Wall clock time and date at job start Tue Mar 31 2020 01:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.39774 * 125.84087 * 124.71300 * 4 3 2 6 6 C 1.36097 * 107.82351 * 179.86828 * 5 4 3 7 7 N 1.39505 * 126.21063 * 180.14048 * 6 5 4 8 8 C 1.34774 * 120.00250 * 0.30182 * 7 6 5 9 9 O 1.21592 * 119.99881 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99947 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99595 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46878 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.46938 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99769 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99745 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99771 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47373 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47265 * 120.00051 * 17 15 13 20 20 H 1.48505 * 109.47180 * 240.00179 * 17 15 13 21 21 N 1.35248 * 107.57598 * 0.39309 * 6 5 4 22 22 C 1.46493 * 126.04899 * 179.78280 * 21 6 5 23 23 N 1.30847 * 125.84196 * 305.02765 * 4 3 2 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08001 * 126.08241 * 0.02601 * 5 4 3 32 32 H 0.97004 * 120.00148 * 180.29187 * 7 6 5 33 33 H 0.96998 * 120.00074 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.47037 * 299.99417 * 11 10 8 35 35 H 1.08998 * 109.47821 * 60.00113 * 11 10 8 36 36 H 1.09005 * 109.46852 * 299.99581 * 12 11 10 37 37 H 1.08993 * 109.47386 * 59.99865 * 12 11 10 38 38 H 0.96994 * 119.99719 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.47524 * 269.98944 * 22 21 6 40 40 H 1.09002 * 109.46873 * 29.98503 * 22 21 6 41 41 H 1.09000 * 109.46824 * 149.98280 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3649 2.0880 -0.9323 6 6 5.6593 1.8508 -0.5851 7 7 6.7909 2.3185 -1.2538 8 6 6.6549 3.0881 -2.3518 9 8 5.5459 3.3744 -2.7599 10 7 7.7481 3.5403 -2.9974 11 6 7.6002 4.3764 -4.1912 12 6 8.9839 4.7516 -4.7257 13 6 8.8317 5.6111 -5.9542 14 1 7.8467 5.8648 -6.3171 15 6 9.9501 6.0746 -6.6141 16 7 11.1496 5.7661 -6.1718 17 14 9.7615 7.1406 -8.1364 18 1 8.3187 7.3415 -8.4244 19 1 10.4070 8.4573 -7.9018 20 1 10.4091 6.4709 -9.2930 21 7 5.6495 1.0747 0.5224 22 6 6.8275 0.5750 1.2355 23 7 4.3135 0.8337 0.8675 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 4.0294 2.6731 -1.7758 32 1 7.6756 2.0899 -0.9283 33 1 8.6328 3.3122 -2.6716 34 1 7.0524 3.8249 -4.9554 35 1 7.0523 5.2830 -3.9344 36 1 9.5313 5.3032 -3.9613 37 1 9.5322 3.8453 -4.9825 38 1 11.9364 6.0924 -6.6359 39 1 7.1197 -0.3905 0.8228 40 1 7.6488 1.2826 1.1209 41 1 6.5908 0.4615 2.2934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273224625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:28 Heat of formation + Delta-G solvation = 32.580102 kcal Electronic energy + Delta-G solvation = -21040.640045 eV Core-core repulsion = 17763.989844 eV Total energy + Delta-G solvation = -3276.650201 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50872 -39.63134 -35.85254 -35.12643 -34.40652 -32.91550 -32.81398 -30.01913 -28.65364 -28.28328 -25.56514 -24.84547 -22.21046 -21.97242 -20.98667 -20.13162 -20.02349 -18.02745 -17.31402 -16.44063 -16.03308 -15.61318 -15.13922 -14.94348 -14.57275 -14.55557 -13.94612 -13.75547 -13.58636 -13.49287 -13.40271 -12.77443 -12.56068 -12.34590 -12.22936 -11.56734 -11.40285 -11.26115 -11.13297 -10.98409 -10.75412 -10.66527 -10.46380 -10.38953 -9.88828 -9.65678 -9.31450 -8.84071 -8.70125 -8.45636 -7.92528 -6.14461 -4.17265 1.84335 2.01870 2.84540 2.90058 3.25838 3.33786 3.38956 3.45202 4.23554 4.34553 4.41912 4.71738 4.87280 4.91653 4.96999 5.14244 5.23166 5.24799 5.35469 5.52492 5.62382 5.68157 5.75539 5.85529 5.99752 6.08505 6.13973 6.20678 6.27262 6.28326 6.65599 6.74178 6.86074 6.92725 7.14216 7.47106 7.54347 7.76836 7.84154 8.07378 8.23544 8.66353 8.89002 9.48002 10.97220 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028203 B = 0.002759 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.571516 B =10147.445980 C =11036.808296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.037 4.037 4 C 0.088 3.912 5 C -0.279 4.279 6 C 0.333 3.667 7 N -0.667 5.667 8 C 0.705 3.295 9 O -0.563 6.563 10 N -0.728 5.728 11 C 0.139 3.861 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 N -0.397 5.397 22 C 0.102 3.898 23 N -0.297 5.297 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.175 0.825 32 H 0.404 0.596 33 H 0.396 0.604 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 -11.400 15.270 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.076 4.076 4 C -0.078 4.078 5 C -0.311 4.311 6 C 0.112 3.888 7 N -0.317 5.317 8 C 0.404 3.596 9 O -0.438 6.438 10 N -0.381 5.381 11 C 0.017 3.983 12 C -0.025 4.025 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 N -0.185 5.185 22 C -0.040 4.040 23 N -0.121 5.121 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.192 0.808 32 H 0.238 0.762 33 H 0.229 0.771 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.572 -11.807 15.855 22.906 hybrid contribution 1.335 0.798 -1.124 1.919 sum -10.237 -11.008 14.731 21.047 Atomic orbital electron populations 1.21783 0.95700 1.01590 1.01880 1.21466 0.95487 0.96034 1.02605 1.20054 0.86341 0.97862 1.03329 1.22164 0.96500 0.95861 0.93242 1.21569 0.88828 1.13621 1.07057 1.17675 0.88527 0.94545 0.88053 1.42037 1.06883 1.53765 1.29058 1.15757 0.85829 0.78812 0.79157 1.90853 1.23869 1.61730 1.67378 1.45546 1.06505 1.54856 1.31214 1.21731 1.01583 0.92171 0.82849 1.19348 0.89564 0.97192 0.96427 1.21066 0.93021 1.31337 1.10527 0.92060 1.25001 0.95194 0.96339 0.97798 1.69958 0.97543 1.45454 1.40356 0.86442 0.78416 0.80053 0.82578 1.19512 1.20930 1.20923 1.48365 1.06181 1.42150 1.21782 1.21756 0.83981 0.99810 0.98426 1.77323 0.84676 1.26185 1.23889 0.92809 0.92724 0.92544 0.91533 0.91922 0.89763 0.90360 0.80792 0.76150 0.77097 0.92279 0.92283 0.95879 0.95878 0.92866 0.90933 0.90250 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.11 5.89 -26.73 -0.16 -1.27 16 3 C -0.04 -0.39 5.79 -27.89 -0.16 -0.55 16 4 C 0.09 1.23 6.48 -82.44 -0.53 0.70 16 5 C -0.28 -4.41 9.57 -39.78 -0.38 -4.79 16 6 C 0.33 4.81 7.66 -153.14 -1.17 3.64 16 7 N -0.67 -8.69 5.42 -15.84 -0.09 -8.77 16 8 C 0.71 11.74 8.53 -86.92 -0.74 11.00 16 9 O -0.56 -11.32 13.47 5.28 0.07 -11.24 16 10 N -0.73 -11.87 5.56 -65.22 -0.36 -12.24 16 11 C 0.14 2.81 5.61 -4.04 -0.02 2.78 16 12 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 13 C -0.52 -14.05 9.11 -34.44 -0.31 -14.36 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 17 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 N -0.40 -5.02 4.02 -67.18 -0.27 -5.29 16 22 C 0.10 0.78 11.28 59.84 0.68 1.45 16 23 N -0.30 -4.19 12.53 33.65 0.42 -3.77 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.17 3.06 5.82 -52.49 -0.31 2.75 16 32 H 0.40 3.70 7.98 -40.82 -0.33 3.37 16 33 H 0.40 5.35 8.49 -40.82 -0.35 5.01 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.43 7.50 -51.93 -0.39 0.04 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -32.91 347.19 -8.36 -41.27 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.40 Total: 4.19 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.68 Total: -0.52 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.44 Total: -54.91 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.91 -8.36 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273224625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.848 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds