Wall clock time and date at job start Tue Mar 31 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47022 * 2 1 4 4 C 1.53002 * 109.47332 * 119.99635 * 2 1 3 5 5 C 1.52993 * 109.47333 * 174.99861 * 4 2 1 6 6 N 1.46906 * 109.47128 * 181.11939 * 5 4 2 7 7 C 1.46898 * 110.99896 * 287.63633 * 6 5 4 8 8 C 1.50694 * 109.47227 * 299.45424 * 7 6 5 9 9 H 1.07994 * 120.00346 * 4.30403 * 8 7 6 10 10 C 1.37884 * 120.00175 * 184.30499 * 8 7 6 11 11 N 1.31521 * 119.99643 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00170 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47404 * 89.99952 * 12 10 8 14 14 H 1.48506 * 109.47002 * 209.99962 * 12 10 8 15 15 H 1.48498 * 109.47115 * 329.99463 * 12 10 8 16 16 C 1.46901 * 110.99887 * 163.67873 * 6 5 4 17 17 C 1.50699 * 109.46835 * 189.99823 * 16 6 5 18 18 C 1.38233 * 120.41159 * 269.97811 * 17 16 6 19 19 N 1.31843 * 120.82642 * 180.02562 * 18 17 16 20 20 C 1.31881 * 121.74578 * 0.02562 * 19 18 17 21 21 C 1.38420 * 120.72751 * 0.02562 * 20 19 18 22 22 F 1.35101 * 120.44195 * 180.02562 * 21 20 19 23 23 C 1.38600 * 120.40111 * 90.00595 * 17 16 6 24 24 H 1.09001 * 109.47130 * 300.00171 * 1 2 3 25 25 H 1.09004 * 109.46735 * 60.00016 * 1 2 3 26 26 H 1.08998 * 109.46959 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47458 * 239.99705 * 2 1 3 28 28 H 1.08997 * 109.46937 * 60.00265 * 3 2 1 29 29 H 1.09003 * 109.46925 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47033 * 299.99374 * 3 2 1 31 31 H 1.09004 * 109.46421 * 54.99751 * 4 2 1 32 32 H 1.09000 * 109.47280 * 295.00465 * 4 2 1 33 33 H 1.09002 * 109.47002 * 61.12722 * 5 4 2 34 34 H 1.08994 * 109.47427 * 301.11907 * 5 4 2 35 35 H 1.09000 * 109.47303 * 59.46110 * 7 6 5 36 36 H 1.09000 * 109.46870 * 179.45076 * 7 6 5 37 37 H 0.96997 * 119.99598 * 179.97438 * 11 10 8 38 38 H 1.09005 * 109.46957 * 70.00750 * 16 6 5 39 39 H 1.08994 * 109.47122 * 310.00453 * 16 6 5 40 40 H 1.08007 * 119.58676 * 0.05107 * 18 17 16 41 41 H 1.08001 * 119.63092 * 180.02562 * 20 19 18 42 42 H 1.07995 * 120.79701 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 7 4.0523 -1.5470 2.3745 7 6 3.9439 -0.7094 3.5763 8 6 4.7775 0.5335 3.3992 9 1 5.2764 0.7198 2.4597 10 6 4.9034 1.4329 4.4368 11 7 4.2954 1.2063 5.5808 12 14 5.9361 2.9738 4.2170 13 1 5.0822 4.0721 3.6975 14 1 6.5143 3.3729 5.5253 15 1 7.0329 2.7014 3.2536 16 6 5.4321 -2.0115 2.1791 17 6 5.8121 -2.9432 3.3010 18 6 6.3906 -2.4492 4.4552 19 7 6.7267 -3.2569 5.4415 20 6 6.5282 -4.5587 5.3706 21 6 5.9546 -5.1265 4.2461 22 9 5.7534 -6.4608 4.1798 23 6 5.5864 -4.3060 3.1879 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6053 -1.7197 1.2952 32 1 1.7516 -0.1582 2.1370 33 1 4.0003 0.1679 1.1622 34 1 3.8540 -1.3768 0.2900 35 1 2.9020 -0.4291 3.7312 36 1 4.3024 -1.2671 4.4415 37 1 4.3843 1.8388 6.3108 38 1 6.1065 -1.1551 2.1739 39 1 5.5068 -2.5385 1.2279 40 1 6.5691 -1.3882 4.5503 41 1 6.8163 -5.1887 6.1992 42 1 5.1361 -4.7198 2.2978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274333233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:29 Heat of formation + Delta-G solvation = -42.726583 kcal Electronic energy + Delta-G solvation = -22271.738287 eV Core-core repulsion = 18971.902581 eV Total energy + Delta-G solvation = -3299.835705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.94190 -41.16417 -39.00436 -36.79344 -34.66194 -33.61466 -32.08367 -29.95320 -28.97083 -27.95459 -26.43982 -25.13853 -24.49727 -23.07606 -21.42551 -20.65772 -18.60830 -18.26361 -17.99350 -17.72434 -16.86875 -16.77639 -16.34279 -16.14808 -15.58645 -15.03921 -14.90454 -14.48049 -14.27778 -14.23030 -14.11669 -13.98418 -13.62487 -13.24012 -13.07074 -12.94746 -12.74932 -12.63913 -12.46438 -12.21194 -12.02057 -11.88249 -11.66888 -11.40673 -11.37193 -11.22781 -10.70917 -10.56926 -10.49249 -9.82677 -8.93940 -8.09105 -6.26680 -0.03668 0.16221 1.37180 1.39848 1.47473 2.39758 2.61961 3.04206 3.16968 3.43873 3.54951 3.77054 3.85340 4.02944 4.05545 4.16419 4.20224 4.35474 4.48484 4.51928 4.78315 4.82629 4.86373 4.87337 4.89149 4.94510 4.98353 5.07071 5.13398 5.22962 5.26708 5.29587 5.37397 5.42153 5.46789 5.59423 5.64974 5.71577 5.83311 6.10913 6.29963 6.57593 6.88369 6.94383 7.43852 8.92500 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.006384 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.132596 B = 4384.588732 C = 6299.154138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.098 4.098 5 C 0.060 3.940 6 N -0.539 5.539 7 C 0.202 3.798 8 C -0.541 4.541 9 H 0.061 0.939 10 C 0.019 3.981 11 N -0.922 5.922 12 Si 0.941 3.059 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.264 1.264 16 C 0.101 3.899 17 C -0.088 4.088 18 C 0.099 3.901 19 N -0.486 5.486 20 C 0.061 3.939 21 C 0.039 3.961 22 F -0.130 7.130 23 C -0.089 4.089 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.034 0.966 34 H 0.079 0.921 35 H -0.002 1.002 36 H 0.011 0.989 37 H 0.261 0.739 38 H 0.043 0.957 39 H 0.101 0.899 40 H 0.143 0.857 41 H 0.188 0.812 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -8.228 -10.421 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.136 4.136 5 C -0.068 4.068 6 N -0.262 5.262 7 C 0.075 3.925 8 C -0.580 4.580 9 H 0.079 0.921 10 C -0.180 4.180 11 N -0.562 5.562 12 Si 0.767 3.233 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.188 1.188 16 C -0.027 4.027 17 C -0.091 4.091 18 C -0.058 4.058 19 N -0.194 5.194 20 C -0.097 4.097 21 C 0.018 3.982 22 F -0.109 7.109 23 C -0.116 4.116 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.016 0.984 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.160 0.840 41 H 0.205 0.795 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.283 -8.262 -9.435 12.545 hybrid contribution 0.483 1.379 -0.081 1.463 sum 0.201 -6.884 -9.516 11.747 Atomic orbital electron populations 1.21800 0.94605 1.01955 1.01586 1.21053 0.96144 0.95776 0.97716 1.21854 1.00856 0.96504 1.01077 1.21478 0.94974 0.99877 0.97287 1.22094 0.95527 0.97156 0.91993 1.62516 1.19111 1.40069 1.04484 1.19404 0.94695 0.89969 0.88406 1.21864 1.30577 1.06954 0.98641 0.92110 1.25644 0.96706 1.00698 0.95002 1.70069 1.44468 1.37493 1.04161 0.85812 0.79448 0.80597 0.77433 1.20412 1.21440 1.18808 1.20904 0.90637 0.95892 0.95263 1.20757 0.96952 0.94251 0.97129 1.22814 0.94337 0.99677 0.88954 1.67745 1.17642 1.04510 1.29495 1.23265 0.97370 0.91650 0.97440 1.18750 1.03664 0.78349 0.97477 1.91499 1.93147 1.29601 1.96663 1.21715 0.98014 0.92401 0.99495 0.94059 0.91429 0.92138 0.89881 0.94701 0.93343 0.91433 0.91912 0.95020 0.94829 0.90287 0.98435 0.97103 0.93010 0.93834 0.88049 0.83954 0.79517 0.81306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.19 71.98 0.66 -2.52 16 2 C -0.09 -2.24 2.92 -10.79 -0.03 -2.28 16 3 C -0.15 -3.98 8.95 71.98 0.64 -3.34 16 4 C -0.10 -3.17 4.71 30.59 0.14 -3.02 16 5 C 0.06 2.03 4.53 86.30 0.39 2.42 16 6 N -0.54 -20.81 4.66 -905.39 -4.21 -25.03 16 7 C 0.20 9.90 4.63 85.56 0.40 10.30 16 8 C -0.54 -27.72 7.20 25.60 0.18 -27.53 16 9 H 0.06 3.03 5.95 -2.91 -0.02 3.01 16 10 C 0.02 1.04 5.46 84.66 0.46 1.50 16 11 N -0.92 -53.69 13.29 21.45 0.28 -53.41 16 12 Si 0.94 42.69 29.54 68.60 2.03 44.71 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 15 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 16 C 0.10 3.42 4.96 85.56 0.42 3.84 16 17 C -0.09 -3.03 4.90 -19.78 -0.10 -3.12 16 18 C 0.10 3.89 9.09 84.69 0.77 4.67 16 19 N -0.49 -18.23 10.36 -195.65 -2.03 -20.25 16 20 C 0.06 1.86 11.17 84.73 0.95 2.81 16 21 C 0.04 1.12 7.34 22.47 0.17 1.28 16 22 F -0.13 -3.42 17.28 44.97 0.78 -2.64 16 23 C -0.09 -2.58 9.85 22.51 0.22 -2.36 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.41 6.59 -2.39 -0.02 1.40 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.03 1.24 6.82 -2.39 -0.02 1.23 16 33 H 0.03 1.29 4.60 -2.39 -0.01 1.28 16 34 H 0.08 2.20 7.80 -2.39 -0.02 2.18 16 35 H 0.00 -0.13 6.72 -2.39 -0.02 -0.15 16 36 H 0.01 0.59 5.94 -2.39 -0.01 0.58 16 37 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.04 1.63 6.56 -2.38 -0.02 1.61 16 39 H 0.10 2.69 7.81 -2.39 -0.02 2.67 16 40 H 0.14 6.39 7.85 -2.91 -0.02 6.37 16 41 H 0.19 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.17 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -60.06 339.41 3.13 -56.93 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.00 Total: 17.04 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 5.28 Total: -17.36 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -5.96 Total: -98.68 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -60.06 3.13 -56.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274333233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.205 kcal (2) G-P(sol) polarization free energy of solvation -60.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds