Wall clock time and date at job start Tue Mar 31 2020 01:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46863 * 2 1 4 4 C 1.53002 * 109.46909 * 304.42733 * 3 2 1 5 5 C 1.52995 * 109.47186 * 294.81072 * 4 3 2 6 6 C 1.53003 * 109.47316 * 64.42680 * 3 2 1 7 7 N 1.46500 * 109.46721 * 64.99884 * 6 3 2 8 8 C 1.46504 * 120.00079 * 269.99842 * 7 6 3 9 9 C 1.50702 * 109.47041 * 265.68421 * 8 7 6 10 10 H 1.08000 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99910 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99826 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 119.99900 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47254 * 90.00335 * 13 11 9 15 15 H 1.48504 * 109.47090 * 210.00282 * 13 11 9 16 16 H 1.48501 * 109.47462 * 329.99817 * 13 11 9 17 17 C 1.34773 * 119.99981 * 90.00049 * 7 6 3 18 18 O 1.21597 * 120.00128 * 354.70267 * 17 7 6 19 19 C 1.47526 * 120.00457 * 174.97149 * 17 7 6 20 20 C 1.36591 * 125.77370 * 174.00055 * 19 17 7 21 21 N 1.34821 * 106.83714 * 180.02562 * 20 19 17 22 22 H 0.96999 * 126.59160 * 179.97438 * 21 20 19 23 23 N 1.40210 * 106.81217 * 359.97438 * 21 20 19 24 24 N 1.28763 * 108.36598 * 359.73005 * 23 21 20 25 25 H 1.09001 * 109.47396 * 63.90924 * 1 2 3 26 26 H 1.09005 * 109.46961 * 183.90590 * 1 2 3 27 27 H 1.08998 * 109.47679 * 303.90764 * 1 2 3 28 28 H 1.08993 * 109.47514 * 239.99911 * 2 1 3 29 29 H 1.09005 * 109.46979 * 119.99728 * 2 1 3 30 30 H 1.08998 * 109.47202 * 184.43062 * 3 2 1 31 31 H 1.09003 * 109.47110 * 54.81781 * 4 3 2 32 32 H 1.08999 * 109.46922 * 174.81103 * 4 3 2 33 33 H 1.09007 * 109.47093 * 65.81404 * 5 4 3 34 34 H 1.08998 * 109.47478 * 185.81316 * 5 4 3 35 35 H 1.08994 * 109.47321 * 305.81360 * 5 4 3 36 36 H 1.08996 * 109.46842 * 305.00214 * 6 3 2 37 37 H 1.08995 * 109.46999 * 184.99866 * 6 3 2 38 38 H 1.08993 * 109.46917 * 25.68956 * 8 7 6 39 39 H 1.09002 * 109.46833 * 145.68707 * 8 7 6 40 40 H 0.96998 * 119.99874 * 179.97438 * 12 11 9 41 41 H 1.07996 * 126.58145 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4410 2.1951 -1.1899 5 6 1.9618 1.5860 -2.4931 6 6 1.6228 2.1310 1.3012 7 7 2.2918 1.4834 2.4323 8 6 1.6528 0.3539 3.1122 9 6 0.8788 0.8571 4.3033 10 1 0.8639 1.9128 4.5308 11 6 0.1888 -0.0300 5.1020 12 7 0.2066 -1.3155 4.8246 13 14 -0.7712 0.5938 6.5779 14 1 -2.1603 0.9171 6.1643 15 1 -0.7991 -0.4545 7.6294 16 1 -0.1174 1.8148 7.1136 17 6 3.4948 1.9268 2.8475 18 8 4.0690 2.7996 2.2252 19 6 4.1180 1.3491 4.0534 20 6 5.3747 1.6241 4.5126 21 7 5.5506 0.8924 5.6312 22 1 6.3441 0.8700 6.1887 23 7 4.3662 0.1699 5.8336 24 7 3.5428 0.4678 4.8894 25 1 -0.3634 0.4520 -0.9229 26 1 -0.3633 -1.0253 0.0700 27 1 -0.3634 0.5733 0.8528 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1270 1.4436 -0.0794 31 1 0.3542 2.1156 -1.1603 32 1 1.7299 3.2449 -1.1385 33 1 1.5865 0.5676 -2.5937 34 1 1.6184 2.1847 -3.3368 35 1 3.0515 1.5718 -2.4775 36 1 0.5427 2.0518 1.4240 37 1 1.9082 3.1822 1.2637 38 1 0.9737 -0.1480 2.4231 39 1 2.4167 -0.3486 3.4457 40 1 -0.2786 -1.9397 5.3867 41 1 6.0904 2.2978 4.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171568353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:02 Heat of formation + Delta-G solvation = 55.295889 kcal Electronic energy + Delta-G solvation = -23159.103048 eV Core-core repulsion = 19883.437877 eV Total energy + Delta-G solvation = -3275.665170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55366 -39.05750 -36.98488 -34.52582 -32.68097 -32.24189 -30.79948 -30.33310 -28.44361 -26.58262 -24.39119 -23.40597 -22.84983 -22.58119 -21.65393 -19.45277 -18.64365 -17.41611 -16.47497 -15.80045 -15.52846 -15.09472 -14.99351 -14.63856 -14.25937 -14.07553 -13.72021 -13.25531 -12.88499 -12.58659 -12.33523 -12.12570 -11.72617 -11.59048 -11.43281 -11.29528 -11.13537 -10.87987 -10.75921 -10.71496 -10.25569 -10.19310 -10.07006 -10.01196 -9.96762 -9.67211 -9.47496 -9.19022 -8.77898 -8.23690 -7.56515 -5.89802 -3.89552 1.65424 2.53792 2.91961 3.37798 3.44737 3.48411 3.94870 4.05628 4.55927 4.96542 5.12664 5.20211 5.28618 5.31495 5.44661 5.47678 5.56206 5.65245 5.70119 5.76524 5.99406 6.03692 6.08583 6.17072 6.19222 6.23400 6.34663 6.43685 6.47091 6.61942 6.70371 6.78272 6.89580 7.04263 7.14730 7.55346 7.74169 8.01459 8.36903 8.38988 8.65856 8.99954 9.12210 9.72145 11.18761 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.007593 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.909123 B = 3686.594925 C = 5213.870227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.100 4.100 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.123 3.877 7 N -0.576 5.576 8 C 0.231 3.769 9 C -0.505 4.505 10 H 0.051 0.949 11 C 0.074 3.926 12 N -0.889 5.889 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.596 3.404 18 O -0.577 6.577 19 C -0.094 4.094 20 C 0.078 3.922 21 N -0.481 5.481 22 H 0.439 0.561 23 N -0.085 5.085 24 N -0.120 5.120 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.259 0.741 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 4.026 -6.973 10.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.120 4.120 4 C -0.157 4.157 5 C -0.206 4.206 6 C 0.000 4.000 7 N -0.304 5.304 8 C 0.112 3.888 9 C -0.544 4.544 10 H 0.069 0.931 11 C -0.128 4.128 12 N -0.528 5.528 13 Si 0.715 3.285 14 H -0.210 1.210 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.383 3.617 18 O -0.459 6.459 19 C -0.232 4.232 20 C -0.080 4.080 21 N -0.192 5.192 22 H 0.284 0.716 23 N -0.067 5.067 24 N 0.005 4.995 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.734 3.268 -6.397 9.847 hybrid contribution 0.487 0.936 0.856 1.359 sum 7.221 4.205 -5.541 10.027 Atomic orbital electron populations 1.21870 0.95988 1.01669 1.01491 1.21627 0.96245 0.96134 1.01968 1.21559 1.00418 0.95578 0.94396 1.21554 1.00825 0.99212 0.94111 1.21762 1.00959 1.00827 0.97041 1.21449 0.97612 0.96385 0.84547 1.48110 1.17586 1.33956 1.30700 1.19869 0.94007 0.83094 0.91872 1.21201 1.29093 0.93413 1.10723 0.93093 1.24711 0.96467 0.94645 0.97010 1.69902 1.42501 1.01383 1.39004 0.86700 0.80090 0.78503 0.83233 1.21015 1.21302 1.20307 1.16837 0.81476 0.81485 0.81944 1.90684 1.64009 1.33621 1.57575 1.21632 0.93841 1.05795 1.01965 1.23254 0.98900 0.96933 0.88942 1.48178 1.17241 1.33077 1.20746 0.71620 1.82153 0.87946 1.16453 1.20100 1.75578 1.19254 1.06835 0.97846 0.93353 0.93165 0.91556 0.92973 0.90702 0.91261 0.91493 0.92300 0.92658 0.93383 0.93024 0.90007 0.91237 0.93841 0.92748 0.93079 0.78584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.56 37.16 0.32 -2.04 16 2 C -0.12 -1.95 4.84 -26.73 -0.13 -2.08 16 3 C -0.10 -1.57 2.37 -90.62 -0.21 -1.79 16 4 C -0.12 -1.54 5.09 -26.73 -0.14 -1.68 16 5 C -0.15 -1.70 9.53 37.16 0.35 -1.35 16 6 C 0.12 2.26 4.70 -4.04 -0.02 2.24 16 7 N -0.58 -12.29 2.29 -176.29 -0.40 -12.70 16 8 C 0.23 5.59 3.65 -5.19 -0.02 5.57 16 9 C -0.50 -13.52 7.79 -34.44 -0.27 -13.79 16 10 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 11 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 12 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 13 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.60 12.76 7.62 -12.48 -0.10 12.66 16 18 O -0.58 -12.52 16.50 5.28 0.09 -12.44 16 19 C -0.09 -1.90 6.59 -83.55 -0.55 -2.45 16 20 C 0.08 1.17 11.79 -16.83 -0.20 0.97 16 21 N -0.48 -6.70 7.43 30.66 0.23 -6.47 16 22 H 0.44 3.85 8.96 -182.51 -1.64 2.21 16 23 N -0.08 -1.69 13.89 60.35 0.84 -0.85 16 24 N -0.12 -2.74 7.86 32.85 0.26 -2.48 16 25 H 0.05 0.64 6.47 -51.93 -0.34 0.30 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.14 5.77 -51.93 -0.30 0.84 16 28 H 0.05 0.75 6.93 -51.93 -0.36 0.39 16 29 H 0.07 1.40 5.59 -51.93 -0.29 1.11 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.83 6.15 -51.93 -0.32 0.52 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.62 6.97 -51.92 -0.36 0.26 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.49 6.18 -51.93 -0.32 1.17 16 37 H 0.07 1.27 7.50 -51.93 -0.39 0.88 16 38 H 0.04 1.07 5.10 -51.93 -0.26 0.81 16 39 H 0.05 1.44 5.80 -51.93 -0.30 1.14 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 41 H 0.20 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -32.04 326.40 -6.37 -38.42 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.96 Total: 1.16 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.06 Total: -1.80 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 1.66 Total: -47.06 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.04 -6.37 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171568353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.714 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds