Wall clock time and date at job start Tue Mar 31 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.46769 * 180.02562 * 9 8 7 11 11 C 1.46903 * 111.00228 * 66.04241 * 10 9 8 12 12 C 1.46906 * 110.99853 * 189.99913 * 10 9 8 13 13 C 1.50695 * 109.46947 * 170.00153 * 12 10 9 14 14 O 1.21293 * 120.00665 * 359.97438 * 13 12 10 15 15 N 1.34786 * 119.99721 * 180.02562 * 13 12 10 16 16 C 1.37102 * 119.99697 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99723 * 0.02562 * 16 15 13 18 18 C 1.38951 * 119.99523 * 179.97438 * 16 15 13 19 19 N 1.31409 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99579 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46802 * 90.00730 * 20 18 16 22 22 H 1.48505 * 109.47103 * 210.00370 * 20 18 16 23 23 H 1.48496 * 109.47456 * 330.00472 * 20 18 16 24 24 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 25 25 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 26 26 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 27 27 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 28 28 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 30 30 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 31 31 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 32 32 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 33 33 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 34 34 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 35 35 H 1.09006 * 109.46785 * 60.00195 * 11 10 9 36 36 H 1.09005 * 109.47133 * 179.97438 * 11 10 9 37 37 H 1.08990 * 109.47113 * 300.00366 * 11 10 9 38 38 H 1.09006 * 109.46871 * 289.99755 * 12 10 9 39 39 H 1.09000 * 109.47257 * 49.99792 * 12 10 9 40 40 H 0.96996 * 119.99673 * 359.97438 * 15 13 12 41 41 H 0.97005 * 119.99759 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 6 1.0863 -4.3952 -1.4219 10 7 0.8141 -4.8263 -2.7996 11 6 2.0494 -4.8623 -3.5938 12 6 0.1374 -6.1300 -2.8192 13 6 -0.3432 -6.4255 -4.2166 14 8 -0.1422 -5.6284 -5.1084 15 7 -0.9973 -7.5753 -4.4752 16 6 -1.4350 -7.8439 -5.7464 17 1 -1.2552 -7.1344 -6.5405 18 6 -2.1088 -9.0295 -6.0131 19 7 -2.3270 -9.8929 -5.0468 20 14 -2.7058 -9.3951 -7.7450 21 1 -1.6459 -10.1198 -8.4911 22 1 -3.9283 -10.2356 -7.6800 23 1 -3.0176 -8.1207 -8.4405 24 1 -0.3633 0.0031 1.0277 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5112 27 1 4.4097 1.3412 -0.0122 28 1 4.4776 -1.2831 -0.0089 29 1 0.9328 -2.5761 0.6021 30 1 2.6188 -3.1229 0.4394 31 1 2.4683 -2.8547 -2.0212 32 1 0.7822 -2.3078 -1.8583 33 1 1.8623 -5.0274 -0.9903 34 1 0.1765 -4.4799 -0.8278 35 1 2.7521 -5.5619 -3.1410 36 1 1.8193 -5.1851 -4.6092 37 1 2.4935 -3.8673 -3.6202 38 1 0.8345 -6.9061 -2.5030 39 1 -0.7142 -6.1077 -2.1392 40 1 -1.1583 -8.2126 -3.7619 41 1 -2.7977 -10.7204 -5.2330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136310990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:46 Heat of formation + Delta-G solvation = 4.243072 kcal Electronic energy + Delta-G solvation = -21220.034324 eV Core-core repulsion = 17942.155338 eV Total energy + Delta-G solvation = -3277.878987 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.99524 -40.38278 -38.31064 -36.07587 -35.58530 -33.27789 -32.60367 -32.10444 -29.36360 -27.95018 -27.43085 -26.53907 -24.33512 -22.27560 -21.93052 -20.99946 -20.58662 -19.84472 -18.10222 -17.64269 -16.81819 -16.71767 -16.52836 -16.17210 -15.94151 -15.46899 -15.21579 -15.08450 -14.75096 -14.49336 -13.90596 -13.78686 -13.70754 -13.45561 -13.21540 -13.14555 -12.97967 -12.95954 -12.74426 -12.52663 -12.39772 -12.37315 -12.12277 -11.63992 -11.45525 -10.92274 -10.56536 -10.26893 -9.99187 -9.25536 -9.19088 -8.46236 -5.94442 1.12124 1.37718 1.41716 1.54114 1.88832 2.07136 2.19471 2.28978 2.79522 3.20968 3.42779 3.64954 3.74604 3.86736 4.02765 4.13593 4.24440 4.33160 4.39103 4.47388 4.49538 4.53913 4.58168 4.60271 4.68636 4.72753 4.74447 4.88669 4.99072 5.03008 5.14615 5.29111 5.41776 5.42350 5.87693 5.89107 6.07271 6.22532 6.32453 6.62132 7.14350 7.18513 7.58220 8.14626 8.71152 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041633 B = 0.002584 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.376818 B =10831.273838 C =10889.104652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.191 3.809 3 N -0.539 5.539 4 C -0.060 4.060 5 C -0.054 4.054 6 N -0.454 5.454 7 C 0.108 3.892 8 C -0.121 4.121 9 C 0.061 3.939 10 N -0.542 5.542 11 C 0.027 3.973 12 C 0.059 3.941 13 C 0.439 3.561 14 O -0.617 6.617 15 N -0.575 5.575 16 C -0.331 4.331 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.990 3.010 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.274 1.274 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.180 0.820 28 H 0.202 0.798 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.032 0.968 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.396 0.604 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 10.224 15.248 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 N -0.260 5.260 4 C -0.207 4.207 5 C -0.187 4.187 6 N -0.136 5.136 7 C -0.014 4.014 8 C -0.160 4.160 9 C -0.067 4.067 10 N -0.266 5.266 11 C -0.121 4.121 12 C -0.072 4.072 13 C 0.227 3.773 14 O -0.503 6.503 15 N -0.213 5.213 16 C -0.461 4.461 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.562 5.562 20 Si 0.814 3.186 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.199 1.199 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.197 0.803 28 H 0.219 0.781 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.230 0.770 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.089 11.561 14.461 20.205 hybrid contribution 0.588 -1.885 -0.459 2.027 sum 8.677 9.677 14.002 19.105 Atomic orbital electron populations 1.20308 0.83409 1.04617 1.04467 1.23814 0.96872 0.81597 1.04911 1.70195 1.03563 1.30093 1.22121 1.22667 0.94727 0.94151 1.09186 1.23176 0.88001 0.96748 1.10766 1.45618 1.06371 1.08055 1.53546 1.22030 1.03671 0.77948 0.97783 1.21816 1.01878 0.96365 0.95916 1.22104 1.01808 0.94747 0.88049 1.61455 1.24814 1.27197 1.13153 1.22404 0.89806 1.01230 0.98611 1.21741 1.00342 0.91391 0.93739 1.20880 0.82504 0.82226 0.91687 1.90471 1.61612 1.49075 1.49155 1.41945 1.50643 1.18207 1.10502 1.19626 1.34699 1.04142 0.87623 0.90502 1.25998 0.96971 0.95024 1.03251 1.69665 1.42180 1.10509 1.33797 0.84963 0.78064 0.78161 0.77375 1.19689 1.19514 1.19913 0.88720 0.89710 0.89460 0.80259 0.78146 0.86881 0.86588 0.92056 0.91951 0.92737 0.88683 0.94970 0.93043 0.90852 0.91296 0.86794 0.76974 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.04 71.24 0.72 -0.37 16 2 C 0.19 4.17 7.90 138.13 1.09 5.26 16 3 N -0.54 -14.42 11.25 -188.13 -2.12 -16.54 16 4 C -0.06 -1.32 11.87 83.52 0.99 -0.33 16 5 C -0.05 -0.94 11.58 83.09 0.96 0.02 16 6 N -0.45 -8.05 2.75 -514.30 -1.41 -9.46 16 7 C 0.11 1.24 5.67 86.38 0.49 1.73 16 8 C -0.12 -2.02 5.46 30.59 0.17 -1.86 16 9 C 0.06 1.09 4.96 86.30 0.43 1.52 16 10 N -0.54 -15.92 4.50 -927.03 -4.17 -20.10 16 11 C 0.03 0.84 8.96 127.69 1.14 1.98 16 12 C 0.06 1.89 5.45 85.55 0.47 2.36 16 13 C 0.44 20.41 7.47 87.65 0.66 21.06 16 14 O -0.62 -33.71 13.91 -3.07 -0.04 -33.75 16 15 N -0.58 -28.99 5.29 -306.98 -1.62 -30.61 16 16 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 17 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 19 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 20 Si 0.99 42.69 29.55 68.60 2.03 44.71 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.15 7.34 -2.39 -0.02 1.14 16 27 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 28 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.11 0.92 7.94 -2.39 -0.02 0.90 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.17 6.55 -2.39 -0.02 1.15 16 32 H 0.06 1.30 7.64 -2.39 -0.02 1.28 16 33 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.09 1.40 7.93 -2.39 -0.02 1.38 16 35 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.05 2.04 5.82 -2.38 -0.01 2.03 16 37 H 0.07 1.98 6.47 -2.39 -0.02 1.97 16 38 H 0.07 1.94 8.12 -2.38 -0.02 1.93 16 39 H 0.11 3.10 7.93 -2.39 -0.02 3.08 16 40 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 41 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -74.34 342.08 1.63 -72.71 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.30 Total: 28.49 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 8.39 Total: 13.33 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -9.04 Total: -125.49 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.04 Total: -33.75 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -74.34 1.63 -72.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136310990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.953 kcal (2) G-P(sol) polarization free energy of solvation -74.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds