Wall clock time and date at job start Tue Mar 31 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 C 1.52997 * 109.46972 * 240.00214 * 2 1 3 5 5 C 1.52997 * 109.47046 * 119.99921 * 2 1 3 6 6 N 1.46493 * 109.47157 * 60.00195 * 5 2 1 7 7 C 1.34785 * 120.00217 * 179.97438 * 6 5 2 8 8 O 1.21595 * 119.99655 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99880 * 179.97438 * 7 6 5 10 10 C 1.40202 * 119.99643 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.97095 * 0.02562 * 10 9 7 12 12 C 1.35240 * 107.86459 * 179.74164 * 11 10 9 13 13 N 1.34965 * 107.86272 * 0.36524 * 12 11 10 14 14 C 1.46495 * 125.98197 * 179.89938 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71610 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31210 * 125.97221 * 179.97438 * 10 9 7 24 24 H 1.09001 * 109.46920 * 300.00157 * 1 2 3 25 25 H 1.08996 * 109.47148 * 59.99928 * 1 2 3 26 26 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47406 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47212 * 300.00439 * 3 2 1 29 29 H 1.09001 * 109.47308 * 60.00081 * 3 2 1 30 30 H 1.08995 * 109.46921 * 299.99621 * 4 2 1 31 31 H 1.08996 * 109.47300 * 59.99951 * 4 2 1 32 32 H 1.09006 * 109.46997 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47198 * 299.99752 * 5 2 1 34 34 H 1.09006 * 109.47181 * 179.97438 * 5 2 1 35 35 H 0.97005 * 120.00288 * 359.97438 * 6 5 2 36 36 H 0.96992 * 120.00253 * 0.02562 * 9 7 6 37 37 H 1.07996 * 126.06696 * 359.96955 * 11 10 9 38 38 H 1.08001 * 126.07362 * 180.25936 * 12 11 10 39 39 H 1.09000 * 109.47378 * 4.71269 * 14 13 12 40 40 H 1.09001 * 109.47153 * 244.71390 * 14 13 12 41 41 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 6 1.8777 -2.9325 2.2598 8 8 2.5768 -2.5347 3.1718 9 7 1.4280 -4.2030 2.2600 10 6 1.7667 -5.0662 3.3116 11 6 2.5618 -4.7409 4.4221 12 6 2.6472 -5.8389 5.2071 13 7 1.9419 -6.8262 4.6161 14 6 1.7722 -8.1881 5.1284 15 6 0.3027 -8.5036 5.2396 16 1 -0.4313 -7.7634 4.9572 17 6 -0.1045 -9.7367 5.7026 18 7 -1.3869 -10.0100 5.8048 19 14 1.1651 -11.0168 6.1916 20 1 1.5029 -11.8542 5.0128 21 1 2.3902 -10.3363 6.6829 22 1 0.6114 -11.8772 7.2678 23 7 1.3954 -6.3191 3.4303 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 0.9937 -2.4196 0.5219 36 1 0.8701 -4.5201 1.5328 37 1 3.0204 -3.7828 4.6170 38 1 3.1857 -5.9131 6.1404 39 1 2.2361 -8.2670 6.1116 40 1 2.2448 -8.8946 4.4460 41 1 -1.6734 -10.8762 6.1343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173343097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:51 Heat of formation + Delta-G solvation = 45.209156 kcal Electronic energy + Delta-G solvation = -21365.520407 eV Core-core repulsion = 18089.417843 eV Total energy + Delta-G solvation = -3276.102564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76443 -39.76111 -37.92924 -34.69613 -33.74971 -33.11198 -31.14117 -29.34932 -27.70312 -27.63534 -27.33933 -26.14017 -22.74665 -21.66437 -20.37265 -19.98216 -19.25812 -17.93545 -17.06679 -16.66514 -15.85261 -15.76095 -14.98313 -14.83326 -14.80284 -14.34806 -13.96897 -13.75304 -13.64961 -13.13087 -13.00971 -12.56134 -12.51804 -12.30649 -12.23865 -12.04754 -11.99126 -11.24105 -11.19312 -11.09910 -11.01821 -10.87058 -10.48426 -10.10891 -9.97299 -9.72412 -9.49661 -9.17459 -8.74903 -8.12940 -7.43973 -6.21742 -4.23784 2.41141 2.63885 3.10739 3.17592 3.22787 3.24914 3.57007 3.84078 4.24366 4.29273 4.31732 4.42290 4.50554 5.00048 5.06386 5.18623 5.24747 5.40095 5.40685 5.43829 5.49569 5.55919 5.60455 5.70227 5.74112 5.81281 5.93852 5.97066 6.20576 6.32134 6.39880 6.50664 6.58814 6.76096 7.00764 7.30401 7.47993 7.85962 7.94315 8.36353 8.62370 8.63522 8.88493 9.33424 10.91026 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041139 B = 0.002880 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.450621 B = 9718.446202 C =10051.535168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.143 4.143 5 C 0.150 3.850 6 N -0.742 5.742 7 C 0.713 3.287 8 O -0.569 6.569 9 N -0.644 5.644 10 C 0.279 3.721 11 C -0.282 4.282 12 C 0.051 3.949 13 N -0.322 5.322 14 C 0.232 3.768 15 C -0.533 4.533 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.889 5.889 19 Si 0.875 3.125 20 H -0.272 1.272 21 H -0.265 1.265 22 H -0.281 1.281 23 N -0.301 5.301 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.407 0.593 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.056 19.193 -12.228 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.201 4.201 5 C 0.026 3.974 6 N -0.400 5.400 7 C 0.412 3.588 8 O -0.444 6.444 9 N -0.294 5.294 10 C 0.025 3.975 11 C -0.313 4.313 12 C -0.099 4.099 13 N -0.103 5.103 14 C 0.113 3.887 15 C -0.572 4.572 16 H 0.103 0.897 17 C -0.128 4.128 18 N -0.526 5.526 19 Si 0.701 3.299 20 H -0.197 1.197 21 H -0.189 1.189 22 H -0.206 1.206 23 N -0.132 5.132 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.241 0.759 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.900 18.354 -11.804 22.887 hybrid contribution 0.295 -0.537 -0.051 0.615 sum 7.195 17.817 -11.856 22.579 Atomic orbital electron populations 1.21901 0.93955 1.02062 1.02195 1.20832 0.96351 0.96144 0.94962 1.21801 1.01324 0.94305 1.02257 1.21897 1.01417 1.00125 0.96624 1.21269 0.99026 0.79731 0.97388 1.45089 1.57167 1.12359 1.25358 1.15634 0.80460 0.79931 0.82801 1.90862 1.41692 1.75549 1.36339 1.41393 1.54245 1.09420 1.24367 1.18800 0.98780 0.89921 0.90020 1.21537 1.11601 1.01364 0.96834 1.22544 0.98789 0.88827 0.99693 1.48581 1.35779 1.11248 1.14720 1.20034 0.99965 0.74562 0.94102 1.21123 0.89377 1.01545 1.45106 0.89653 1.24838 0.95396 0.97742 0.94838 1.69875 1.14165 1.23030 1.45528 0.86884 0.81825 0.82163 0.79045 1.19729 1.18941 1.20619 1.77383 1.23030 1.07908 1.04867 0.92204 0.92330 0.92531 0.92233 0.92126 0.92196 0.92565 0.92332 0.92260 0.91370 0.91412 0.76917 0.75858 0.82005 0.81455 0.92921 0.94531 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.30 37.16 0.31 -0.57 16 2 C -0.08 -0.52 0.78 -154.51 -0.12 -0.64 16 3 C -0.14 -0.76 8.47 37.16 0.31 -0.45 16 4 C -0.14 -0.84 8.30 37.16 0.31 -0.53 16 5 C 0.15 1.35 4.56 -4.05 -0.02 1.33 16 6 N -0.74 -7.58 4.96 -65.23 -0.32 -7.90 16 7 C 0.71 10.65 8.53 -86.91 -0.74 9.91 16 8 O -0.57 -10.41 13.47 5.28 0.07 -10.34 16 9 N -0.64 -10.21 5.46 -15.50 -0.08 -10.29 16 10 C 0.28 5.70 8.11 -154.36 -1.25 4.45 16 11 C -0.28 -5.65 9.61 -39.84 -0.38 -6.03 16 12 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 13 N -0.32 -7.40 3.67 -62.56 -0.23 -7.63 16 14 C 0.23 5.57 5.33 -5.20 -0.03 5.54 16 15 C -0.53 -15.18 9.79 -34.44 -0.34 -15.52 16 16 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 19 Si 0.87 20.29 27.47 -169.99 -4.67 15.62 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 N -0.30 -7.00 12.42 31.44 0.39 -6.61 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.35 6.86 -51.93 -0.36 -0.01 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 6.86 -51.93 -0.36 -0.03 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.05 6.18 -40.82 -0.25 2.80 16 36 H 0.41 5.25 8.84 -40.82 -0.36 4.89 16 37 H 0.16 3.19 5.91 -52.49 -0.31 2.88 16 38 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 39 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 40 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -34.24 337.89 -7.44 -41.68 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.22 Total: 6.07 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.24 Total: 0.33 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.53 Total: -58.45 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.24 -7.44 -41.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173343097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.888 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds