Wall clock time and date at job start Tue Mar 31 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.39774 * 125.84087 * 124.71300 * 4 3 2 6 6 C 1.36097 * 107.82351 * 179.86828 * 5 4 3 7 7 N 1.39505 * 126.21063 * 180.14048 * 6 5 4 8 8 C 1.34774 * 120.00250 * 0.30182 * 7 6 5 9 9 O 1.21592 * 119.99881 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99947 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99595 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46878 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.46938 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99769 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99745 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99771 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47373 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47265 * 120.00051 * 17 15 13 20 20 H 1.48505 * 109.47180 * 240.00179 * 17 15 13 21 21 N 1.35248 * 107.57598 * 0.39309 * 6 5 4 22 22 C 1.46493 * 126.04899 * 179.78280 * 21 6 5 23 23 N 1.30847 * 125.84196 * 305.02765 * 4 3 2 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08001 * 126.08241 * 0.02601 * 5 4 3 32 32 H 0.97004 * 120.00148 * 180.29187 * 7 6 5 33 33 H 0.96998 * 120.00074 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.47037 * 299.99417 * 11 10 8 35 35 H 1.08998 * 109.47821 * 60.00113 * 11 10 8 36 36 H 1.09005 * 109.46852 * 299.99581 * 12 11 10 37 37 H 1.08993 * 109.47386 * 59.99865 * 12 11 10 38 38 H 0.96994 * 119.99719 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.47524 * 269.98944 * 22 21 6 40 40 H 1.09002 * 109.46873 * 29.98503 * 22 21 6 41 41 H 1.09000 * 109.46824 * 149.98280 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3649 2.0880 -0.9323 6 6 5.6593 1.8508 -0.5851 7 7 6.7909 2.3185 -1.2538 8 6 6.6549 3.0881 -2.3518 9 8 5.5459 3.3744 -2.7599 10 7 7.7481 3.5403 -2.9974 11 6 7.6002 4.3764 -4.1912 12 6 8.9839 4.7516 -4.7257 13 6 8.8317 5.6111 -5.9542 14 1 7.8467 5.8648 -6.3171 15 6 9.9501 6.0746 -6.6141 16 7 11.1496 5.7661 -6.1718 17 14 9.7615 7.1406 -8.1364 18 1 8.3187 7.3415 -8.4244 19 1 10.4070 8.4573 -7.9018 20 1 10.4091 6.4709 -9.2930 21 7 5.6495 1.0747 0.5224 22 6 6.8275 0.5750 1.2355 23 7 4.3135 0.8337 0.8675 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 4.0294 2.6731 -1.7758 32 1 7.6756 2.0899 -0.9283 33 1 8.6328 3.3122 -2.6716 34 1 7.0524 3.8249 -4.9554 35 1 7.0523 5.2830 -3.9344 36 1 9.5313 5.3032 -3.9613 37 1 9.5322 3.8453 -4.9825 38 1 11.9364 6.0924 -6.6359 39 1 7.1197 -0.3905 0.8228 40 1 7.6488 1.2826 1.1209 41 1 6.5908 0.4615 2.2934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273224625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:27 Heat of formation + Delta-G solvation = 11.209720 kcal Electronic energy + Delta-G solvation = -21041.566734 eV Core-core repulsion = 17763.989844 eV Total energy + Delta-G solvation = -3277.576890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.60646 -40.94187 -36.99150 -36.53797 -35.55400 -34.83533 -33.65620 -31.71691 -29.81879 -29.15653 -26.80897 -26.28340 -23.66368 -22.77512 -22.60648 -21.37316 -21.08805 -19.24259 -18.43035 -18.41605 -17.17591 -16.81125 -16.48373 -16.35402 -15.95993 -15.57913 -15.26202 -15.06722 -14.84616 -14.51060 -14.28612 -14.19731 -13.57164 -13.32821 -13.20597 -13.02799 -12.93240 -12.51813 -12.42998 -12.29083 -12.14285 -11.94752 -11.74451 -11.60918 -11.49406 -11.33768 -11.10994 -10.60447 -10.17262 -9.76808 -9.09389 -8.23585 -6.32928 0.73912 0.89922 1.42090 1.44041 1.56442 1.69617 1.88410 2.15904 2.41796 3.06408 3.12062 3.50568 3.87045 4.16395 4.23536 4.36172 4.38244 4.50780 4.52710 4.53599 4.56837 4.62998 4.80728 4.87281 4.88465 4.96944 5.03086 5.05853 5.21872 5.29170 5.36526 5.49696 5.50103 5.60536 5.71329 5.81367 5.83292 6.05915 6.17359 6.67682 6.80631 6.91181 7.34389 7.36526 8.88394 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028203 B = 0.002759 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.571516 B =10147.445980 C =11036.808296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.037 4.037 4 C 0.085 3.915 5 C -0.309 4.309 6 C 0.325 3.675 7 N -0.646 5.646 8 C 0.707 3.293 9 O -0.598 6.598 10 N -0.718 5.718 11 C 0.160 3.840 12 C 0.022 3.978 13 C -0.543 4.543 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.963 3.037 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.278 1.278 21 N -0.390 5.390 22 C 0.088 3.912 23 N -0.309 5.309 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.424 0.576 33 H 0.411 0.589 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.011 0.989 37 H 0.011 0.989 38 H 0.265 0.735 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -11.852 16.000 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.081 4.081 5 C -0.342 4.342 6 C 0.103 3.897 7 N -0.298 5.298 8 C 0.407 3.593 9 O -0.476 6.476 10 N -0.373 5.373 11 C 0.036 3.964 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.788 3.212 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.204 1.204 21 N -0.178 5.178 22 C -0.051 4.051 23 N -0.132 5.132 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.169 0.831 32 H 0.263 0.737 33 H 0.247 0.753 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.580 -12.300 16.644 23.715 hybrid contribution 1.378 0.888 -1.279 2.079 sum -10.202 -11.412 15.365 21.688 Atomic orbital electron populations 1.21755 0.94014 1.02310 1.02477 1.21399 0.96879 0.94962 1.01731 1.20176 0.84575 0.98828 1.04051 1.22534 0.97860 0.95209 0.92515 1.21536 0.90278 1.14857 1.07486 1.17661 0.88354 0.94906 0.88768 1.41603 1.07760 1.52635 1.27792 1.15749 0.85033 0.78865 0.79677 1.90854 1.25227 1.62996 1.68539 1.45149 1.07440 1.54442 1.30283 1.21203 0.99053 0.92254 0.83896 1.19152 0.91063 0.95986 0.95321 1.21488 0.93105 1.31853 1.11726 0.92183 1.25837 0.94911 0.97617 1.00803 1.70052 0.98237 1.46549 1.41756 0.85424 0.78574 0.78328 0.78896 1.18935 1.20374 1.20365 1.48700 1.06877 1.41085 1.21097 1.22219 0.82890 1.01241 0.98777 1.77275 0.85471 1.26383 1.24105 0.92040 0.91857 0.92226 0.92099 0.93049 0.89466 0.89141 0.83086 0.73687 0.75254 0.93170 0.93159 0.97035 0.97049 0.92601 0.89300 0.87735 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.31 16 2 C -0.11 -2.04 5.89 30.59 0.18 -1.86 16 3 C -0.04 -0.77 5.79 29.85 0.17 -0.60 16 4 C 0.08 2.34 6.48 43.08 0.28 2.62 16 5 C -0.31 -9.92 9.57 22.14 0.21 -9.71 16 6 C 0.33 9.13 7.66 131.31 1.01 10.14 16 7 N -0.65 -15.95 5.42 -322.30 -1.75 -17.69 16 8 C 0.71 23.19 8.53 179.05 1.53 24.72 16 9 O -0.60 -24.39 13.47 -4.01 -0.05 -24.45 16 10 N -0.72 -22.93 5.56 -478.52 -2.66 -25.59 16 11 C 0.16 6.47 5.61 86.38 0.48 6.95 16 12 C 0.02 1.07 5.09 29.85 0.15 1.22 16 13 C -0.54 -29.38 9.11 25.60 0.23 -29.15 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 15 C 0.01 0.39 5.46 84.66 0.46 0.85 16 16 N -0.93 -52.98 13.29 21.45 0.28 -52.70 16 17 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 21 N -0.39 -9.24 4.02 -366.46 -1.47 -10.71 16 22 C 0.09 1.11 11.28 127.77 1.44 2.55 16 23 N -0.31 -8.40 12.53 -47.44 -0.59 -8.99 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.15 5.57 5.82 -2.91 -0.02 5.55 16 32 H 0.42 6.73 7.98 -92.71 -0.74 5.99 16 33 H 0.41 10.57 8.49 -92.71 -0.79 9.78 16 34 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.78 7.50 -2.39 -0.02 0.76 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.78 347.19 2.16 -68.62 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.49 Total: 20.27 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 6.86 Total: 6.41 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -6.19 Total: -115.69 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -70.78 2.16 -68.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273224625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.830 kcal (2) G-P(sol) polarization free energy of solvation -70.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds