Wall clock time and date at job start Tue Mar 31 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47208 * 2 1 4 4 C 1.52997 * 109.46972 * 240.00214 * 2 1 3 5 5 C 1.52997 * 109.47046 * 119.99921 * 2 1 3 6 6 N 1.46493 * 109.47157 * 60.00195 * 5 2 1 7 7 C 1.34785 * 120.00217 * 179.97438 * 6 5 2 8 8 O 1.21595 * 119.99655 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99880 * 179.97438 * 7 6 5 10 10 C 1.40202 * 119.99643 * 180.02562 * 9 7 6 11 11 C 1.40403 * 125.97095 * 0.02562 * 10 9 7 12 12 C 1.35240 * 107.86459 * 179.74164 * 11 10 9 13 13 N 1.34965 * 107.86272 * 0.36524 * 12 11 10 14 14 C 1.46495 * 125.98197 * 179.89938 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71610 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31210 * 125.97221 * 179.97438 * 10 9 7 24 24 H 1.09001 * 109.46920 * 300.00157 * 1 2 3 25 25 H 1.08996 * 109.47148 * 59.99928 * 1 2 3 26 26 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47406 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47212 * 300.00439 * 3 2 1 29 29 H 1.09001 * 109.47308 * 60.00081 * 3 2 1 30 30 H 1.08995 * 109.46921 * 299.99621 * 4 2 1 31 31 H 1.08996 * 109.47300 * 59.99951 * 4 2 1 32 32 H 1.09006 * 109.46997 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47198 * 299.99752 * 5 2 1 34 34 H 1.09006 * 109.47181 * 179.97438 * 5 2 1 35 35 H 0.97005 * 120.00288 * 359.97438 * 6 5 2 36 36 H 0.96992 * 120.00253 * 0.02562 * 9 7 6 37 37 H 1.07996 * 126.06696 * 359.96955 * 11 10 9 38 38 H 1.08001 * 126.07362 * 180.25936 * 12 11 10 39 39 H 1.09000 * 109.47378 * 4.71269 * 14 13 12 40 40 H 1.09001 * 109.47153 * 244.71390 * 14 13 12 41 41 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 6 1.8777 -2.9325 2.2598 8 8 2.5768 -2.5347 3.1718 9 7 1.4280 -4.2030 2.2600 10 6 1.7667 -5.0662 3.3116 11 6 2.5618 -4.7409 4.4221 12 6 2.6472 -5.8389 5.2071 13 7 1.9419 -6.8262 4.6161 14 6 1.7722 -8.1881 5.1284 15 6 0.3027 -8.5036 5.2396 16 1 -0.4313 -7.7634 4.9572 17 6 -0.1045 -9.7367 5.7026 18 7 -1.3869 -10.0100 5.8048 19 14 1.1651 -11.0168 6.1916 20 1 1.5029 -11.8542 5.0128 21 1 2.3902 -10.3363 6.6829 22 1 0.6114 -11.8772 7.2678 23 7 1.3954 -6.3191 3.4303 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7488 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 0.9937 -2.4196 0.5219 36 1 0.8701 -4.5201 1.5328 37 1 3.0204 -3.7828 4.6170 38 1 3.1857 -5.9131 6.1404 39 1 2.2361 -8.2670 6.1116 40 1 2.2448 -8.8946 4.4460 41 1 -1.6734 -10.8762 6.1343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173343097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:51 Heat of formation + Delta-G solvation = 21.515760 kcal Electronic energy + Delta-G solvation = -21366.547830 eV Core-core repulsion = 18089.417843 eV Total energy + Delta-G solvation = -3277.129987 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24134 -41.01188 -38.71210 -36.19171 -35.23438 -34.55927 -32.92996 -30.96243 -29.06245 -28.17897 -28.11704 -27.15661 -24.55146 -23.02235 -21.88667 -21.34971 -20.08134 -19.10112 -19.02363 -18.19063 -17.25242 -16.88035 -16.35530 -16.06611 -15.88997 -15.57268 -15.18850 -14.78640 -14.69916 -14.48165 -14.33985 -13.97108 -13.82172 -13.67270 -13.00811 -12.95377 -12.74698 -12.63158 -12.51726 -12.17073 -11.81492 -11.76073 -11.69244 -11.64022 -11.58209 -11.46254 -11.13256 -10.86841 -10.19410 -9.72767 -9.03119 -8.36724 -6.46950 1.05288 1.14725 1.37762 1.40446 1.49723 1.70280 2.12128 2.29725 2.41015 2.95935 3.16898 3.70085 3.88004 3.94097 3.98371 4.22812 4.46524 4.61307 4.62298 4.67454 4.79027 4.84280 4.87627 4.89700 4.93471 4.94648 5.06213 5.09304 5.12780 5.19575 5.25150 5.32372 5.43709 5.47392 5.53228 5.81684 5.93524 6.02959 6.42724 6.58378 6.72977 7.12572 7.16345 7.42717 8.80401 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041139 B = 0.002880 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.450621 B = 9718.446202 C =10051.535168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.143 4.143 5 C 0.148 3.852 6 N -0.720 5.720 7 C 0.710 3.290 8 O -0.602 6.602 9 N -0.639 5.639 10 C 0.284 3.716 11 C -0.294 4.294 12 C 0.061 3.939 13 N -0.346 5.346 14 C 0.239 3.761 15 C -0.546 4.546 16 H 0.026 0.974 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.229 1.229 22 H -0.278 1.278 23 N -0.350 5.350 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.410 0.590 36 H 0.419 0.581 37 H 0.167 0.833 38 H 0.210 0.790 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 19.546 -12.551 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.196 4.196 4 C -0.201 4.201 5 C 0.024 3.976 6 N -0.377 5.377 7 C 0.410 3.590 8 O -0.480 6.480 9 N -0.290 5.290 10 C 0.028 3.972 11 C -0.325 4.325 12 C -0.087 4.087 13 N -0.128 5.128 14 C 0.120 3.880 15 C -0.584 4.584 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.582 5.582 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.152 1.152 22 H -0.204 1.204 23 N -0.181 5.181 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.256 0.744 37 H 0.184 0.816 38 H 0.227 0.773 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.845 18.766 -12.189 24.062 hybrid contribution -0.396 -0.461 -0.033 0.609 sum 8.449 18.304 -12.222 23.576 Atomic orbital electron populations 1.21916 0.93597 1.02112 1.02566 1.20780 0.96514 0.96393 0.93699 1.21807 1.01417 0.93588 1.02809 1.21907 1.01254 1.00191 0.96720 1.21423 0.98746 0.78811 0.98605 1.44992 1.56243 1.12199 1.24279 1.15815 0.80151 0.79775 0.83299 1.90828 1.43232 1.76043 1.37919 1.41417 1.54413 1.09359 1.23841 1.19144 0.97606 0.89598 0.90858 1.21722 1.11957 1.01746 0.97045 1.23229 0.97380 0.87562 1.00490 1.48495 1.37318 1.11575 1.15384 1.19894 0.96787 0.75630 0.95727 1.21243 0.91124 1.00761 1.45316 0.95587 1.25933 0.97936 1.00316 0.94336 1.70052 1.17123 1.24093 1.46935 0.85609 0.79496 0.78420 0.78794 1.19037 1.15185 1.20367 1.77301 1.25126 1.09481 1.06153 0.92794 0.91057 0.92649 0.92155 0.90906 0.92335 0.92585 0.91099 0.92566 0.92328 0.92018 0.75190 0.74384 0.81574 0.77295 0.89891 0.93751 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.30 71.98 0.60 -0.92 16 2 C -0.07 -0.81 0.78 -52.18 -0.04 -0.85 16 3 C -0.14 -1.28 8.47 71.98 0.61 -0.67 16 4 C -0.14 -1.40 8.30 71.98 0.60 -0.80 16 5 C 0.15 2.53 4.56 86.38 0.39 2.92 16 6 N -0.72 -14.02 4.96 -478.53 -2.37 -16.39 16 7 C 0.71 20.90 8.53 179.05 1.53 22.43 16 8 O -0.60 -21.90 13.47 -4.02 -0.05 -21.95 16 9 N -0.64 -20.16 5.46 -321.22 -1.75 -21.91 16 10 C 0.28 11.62 8.11 133.31 1.08 12.70 16 11 C -0.29 -11.56 9.61 22.11 0.21 -11.35 16 12 C 0.06 2.32 11.44 83.52 0.96 3.27 16 13 N -0.35 -15.76 3.67 -351.85 -1.29 -17.05 16 14 C 0.24 11.18 5.33 85.63 0.46 11.64 16 15 C -0.55 -31.80 9.79 25.60 0.25 -31.55 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 17 C 0.01 0.77 5.47 84.65 0.46 1.23 16 18 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 19 Si 0.96 40.90 27.47 68.60 1.88 42.79 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.23 -8.45 6.54 99.48 0.65 -7.80 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 N -0.35 -16.53 12.42 -54.43 -0.68 -17.21 16 24 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.59 6.86 -2.39 -0.02 0.57 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.55 6.86 -2.39 -0.02 0.53 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.41 5.75 6.18 -92.70 -0.57 5.18 16 36 H 0.42 10.75 8.84 -92.71 -0.82 9.93 16 37 H 0.17 6.43 5.91 -2.91 -0.02 6.41 16 38 H 0.21 5.83 8.06 -2.91 -0.02 5.81 16 39 H 0.08 3.37 7.12 -2.39 -0.02 3.35 16 40 H 0.04 2.00 7.57 -2.39 -0.02 1.98 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -77.34 337.89 2.74 -74.60 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.41 Total: 27.24 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 7.10 Total: 8.05 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -5.79 Total: -130.74 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.88 Total: 42.79 kcal Total: -77.34 2.74 -74.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173343097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.119 kcal (2) G-P(sol) polarization free energy of solvation -77.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds