Wall clock time and date at job start Tue Mar 31 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30719 * 125.52005 * 2 1 4 4 N 1.40449 * 106.78693 * 180.02562 * 3 2 1 5 5 H 0.96994 * 126.81876 * 180.02562 * 4 3 2 6 6 C 1.34431 * 106.35683 * 0.02562 * 4 3 2 7 7 C 1.50696 * 125.96143 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.50172 * 245.08291 * 7 6 4 9 9 C 1.53103 * 109.50724 * 124.99840 * 7 6 4 10 10 N 1.47015 * 109.25538 * 183.21284 * 9 7 6 11 11 C 1.46897 * 110.99783 * 182.38968 * 10 9 7 12 12 C 1.52995 * 109.47144 * 170.32151 * 11 10 9 13 13 C 1.53002 * 109.47182 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47002 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00433 * 359.97438 * 14 13 12 16 16 C 1.37885 * 120.00042 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99874 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47227 * 90.00108 * 18 16 14 20 20 H 1.48493 * 109.47247 * 210.00211 * 18 16 14 21 21 H 1.48508 * 109.47206 * 330.00243 * 18 16 14 22 22 C 1.47016 * 110.75076 * 58.61911 * 10 9 7 23 23 C 1.53103 * 109.29298 * 301.35892 * 22 10 9 24 24 O 1.43016 * 109.50721 * 5.21533 * 7 6 4 25 25 N 1.30840 * 108.07371 * 0.23742 * 6 4 3 26 26 H 1.09004 * 109.46945 * 89.97434 * 1 2 3 27 27 H 1.08999 * 109.46680 * 209.96897 * 1 2 3 28 28 H 1.09001 * 109.47333 * 329.97664 * 1 2 3 29 29 H 1.08998 * 109.50706 * 63.27986 * 9 7 6 30 30 H 1.08997 * 109.53776 * 303.16827 * 9 7 6 31 31 H 1.08997 * 109.47367 * 290.32232 * 11 10 9 32 32 H 1.09007 * 109.47013 * 50.32201 * 11 10 9 33 33 H 1.09007 * 109.47126 * 300.00279 * 12 11 10 34 34 H 1.08999 * 109.47300 * 60.00404 * 12 11 10 35 35 H 1.08997 * 109.47077 * 299.99928 * 13 12 11 36 36 H 1.08993 * 109.47309 * 60.00111 * 13 12 11 37 37 H 0.96996 * 120.00049 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.50934 * 61.31617 * 22 10 9 39 39 H 1.09003 * 109.50733 * 181.40211 * 22 10 9 40 40 H 1.09004 * 109.50456 * 176.81005 * 23 22 10 41 41 H 1.09008 * 109.50567 * 296.93791 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2665 1.0639 0.0000 4 7 3.5966 0.6129 -0.0006 5 1 4.3964 1.1615 -0.0004 6 6 3.5408 -0.7303 -0.0015 7 6 4.7229 -1.6650 -0.0030 8 1 4.7391 -2.2296 -0.9352 9 6 4.6112 -2.6322 1.1786 10 7 5.8043 -3.4904 1.2171 11 6 5.7109 -4.4732 2.3049 12 6 6.8415 -5.4948 2.1676 13 6 6.7439 -6.5188 3.3002 14 6 7.8579 -7.5247 3.1654 15 1 8.5646 -7.4421 2.3529 16 6 7.9750 -8.5504 4.0793 17 7 8.9469 -9.4286 3.9613 18 14 6.7532 -8.6929 5.4850 19 1 5.6060 -9.5348 5.0604 20 1 7.4178 -9.3166 6.6573 21 1 6.2642 -7.3402 5.8549 22 6 7.0248 -2.6803 1.3424 23 6 7.1132 -1.7126 0.1593 24 8 5.9303 -0.9084 0.1193 25 7 2.2813 -1.0843 -0.0066 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3634 0.8898 0.5142 29 1 3.7217 -3.2508 1.0598 30 1 4.5397 -2.0663 2.1074 31 1 5.7969 -3.9628 3.2641 32 1 4.7501 -4.9851 2.2506 33 1 6.7556 -6.0052 1.2083 34 1 7.8023 -4.9829 2.2220 35 1 6.8297 -6.0087 4.2596 36 1 5.7832 -7.0306 3.2455 37 1 9.0290 -10.1504 4.6040 38 1 6.9922 -2.1146 2.2736 39 1 7.8970 -3.3340 1.3440 40 1 7.9868 -1.0715 0.2780 41 1 7.1998 -2.2787 -0.7683 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173666080.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:49 Heat of formation + Delta-G solvation = 36.719111 kcal Electronic energy + Delta-G solvation = -21594.839764 eV Core-core repulsion = 18318.369044 eV Total energy + Delta-G solvation = -3276.470720 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.47493 -39.84217 -36.50309 -33.75964 -33.67781 -32.86293 -31.60338 -30.77590 -28.63740 -28.25033 -25.97940 -24.49966 -22.86679 -21.51352 -20.77239 -20.50617 -19.96765 -18.39807 -16.84172 -16.47745 -16.36728 -16.08302 -15.42754 -15.32809 -14.74359 -14.40212 -14.07473 -13.88933 -13.73420 -13.30586 -13.21372 -12.69717 -12.59499 -12.37709 -12.09814 -11.92914 -11.70028 -11.51929 -11.11011 -10.87279 -10.73760 -10.36273 -10.32494 -10.21471 -9.94876 -9.76765 -9.71324 -9.50647 -9.18682 -8.54517 -8.38490 -6.04981 -4.02958 1.27103 2.32413 2.54288 2.83943 3.30243 3.37652 3.40809 3.68762 4.05982 4.44558 4.45852 4.50279 4.59593 4.76647 4.86613 5.05282 5.12593 5.25085 5.29033 5.35296 5.36748 5.47605 5.51117 5.62339 5.67829 5.74397 5.83183 5.92810 6.08357 6.16349 6.45337 6.47036 6.60747 6.76246 6.84157 7.02579 7.05711 7.30255 7.42890 7.78931 7.79677 8.53491 9.00193 9.57637 11.08518 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027229 B = 0.003112 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.070021 B = 8996.441803 C = 9800.487048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.226 3.774 3 N -0.319 5.319 4 N -0.465 5.465 5 H 0.446 0.554 6 C 0.300 3.700 7 C 0.175 3.825 8 H 0.106 0.894 9 C 0.037 3.963 10 N -0.534 5.534 11 C 0.054 3.946 12 C -0.097 4.097 13 C -0.013 4.013 14 C -0.519 4.519 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.010 3.990 23 C 0.071 3.929 24 O -0.394 6.394 25 N -0.531 5.531 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.013 0.987 36 H 0.012 0.988 37 H 0.263 0.737 38 H 0.043 0.957 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 20.616 -8.573 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.056 4.056 3 N -0.149 5.149 4 N -0.182 5.182 5 H 0.293 0.707 6 C 0.021 3.979 7 C 0.115 3.885 8 H 0.123 0.877 9 C -0.093 4.093 10 N -0.259 5.259 11 C -0.072 4.072 12 C -0.135 4.135 13 C -0.051 4.051 14 C -0.557 4.557 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.118 4.118 23 C -0.005 4.005 24 O -0.313 6.313 25 N -0.262 5.262 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.713 20.789 -8.926 25.476 hybrid contribution 0.194 0.242 1.601 1.631 sum -11.519 21.031 -7.325 25.072 Atomic orbital electron populations 1.20117 0.83602 1.04219 1.03869 1.24359 0.98422 0.85313 0.97534 1.78000 0.86835 1.22479 1.27619 1.47885 1.07901 1.06273 1.56177 0.70748 1.23773 0.94274 0.83861 0.96024 1.20286 0.79524 0.87777 1.00957 0.87660 1.22599 0.95643 0.95021 0.96008 1.62278 1.00890 1.15186 1.47527 1.22363 1.01558 0.93050 0.90261 1.21482 0.95574 0.95509 1.00908 1.19550 0.97270 0.94472 0.93841 1.21128 1.12226 1.09447 1.12909 0.91018 1.25041 0.95357 0.95460 0.97706 1.69914 1.31969 1.15445 1.36998 0.86772 0.81620 0.78625 0.82207 1.20245 1.21444 1.19112 1.22901 0.95270 0.96093 0.97584 1.22805 0.85936 0.93252 0.98487 1.87786 1.14223 1.34319 1.94970 1.70281 0.99107 1.31149 1.25647 0.89707 0.89314 0.89949 0.88063 0.94037 0.95029 0.90690 0.91787 0.92832 0.96881 0.96974 0.92752 0.93924 0.88091 0.87667 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.23 2.62 8.14 -156.85 -1.28 1.34 16 3 N -0.32 -3.87 12.80 32.42 0.41 -3.46 16 4 N -0.46 -5.06 7.28 32.62 0.24 -4.82 16 5 H 0.45 3.81 8.64 -182.34 -1.57 2.23 16 6 C 0.30 3.50 7.31 -155.69 -1.14 2.36 16 7 C 0.18 1.88 3.36 -27.83 -0.09 1.79 16 8 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 9 C 0.04 0.44 4.89 -3.71 -0.02 0.43 16 10 N -0.53 -7.10 4.73 -234.30 -1.11 -8.21 16 11 C 0.05 0.85 4.96 -3.83 -0.02 0.83 16 12 C -0.10 -1.84 5.08 -26.73 -0.14 -1.97 16 13 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 14 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 18 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C 0.01 0.11 5.43 -3.71 -0.02 0.09 16 23 C 0.07 0.66 7.02 37.21 0.26 0.92 16 24 O -0.39 -3.98 10.01 -35.23 -0.35 -4.34 16 25 N -0.53 -6.74 11.16 -8.16 -0.09 -6.83 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 1.24 8.09 -51.93 -0.42 0.82 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.00 6.50 -51.93 -0.34 0.66 16 35 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 36 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 1.23 6.37 -51.93 -0.33 0.90 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -32.71 334.15 -10.02 -42.73 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.66 Total: -2.13 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.60 Total: -7.91 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.23 Total: -50.40 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.35 Total: -4.34 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.71 -10.02 -42.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173666080.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.452 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds