Wall clock time and date at job start Tue Mar 31 2020 01:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46863 * 2 1 4 4 C 1.53002 * 109.46909 * 304.42733 * 3 2 1 5 5 C 1.52995 * 109.47186 * 294.81072 * 4 3 2 6 6 C 1.53003 * 109.47316 * 64.42680 * 3 2 1 7 7 N 1.46500 * 109.46721 * 64.99884 * 6 3 2 8 8 C 1.46504 * 120.00079 * 269.99842 * 7 6 3 9 9 C 1.50702 * 109.47041 * 265.68421 * 8 7 6 10 10 H 1.08000 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99910 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99826 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 119.99900 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47254 * 90.00335 * 13 11 9 15 15 H 1.48504 * 109.47090 * 210.00282 * 13 11 9 16 16 H 1.48501 * 109.47462 * 329.99817 * 13 11 9 17 17 C 1.34773 * 119.99981 * 90.00049 * 7 6 3 18 18 O 1.21597 * 120.00128 * 354.70267 * 17 7 6 19 19 C 1.47526 * 120.00457 * 174.97149 * 17 7 6 20 20 C 1.36591 * 125.77370 * 174.00055 * 19 17 7 21 21 N 1.34821 * 106.83714 * 180.02562 * 20 19 17 22 22 H 0.96999 * 126.59160 * 179.97438 * 21 20 19 23 23 N 1.40210 * 106.81217 * 359.97438 * 21 20 19 24 24 N 1.28763 * 108.36598 * 359.73005 * 23 21 20 25 25 H 1.09001 * 109.47396 * 63.90924 * 1 2 3 26 26 H 1.09005 * 109.46961 * 183.90590 * 1 2 3 27 27 H 1.08998 * 109.47679 * 303.90764 * 1 2 3 28 28 H 1.08993 * 109.47514 * 239.99911 * 2 1 3 29 29 H 1.09005 * 109.46979 * 119.99728 * 2 1 3 30 30 H 1.08998 * 109.47202 * 184.43062 * 3 2 1 31 31 H 1.09003 * 109.47110 * 54.81781 * 4 3 2 32 32 H 1.08999 * 109.46922 * 174.81103 * 4 3 2 33 33 H 1.09007 * 109.47093 * 65.81404 * 5 4 3 34 34 H 1.08998 * 109.47478 * 185.81316 * 5 4 3 35 35 H 1.08994 * 109.47321 * 305.81360 * 5 4 3 36 36 H 1.08996 * 109.46842 * 305.00214 * 6 3 2 37 37 H 1.08995 * 109.46999 * 184.99866 * 6 3 2 38 38 H 1.08993 * 109.46917 * 25.68956 * 8 7 6 39 39 H 1.09002 * 109.46833 * 145.68707 * 8 7 6 40 40 H 0.96998 * 119.99874 * 179.97438 * 12 11 9 41 41 H 1.07996 * 126.58145 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4410 2.1951 -1.1899 5 6 1.9618 1.5860 -2.4931 6 6 1.6228 2.1310 1.3012 7 7 2.2918 1.4834 2.4323 8 6 1.6528 0.3539 3.1122 9 6 0.8788 0.8571 4.3033 10 1 0.8639 1.9128 4.5308 11 6 0.1888 -0.0300 5.1020 12 7 0.2066 -1.3155 4.8246 13 14 -0.7712 0.5938 6.5779 14 1 -2.1603 0.9171 6.1643 15 1 -0.7991 -0.4545 7.6294 16 1 -0.1174 1.8148 7.1136 17 6 3.4948 1.9268 2.8475 18 8 4.0690 2.7996 2.2252 19 6 4.1180 1.3491 4.0534 20 6 5.3747 1.6241 4.5126 21 7 5.5506 0.8924 5.6312 22 1 6.3441 0.8700 6.1887 23 7 4.3662 0.1699 5.8336 24 7 3.5428 0.4678 4.8894 25 1 -0.3634 0.4520 -0.9229 26 1 -0.3633 -1.0253 0.0700 27 1 -0.3634 0.5733 0.8528 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.1270 1.4436 -0.0794 31 1 0.3542 2.1156 -1.1603 32 1 1.7299 3.2449 -1.1385 33 1 1.5865 0.5676 -2.5937 34 1 1.6184 2.1847 -3.3368 35 1 3.0515 1.5718 -2.4775 36 1 0.5427 2.0518 1.4240 37 1 1.9082 3.1822 1.2637 38 1 0.9737 -0.1480 2.4231 39 1 2.4167 -0.3486 3.4457 40 1 -0.2786 -1.9397 5.3867 41 1 6.0904 2.2978 4.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171568353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:00 Heat of formation + Delta-G solvation = 34.165091 kcal Electronic energy + Delta-G solvation = -23160.019348 eV Core-core repulsion = 19883.437877 eV Total energy + Delta-G solvation = -3276.581470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.97809 -40.62397 -38.38099 -36.19371 -34.26223 -34.05398 -31.97022 -31.74852 -30.00216 -28.35767 -25.74590 -25.04715 -24.31383 -24.02365 -23.07884 -20.88415 -19.92983 -18.99762 -18.43428 -17.26917 -17.11557 -16.62134 -16.45028 -16.07299 -15.98520 -15.47550 -15.14945 -14.68847 -14.27261 -14.16368 -13.76544 -13.63950 -13.28750 -13.02808 -12.90932 -12.72590 -12.61889 -12.57181 -12.37410 -12.05596 -11.90597 -11.66743 -11.60456 -11.52104 -11.28673 -11.21591 -11.16973 -10.84354 -10.33404 -10.21017 -9.28990 -8.00103 -6.05000 0.35965 0.95515 1.40332 1.42992 1.50436 1.76514 2.35611 2.45499 2.55784 3.33680 3.54861 3.83687 3.98568 4.01745 4.10100 4.15846 4.29861 4.45009 4.50097 4.62335 4.67181 4.76407 4.85600 4.92835 4.98799 5.03053 5.09606 5.14454 5.20804 5.36963 5.42082 5.45653 5.54492 5.56605 5.71727 5.85795 5.99653 6.14992 6.31493 6.62733 6.96797 7.18555 7.41573 7.60025 9.07194 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.007593 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.909123 B = 3686.594925 C = 5213.870227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.114 4.114 5 C -0.145 4.145 6 C 0.120 3.880 7 N -0.582 5.582 8 C 0.254 3.746 9 C -0.502 4.502 10 H 0.035 0.965 11 C 0.033 3.967 12 N -0.916 5.916 13 Si 0.936 3.064 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.283 1.283 17 C 0.591 3.409 18 O -0.585 6.585 19 C -0.139 4.139 20 C 0.120 3.880 21 N -0.447 5.447 22 H 0.465 0.535 23 N -0.118 5.118 24 N -0.168 5.168 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.259 0.741 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 5.142 -7.742 12.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.109 4.109 4 C -0.152 4.152 5 C -0.203 4.203 6 C -0.002 4.002 7 N -0.310 5.310 8 C 0.133 3.867 9 C -0.541 4.541 10 H 0.053 0.947 11 C -0.166 4.166 12 N -0.556 5.556 13 Si 0.764 3.236 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.208 1.208 17 C 0.379 3.621 18 O -0.467 6.467 19 C -0.278 4.278 20 C -0.040 4.040 21 N -0.161 5.161 22 H 0.315 0.685 23 N -0.099 5.099 24 N -0.042 5.042 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 7.741 4.382 -7.141 11.407 hybrid contribution 0.335 0.652 1.104 1.325 sum 8.076 5.033 -6.036 11.269 Atomic orbital electron populations 1.21808 0.95444 1.01275 1.01854 1.21554 0.96629 0.96135 1.01185 1.21447 0.99617 0.95534 0.94270 1.21529 1.01107 0.99082 0.93485 1.21739 1.00783 1.01177 0.96571 1.21612 0.97261 0.96411 0.84962 1.48083 1.17927 1.33539 1.31434 1.19379 0.92857 0.83497 0.90927 1.21293 1.28927 0.92454 1.11465 0.94702 1.25272 0.97441 0.94807 0.99078 1.69993 1.43522 1.02145 1.39966 0.85912 0.79358 0.77656 0.80716 1.19933 1.21159 1.20842 1.17081 0.81346 0.81350 0.82347 1.90655 1.64087 1.33917 1.58073 1.21834 0.96122 1.07417 1.02429 1.23838 0.97391 0.95238 0.87546 1.48056 1.16705 1.30983 1.20374 0.68516 1.82028 0.89673 1.18096 1.20141 1.75537 1.21206 1.08338 0.99085 0.90579 0.93592 0.93831 0.91017 0.94141 0.92645 0.90729 0.91897 0.92402 0.91510 0.93307 0.90407 0.91296 0.94700 0.94802 0.93165 0.73815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 8.56 71.98 0.62 -3.85 16 2 C -0.12 -3.74 4.84 30.59 0.15 -3.59 16 3 C -0.09 -2.77 2.37 -10.79 -0.03 -2.80 16 4 C -0.11 -2.75 5.09 30.59 0.16 -2.59 16 5 C -0.15 -2.95 9.53 71.98 0.69 -2.26 16 6 C 0.12 4.44 4.70 86.38 0.41 4.85 16 7 N -0.58 -25.49 2.29 -829.93 -1.90 -27.39 16 8 C 0.25 12.78 3.65 85.63 0.31 13.09 16 9 C -0.50 -27.66 7.79 25.60 0.20 -27.46 16 10 H 0.03 1.99 7.81 -2.91 -0.02 1.97 16 11 C 0.03 1.87 5.46 84.65 0.46 2.33 16 12 N -0.92 -53.40 13.29 21.45 0.28 -53.12 16 13 Si 0.94 45.38 29.54 68.60 2.03 47.40 16 14 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 16 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 17 C 0.59 25.42 7.62 86.69 0.66 26.09 16 18 O -0.58 -24.93 16.50 -4.02 -0.07 -25.00 16 19 C -0.14 -5.56 6.59 40.82 0.27 -5.29 16 20 C 0.12 3.27 11.79 83.85 0.99 4.26 16 21 N -0.45 -11.39 7.43 -56.90 -0.42 -11.81 16 22 H 0.46 6.59 8.96 -213.25 -1.91 4.68 16 23 N -0.12 -4.66 13.89 37.02 0.51 -4.15 16 24 N -0.17 -7.75 7.86 -49.99 -0.39 -8.15 16 25 H 0.08 1.86 6.47 -2.39 -0.02 1.85 16 26 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.04 1.51 5.77 -2.39 -0.01 1.50 16 28 H 0.07 1.98 6.93 -2.39 -0.02 1.97 16 29 H 0.04 1.57 5.59 -2.38 -0.01 1.55 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.69 6.15 -2.39 -0.01 1.67 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.14 6.97 -2.38 -0.02 1.13 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 2.91 6.18 -2.39 -0.01 2.89 16 37 H 0.07 2.53 7.50 -2.39 -0.02 2.51 16 38 H 0.04 1.81 5.10 -2.39 -0.01 1.80 16 39 H 0.03 1.88 5.80 -2.39 -0.01 1.87 16 40 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.25 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -71.54 326.40 4.07 -67.47 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -0.85 Total: 11.96 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 4.88 Total: 2.78 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -1.92 Total: -104.61 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.07 Total: -25.00 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.54 4.07 -67.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171568353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.635 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds