tue Mar 31 2020 01:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50704 * 109.47169 * 180.02562 * 3 2 1 5 5 C 1.39765 * 125.84186 * 125.23525 * 4 3 2 6 6 C 1.36108 * 107.82729 * 180.14165 * 5 4 3 7 7 N 1.39496 * 126.21465 * 179.90824 * 6 5 4 8 8 C 1.34774 * 120.00144 * 359.68355 * 7 6 5 9 9 O 1.21585 * 119.99999 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00059 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00039 * 180.27853 * 10 8 7 12 12 H 1.09006 * 109.47221 * 34.72200 * 11 10 8 13 13 C 1.53002 * 109.46971 * 274.72160 * 11 10 8 14 14 C 1.50697 * 109.47223 * 154.72180 * 11 10 8 15 15 H 1.07996 * 120.00026 * 35.00138 * 14 11 10 16 16 C 1.37881 * 120.00159 * 215.00286 * 14 11 10 17 17 N 1.31509 * 120.00431 * 184.91399 * 16 14 11 18 18 Si 1.86807 * 119.99675 * 4.91287 * 16 14 11 19 19 H 1.48501 * 109.46916 * 84.83547 * 18 16 14 20 20 H 1.48493 * 109.46813 * 204.83152 * 18 16 14 21 21 H 1.48497 * 109.47137 * 324.83609 * 18 16 14 22 22 N 1.35248 * 107.56601 * 359.64126 * 6 5 4 23 23 C 1.46504 * 126.04016 * 180.18923 * 22 6 5 24 24 N 1.30849 * 125.84037 * 304.97482 * 4 3 2 25 25 H 1.08992 * 109.47004 * 60.00258 * 1 2 3 26 26 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46985 * 299.99758 * 1 2 3 28 28 H 1.08999 * 109.47467 * 240.00038 * 2 1 3 29 29 H 1.08999 * 109.47389 * 119.99769 * 2 1 3 30 30 H 1.08998 * 109.47092 * 60.00308 * 3 2 1 31 31 H 1.08998 * 109.47737 * 299.99692 * 3 2 1 32 32 H 1.08000 * 126.08855 * 0.02562 * 5 4 3 33 33 H 0.97000 * 119.99761 * 179.69011 * 7 6 5 34 34 H 0.97000 * 119.99836 * 359.97438 * 10 8 7 35 35 H 1.08999 * 109.47139 * 175.02974 * 13 11 10 36 36 H 1.08994 * 109.47047 * 295.03748 * 13 11 10 37 37 H 1.09001 * 109.47160 * 55.03824 * 13 11 10 38 38 H 0.97000 * 120.00638 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46779 * 90.00742 * 23 22 6 40 40 H 1.09005 * 109.46728 * 209.99523 * 23 22 6 41 41 H 1.08992 * 109.47288 * 330.00207 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3650 2.0964 -0.9263 6 6 5.6595 1.8509 -0.5849 7 7 6.7910 2.3192 -1.2530 8 6 6.6550 3.0879 -2.3517 9 8 5.5461 3.3736 -2.7602 10 7 7.7483 3.5398 -2.9975 11 6 7.6005 4.3805 -4.1882 12 1 6.7250 5.0200 -4.0750 13 6 7.4269 3.4918 -5.4215 14 6 8.8296 5.2363 -4.3546 15 1 9.7996 4.8469 -4.0827 16 6 8.7160 6.5164 -4.8541 17 7 9.7961 7.2285 -5.0903 18 14 7.0276 7.2393 -5.1953 19 1 6.4791 7.8268 -3.9466 20 1 7.1422 8.2970 -6.2312 21 1 6.1193 6.1687 -5.6792 22 7 5.6494 1.0755 0.5232 23 6 6.8276 0.5755 1.2360 24 7 4.3135 0.8344 0.8681 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 4.0296 2.6892 -1.7645 33 1 7.6757 2.0914 -0.9269 34 1 8.6330 3.3122 -2.6713 35 1 7.2289 4.1151 -6.2935 36 1 8.3377 2.9160 -5.5855 37 1 6.5902 2.8111 -5.2640 38 1 9.7161 8.1289 -5.4421 39 1 7.1205 1.2934 2.0021 40 1 6.5903 -0.3795 1.7049 41 1 7.6483 0.4405 0.5316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121097048.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:33 Heat of formation + Delta-G solvation = 16.970597 kcal Electronic energy + Delta-G solvation = -21755.010431 eV Core-core repulsion = 18477.683351 eV Total energy + Delta-G solvation = -3277.327080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.56876 -40.89485 -37.16120 -36.53156 -35.49539 -34.40264 -33.64064 -31.74847 -29.64019 -29.13784 -27.32293 -26.33890 -24.02827 -22.75800 -22.00830 -21.40331 -20.99622 -19.72888 -18.65840 -18.16053 -17.16792 -16.90327 -16.50813 -16.04553 -15.82139 -15.57321 -15.14445 -14.83330 -14.54337 -14.49551 -14.31268 -14.18864 -13.60882 -13.42213 -13.26541 -13.03476 -12.96081 -12.78630 -12.48552 -12.34401 -12.15137 -11.94036 -11.85444 -11.66320 -11.41250 -11.23511 -11.05318 -10.84084 -10.00887 -9.74027 -9.04462 -8.39146 -6.45759 0.77251 0.97021 1.32334 1.37103 1.46971 1.73156 1.95420 2.25311 2.28049 2.94527 3.27666 3.51860 3.88711 4.16670 4.23602 4.37671 4.40949 4.51200 4.52761 4.59339 4.63343 4.74646 4.82588 4.85374 4.87251 4.99098 5.05245 5.06829 5.08987 5.25044 5.36195 5.37800 5.46721 5.49770 5.67897 5.76150 5.88704 6.06083 6.24562 6.60403 6.73237 7.06886 7.21589 7.49965 8.75409 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.003859 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.972079 B = 7254.650525 C = 8039.685494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.037 4.037 4 C 0.085 3.915 5 C -0.313 4.313 6 C 0.328 3.672 7 N -0.648 5.648 8 C 0.702 3.298 9 O -0.604 6.604 10 N -0.706 5.706 11 C 0.253 3.747 12 H 0.033 0.967 13 C -0.142 4.142 14 C -0.525 4.525 15 H 0.061 0.939 16 C 0.036 3.964 17 N -0.928 5.928 18 Si 0.924 3.076 19 H -0.276 1.276 20 H -0.278 1.278 21 H -0.253 1.253 22 N -0.390 5.390 23 C 0.089 3.911 24 N -0.310 5.310 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.423 0.577 34 H 0.406 0.594 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.271 0.729 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -14.769 12.071 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.076 4.076 4 C -0.080 4.080 5 C -0.345 4.345 6 C 0.106 3.894 7 N -0.300 5.300 8 C 0.402 3.598 9 O -0.483 6.483 10 N -0.359 5.359 11 C 0.149 3.851 12 H 0.051 0.949 13 C -0.201 4.201 14 C -0.564 4.564 15 H 0.079 0.921 16 C -0.165 4.165 17 N -0.566 5.566 18 Si 0.749 3.251 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.177 1.177 22 N -0.178 5.178 23 C -0.051 4.051 24 N -0.133 5.133 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.167 0.833 33 H 0.261 0.739 34 H 0.242 0.758 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.364 -15.062 12.665 22.241 hybrid contribution 0.749 1.081 -0.739 1.509 sum -9.615 -13.980 11.927 20.740 Atomic orbital electron populations 1.21754 0.94001 1.02340 1.02442 1.21392 0.96870 0.94842 1.01772 1.20176 0.84597 0.98930 1.03946 1.22515 0.97827 0.95222 0.92481 1.21532 0.90368 1.14665 1.07922 1.17691 0.88434 0.94666 0.88657 1.41705 1.07620 1.52810 1.27905 1.15927 0.85391 0.78913 0.79587 1.90816 1.25352 1.63230 1.68875 1.45554 1.06836 1.53353 1.30173 1.18833 0.96060 0.88696 0.81481 0.94943 1.22135 1.00199 0.99393 0.98406 1.21160 0.93341 0.98408 1.43459 0.92130 1.25573 0.99482 0.97030 0.94445 1.69960 1.30121 1.11480 1.45059 0.86093 0.81325 0.79065 0.78615 1.20145 1.20365 1.17722 1.48683 1.06854 1.41249 1.21021 1.22212 0.82922 1.02041 0.97902 1.77250 0.85471 1.26737 1.23891 0.92267 0.91939 0.91898 0.92992 0.92047 0.89231 0.89587 0.83260 0.73883 0.75815 0.93134 0.92218 0.94389 0.91958 0.89421 0.87730 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.45 16 2 C -0.11 -2.15 5.89 30.59 0.18 -1.97 16 3 C -0.04 -0.84 5.79 29.85 0.17 -0.67 16 4 C 0.09 2.53 6.48 43.08 0.28 2.81 16 5 C -0.31 -10.84 9.57 22.14 0.21 -10.63 16 6 C 0.33 10.09 7.66 131.31 1.01 11.09 16 7 N -0.65 -18.26 5.42 -322.31 -1.75 -20.01 16 8 C 0.70 26.00 8.50 179.05 1.52 27.52 16 9 O -0.60 -27.04 13.13 -3.98 -0.05 -27.09 16 10 N -0.71 -26.16 5.07 -461.40 -2.34 -28.50 16 11 C 0.25 11.41 2.22 44.25 0.10 11.51 16 12 H 0.03 1.62 4.72 -2.38 -0.01 1.61 16 13 C -0.14 -5.86 9.47 71.98 0.68 -5.18 16 14 C -0.53 -27.17 9.05 25.60 0.23 -26.94 16 15 H 0.06 3.30 8.06 -2.91 -0.02 3.28 16 16 C 0.04 1.95 5.47 84.66 0.46 2.41 16 17 N -0.93 -53.87 13.96 21.45 0.30 -53.57 16 18 Si 0.92 43.48 26.99 68.60 1.85 45.33 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.25 -11.59 6.82 99.48 0.68 -10.91 16 22 N -0.39 -10.07 4.02 -366.43 -1.47 -11.54 16 23 C 0.09 1.28 11.28 127.77 1.44 2.72 16 24 N -0.31 -9.00 12.53 -47.44 -0.59 -9.59 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 32 H 0.15 5.95 5.82 -2.91 -0.02 5.93 16 33 H 0.42 8.16 7.98 -92.71 -0.74 7.42 16 34 H 0.41 12.57 8.61 -92.71 -0.80 11.77 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.10 0.97 7.50 -2.39 -0.02 0.96 16 Total: -1.00 -69.97 342.13 2.43 -67.54 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.52 Total: 26.21 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 7.00 Total: 11.22 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -5.86 Total: -123.21 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.09 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.85 Total: 45.33 kcal Total: -69.97 2.43 -67.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121097048.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.511 kcal (2) G-P(sol) polarization free energy of solvation -69.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds