Wall clock time and date at job start Tue Mar 31 2020 02:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.47214 * 2 1 4 4 C 1.52995 * 109.46975 * 240.00211 * 2 1 3 5 5 N 1.46500 * 109.47056 * 119.99997 * 2 1 3 6 6 C 1.34808 * 126.59336 * 75.00237 * 5 2 1 7 7 C 1.36595 * 106.83754 * 179.97438 * 6 5 2 8 8 C 1.47531 * 125.76852 * 179.73649 * 7 6 5 9 9 O 1.21589 * 120.00124 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99936 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00416 * 179.97438 * 10 8 7 12 12 C 1.52991 * 109.47571 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47216 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47078 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00428 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00091 * 179.97438 * 14 13 12 17 17 N 1.31507 * 119.99853 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00100 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47275 * 90.00343 * 18 16 14 20 20 H 1.48499 * 109.47174 * 210.00166 * 18 16 14 21 21 H 1.48500 * 109.47190 * 330.00146 * 18 16 14 22 22 N 1.34401 * 108.46194 * 359.97438 * 7 6 5 23 23 N 1.28757 * 109.51883 * 0.02562 * 22 7 6 24 24 H 1.08999 * 109.46593 * 300.00249 * 1 2 3 25 25 H 1.08998 * 109.47121 * 59.99820 * 1 2 3 26 26 H 1.08996 * 109.47112 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47139 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.46747 * 299.99987 * 3 2 1 29 29 H 1.09001 * 109.46840 * 60.00098 * 3 2 1 30 30 H 1.09006 * 109.47042 * 299.99710 * 4 2 1 31 31 H 1.08995 * 109.47565 * 59.99658 * 4 2 1 32 32 H 1.09002 * 109.47003 * 180.02562 * 4 2 1 33 33 H 1.07995 * 126.58307 * 359.95683 * 6 5 2 34 34 H 0.97005 * 120.00097 * 359.97438 * 10 8 7 35 35 H 1.08993 * 109.46829 * 300.00425 * 11 10 8 36 36 H 1.09006 * 109.46501 * 59.99734 * 11 10 8 37 37 H 1.09007 * 109.47398 * 300.00330 * 12 11 10 38 38 H 1.08998 * 109.47471 * 60.00090 * 12 11 10 39 39 H 1.09000 * 109.47095 * 299.99707 * 13 12 11 40 40 H 1.08996 * 109.47295 * 60.00022 * 13 12 11 41 41 H 0.97000 * 120.00782 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0222 -2.0215 1.4105 7 6 2.5638 -2.2215 2.6484 8 6 2.7607 -3.5290 3.3026 9 8 2.4288 -4.5503 2.7323 10 7 3.3093 -3.5916 4.5320 11 6 3.5043 -4.8900 5.1820 12 6 4.1400 -4.6813 6.5579 13 6 4.3441 -6.0373 7.2364 14 6 4.9697 -5.8317 8.5919 15 1 5.1992 -4.8336 8.9350 16 6 5.2492 -6.9177 9.3941 17 7 4.9703 -8.1330 8.9762 18 14 6.0239 -6.6627 11.0746 19 1 4.9553 -6.4999 12.0928 20 1 6.8597 -7.8411 11.4183 21 1 6.8728 -5.4445 11.0487 22 7 2.8824 -1.0252 3.1718 23 7 2.5725 -0.0945 2.3378 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 1.6652 -2.7835 0.7335 34 1 3.5751 -2.7769 4.9866 35 1 2.5410 -5.3865 5.2980 36 1 4.1603 -5.5082 4.5691 37 1 5.1034 -4.1849 6.4415 38 1 3.4844 -4.0629 7.1710 39 1 3.3809 -6.5341 7.3528 40 1 4.9999 -6.6554 6.6232 41 1 5.1672 -8.8971 9.5403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191260053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:48 Heat of formation + Delta-G solvation = 10.903670 kcal Electronic energy + Delta-G solvation = -20994.044613 eV Core-core repulsion = 17716.454452 eV Total energy + Delta-G solvation = -3277.590161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 4.32 seconds Orbital eigenvalues (eV) -43.33602 -40.49045 -38.30691 -36.98535 -35.20648 -33.27677 -32.92281 -31.79273 -28.77730 -28.41721 -28.32754 -25.59430 -24.70564 -23.77149 -22.30206 -21.78114 -20.72493 -18.72420 -18.38723 -17.32513 -17.21953 -16.98072 -16.51936 -16.43466 -15.72168 -15.40483 -15.23758 -14.94654 -14.82828 -14.24724 -13.77979 -13.63008 -13.52107 -13.36820 -13.33086 -13.18528 -12.77575 -12.74654 -12.55285 -12.45663 -12.40907 -12.32912 -11.97348 -11.67483 -11.65198 -11.28776 -11.27854 -11.08318 -10.54123 -10.45973 -10.05966 -8.18554 -6.29575 0.13350 0.58974 1.02333 1.42084 1.43480 1.54593 2.11452 2.20260 2.43364 3.14747 3.14984 3.24446 3.64867 3.71620 3.77208 3.91325 4.15312 4.18741 4.22278 4.51710 4.56541 4.57769 4.60451 4.67896 4.74859 4.79744 4.81202 4.95143 4.97578 5.07966 5.17244 5.19631 5.26881 5.38120 5.53042 5.53912 5.72271 5.85382 6.23850 6.41344 6.87095 6.89474 7.10244 7.39530 8.93524 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.046931 B = 0.002460 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.483637 B =11377.423278 C =11766.934423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 C -0.148 4.148 4 C -0.161 4.161 5 N -0.338 5.338 6 C 0.108 3.892 7 C -0.122 4.122 8 C 0.600 3.400 9 O -0.573 6.573 10 N -0.705 5.705 11 C 0.131 3.869 12 C -0.104 4.104 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.063 0.937 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.262 1.262 22 N -0.228 5.228 23 N -0.081 5.081 24 H 0.054 0.946 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.229 0.771 34 H 0.414 0.586 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.065 0.935 39 H -0.005 1.005 40 H -0.004 1.004 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 20.230 -24.155 32.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.124 5.124 6 C -0.050 4.050 7 C -0.262 4.262 8 C 0.385 3.615 9 O -0.452 6.452 10 N -0.355 5.355 11 C 0.007 3.993 12 C -0.142 4.142 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.187 1.187 22 N -0.101 5.101 23 N -0.061 5.061 24 H 0.073 0.927 25 H 0.133 0.867 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.251 0.749 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.181 20.699 -23.861 32.895 hybrid contribution 0.292 -0.968 0.845 1.317 sum -8.889 19.731 -23.015 31.592 Atomic orbital electron populations 1.22319 0.90413 1.04145 1.04772 1.21624 0.96264 0.94368 0.80003 1.22027 1.01819 0.92026 1.04636 1.22353 1.02118 1.01883 0.95561 1.51202 1.40608 1.05008 1.15566 1.23609 0.96564 0.87769 0.97043 1.21360 1.14915 0.92807 0.97123 1.17055 0.76971 0.86354 0.81087 1.90774 1.53331 1.35719 1.65389 1.45858 1.61735 1.10788 1.17120 1.21343 1.00343 0.84022 0.93568 1.21617 1.00225 0.99119 0.93247 1.18931 0.95293 0.92483 0.94534 1.21677 1.40609 0.93340 1.02359 0.91830 1.26003 0.96374 0.94890 1.02771 1.70099 1.49289 0.98957 1.39039 0.85421 0.78497 0.77934 0.79026 1.19799 1.20860 1.18661 1.74628 1.13804 0.98299 1.23376 1.81863 1.16352 1.17091 0.90782 0.92673 0.86718 0.91100 0.92412 0.87073 0.92047 0.90444 0.86596 0.92137 0.75453 0.74934 0.92307 0.92309 0.91680 0.91663 0.98627 0.98608 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.74 71.98 0.63 -0.29 16 2 C 0.16 1.39 1.25 3.61 0.00 1.39 16 3 C -0.15 -1.19 8.11 71.98 0.58 -0.61 16 4 C -0.16 -0.73 8.30 71.98 0.60 -0.13 16 5 N -0.34 -5.88 3.44 -306.90 -1.06 -6.94 16 6 C 0.11 2.11 10.43 83.85 0.87 2.98 16 7 C -0.12 -3.31 6.99 40.82 0.29 -3.03 16 8 C 0.60 19.52 7.82 86.69 0.68 20.20 16 9 O -0.57 -21.42 16.86 -4.00 -0.07 -21.48 16 10 N -0.70 -22.90 5.55 -466.29 -2.59 -25.49 16 11 C 0.13 4.87 5.67 86.38 0.49 5.36 16 12 C -0.10 -4.27 5.27 30.59 0.16 -4.11 16 13 C 0.03 1.35 4.97 29.85 0.15 1.49 16 14 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 15 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 16 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 17 N -0.93 -57.62 13.28 21.45 0.28 -57.34 16 18 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 N -0.23 -6.43 12.04 -49.99 -0.60 -7.03 16 23 N -0.08 -2.00 12.91 37.02 0.48 -1.52 16 24 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.06 0.69 8.06 -2.39 -0.02 0.67 16 30 H 0.08 0.28 7.44 -2.38 -0.02 0.26 16 31 H 0.12 -0.09 8.14 -2.39 -0.02 -0.10 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.23 2.95 7.63 -2.91 -0.02 2.93 16 34 H 0.41 12.19 8.16 -92.70 -0.76 11.44 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -74.39 350.26 3.88 -70.51 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.26 Total: 9.75 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.15 Total: -7.22 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -3.48 Total: -98.32 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.07 Total: -21.48 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -74.39 3.88 -70.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191260053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.414 kcal (2) G-P(sol) polarization free energy of solvation -74.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.32 seconds