Wall clock time and date at job start Tue Mar 31 2020 01:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47208 * 2 1 4 4 N 1.30841 * 125.83189 * 270.04680 * 3 2 1 5 5 N 1.40067 * 108.36445 * 179.97438 * 4 3 2 6 6 C 1.46497 * 126.05887 * 180.02562 * 5 4 3 7 7 C 1.35852 * 107.88220 * 359.73914 * 5 4 3 8 8 C 1.35728 * 107.56167 * 0.42061 * 7 5 4 9 9 N 1.40839 * 126.07421 * 179.84583 * 8 7 5 10 10 C 1.34781 * 120.00189 * 359.68524 * 9 8 7 11 11 O 1.21594 * 119.99616 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99812 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99499 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47480 * 34.99526 * 13 12 10 15 15 C 1.50703 * 109.46903 * 154.99929 * 13 12 10 16 16 H 1.07997 * 120.00042 * 35.00322 * 15 13 12 17 17 C 1.37879 * 119.99515 * 214.99743 * 15 13 12 18 18 N 1.31522 * 119.99458 * 184.82745 * 17 15 13 19 19 Si 1.86794 * 120.00148 * 4.83424 * 17 15 13 20 20 H 1.48498 * 109.47316 * 84.85716 * 19 17 15 21 21 H 1.48504 * 109.47080 * 204.85524 * 19 17 15 22 22 H 1.48494 * 109.47509 * 324.85543 * 19 17 15 23 23 C 1.53006 * 109.46823 * 274.99562 * 13 12 10 24 24 C 1.52999 * 109.47012 * 65.69346 * 23 13 12 25 25 H 1.09001 * 109.46935 * 299.99166 * 1 2 3 26 26 H 1.08993 * 109.47410 * 59.99770 * 1 2 3 27 27 H 1.09010 * 109.47215 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46830 * 240.00307 * 2 1 3 29 29 H 1.08999 * 109.47244 * 120.00644 * 2 1 3 30 30 H 1.09001 * 109.47172 * 89.98163 * 6 5 4 31 31 H 1.08997 * 109.47364 * 209.97632 * 6 5 4 32 32 H 1.08999 * 109.47728 * 329.98056 * 6 5 4 33 33 H 1.07998 * 126.21628 * 180.25857 * 7 5 4 34 34 H 0.96998 * 119.99765 * 179.69285 * 9 8 7 35 35 H 0.97001 * 119.99990 * 359.97438 * 12 10 9 36 36 H 0.96994 * 119.99378 * 180.02562 * 18 17 15 37 37 H 1.08999 * 109.47211 * 305.69061 * 23 13 12 38 38 H 1.08997 * 109.47038 * 185.69288 * 23 13 12 39 39 H 1.08999 * 109.47192 * 179.97438 * 24 23 13 40 40 H 1.09000 * 109.46918 * 60.00097 * 24 23 13 41 41 H 1.08997 * 109.47171 * 299.99860 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2869 2.1432 -1.0608 5 7 2.7320 3.4029 -0.6403 6 6 3.1233 4.5141 -1.5112 7 6 2.7304 3.4139 0.7181 8 6 2.3063 2.1945 1.1370 9 7 2.1613 1.7818 2.4758 10 6 2.4616 2.6304 3.4789 11 8 2.8573 3.7524 3.2281 12 7 2.3233 2.2352 4.7600 13 6 2.6492 3.1577 5.8504 14 1 2.3821 4.1735 5.5590 15 6 1.8766 2.7695 7.0847 16 1 1.6827 1.7281 7.2951 17 6 1.4174 3.7439 7.9453 18 7 0.8266 3.4027 9.0697 19 14 1.6341 5.5485 7.5142 20 1 0.5147 5.9871 6.6426 21 1 1.6385 6.3578 8.7593 22 1 2.9215 5.7352 6.7980 23 6 4.1491 3.0894 6.1450 24 6 4.9300 3.6182 4.9403 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.2513 5.1315 -1.7265 31 1 3.8814 5.1175 -1.0119 32 1 3.5285 4.1200 -2.4432 33 1 3.0173 4.2415 1.3499 34 1 1.8454 0.8868 2.6758 35 1 2.0072 1.3402 4.9601 36 1 0.5032 4.0882 9.6750 37 1 4.4348 2.0554 6.3378 38 1 4.3754 3.6981 7.0204 39 1 5.9985 3.5700 5.1503 40 1 4.6443 4.6523 4.7476 41 1 4.7036 3.0095 4.0649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274684758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:34 Heat of formation + Delta-G solvation = 38.839709 kcal Electronic energy + Delta-G solvation = -22398.499833 eV Core-core repulsion = 19122.121070 eV Total energy + Delta-G solvation = -3276.378764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24072 -39.34353 -35.68308 -34.88105 -33.66390 -32.37712 -31.68020 -31.21363 -28.90322 -27.43725 -26.24452 -23.47991 -22.86246 -21.95657 -20.27296 -19.83402 -19.56966 -17.89035 -17.27515 -16.28200 -15.71611 -15.50540 -15.08409 -14.66673 -14.42135 -14.19987 -14.04848 -13.43510 -13.28162 -12.84713 -12.78142 -12.71916 -12.59171 -12.03218 -11.91293 -11.84367 -11.52052 -11.25096 -10.94972 -10.75106 -10.68939 -10.55868 -10.36874 -9.93132 -9.83819 -9.42968 -9.18616 -9.08979 -8.71473 -8.10402 -7.31634 -6.24695 -4.28196 1.98806 2.49274 2.80689 3.24106 3.33908 3.36468 3.41280 3.94467 4.31875 4.46139 4.78605 4.88081 4.97267 5.10643 5.16059 5.24744 5.29498 5.33773 5.47443 5.71539 5.76214 5.90621 6.08075 6.10059 6.11225 6.11468 6.25964 6.36576 6.64596 6.79360 6.94785 6.97200 7.02763 7.22829 7.28659 7.36732 7.54936 7.60252 7.82931 8.27085 8.71088 8.79553 9.19881 9.38439 10.86973 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.004646 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.594934 B = 6025.808687 C = 6560.290246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.056 3.944 4 N -0.290 5.290 5 N -0.383 5.383 6 C 0.112 3.888 7 C 0.036 3.964 8 C 0.027 3.973 9 N -0.666 5.666 10 C 0.696 3.304 11 O -0.592 6.592 12 N -0.715 5.715 13 C 0.254 3.746 14 H 0.051 0.949 15 C -0.530 4.530 16 H 0.078 0.922 17 C 0.082 3.918 18 N -0.888 5.888 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.258 1.258 23 C -0.126 4.126 24 C -0.143 4.143 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.202 0.798 34 H 0.402 0.598 35 H 0.390 0.610 36 H 0.268 0.732 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.027 0.973 40 H 0.049 0.951 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -3.401 -17.584 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.112 4.112 4 N -0.114 5.114 5 N -0.169 5.169 6 C -0.030 4.030 7 C -0.110 4.110 8 C -0.078 4.078 9 N -0.314 5.314 10 C 0.397 3.603 11 O -0.471 6.471 12 N -0.367 5.367 13 C 0.152 3.848 14 H 0.069 0.931 15 C -0.568 4.568 16 H 0.096 0.904 17 C -0.123 4.123 18 N -0.524 5.524 19 Si 0.700 3.300 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.183 1.183 23 C -0.165 4.165 24 C -0.200 4.200 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.218 0.782 34 H 0.236 0.764 35 H 0.223 0.777 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.309 -2.115 -18.850 19.255 hybrid contribution -0.272 0.191 1.019 1.072 sum 3.038 -1.925 -17.831 18.190 Atomic orbital electron populations 1.21730 0.94261 1.01862 1.02570 1.19895 0.96112 0.88784 1.03195 1.22014 1.02690 0.97329 0.89202 1.77097 1.20749 0.91199 1.22329 1.48227 1.52975 1.10773 1.04910 1.21738 1.00891 0.85987 0.94377 1.23129 1.04058 1.00207 0.83627 1.17319 1.12063 0.94469 0.83958 1.42127 1.70468 1.16808 1.02027 1.16077 0.78925 0.84238 0.81109 1.90699 1.53870 1.19769 1.82785 1.45873 1.69167 1.18340 1.03315 1.19066 0.91637 0.90088 0.84056 0.93102 1.21019 1.35454 0.95773 1.04564 0.90354 1.24931 0.93669 0.99095 0.94555 1.69884 1.38309 1.34177 1.10078 0.86896 0.80075 0.85022 0.77973 1.19918 1.21271 1.18271 1.22088 0.97339 1.00149 0.96937 1.21881 0.97503 1.01530 0.99088 0.92288 0.92484 0.91981 0.90300 0.90337 0.91149 0.89508 0.89699 0.78159 0.76357 0.77685 0.92229 0.93075 0.92139 0.95345 0.93160 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.04 -0.42 6.35 -27.89 -0.18 -0.59 16 3 C 0.06 0.78 6.48 -82.27 -0.53 0.25 16 4 N -0.29 -4.31 12.57 33.74 0.42 -3.88 16 5 N -0.38 -5.34 4.04 -67.82 -0.27 -5.62 16 6 C 0.11 1.02 11.48 59.85 0.69 1.70 16 7 C 0.04 0.57 10.38 -16.67 -0.17 0.40 16 8 C 0.03 0.42 6.90 -83.86 -0.58 -0.16 16 9 N -0.67 -10.18 5.48 -14.39 -0.08 -10.26 16 10 C 0.70 13.12 7.14 -86.91 -0.62 12.50 16 11 O -0.59 -12.57 10.63 5.28 0.06 -12.51 16 12 N -0.72 -13.91 5.03 -59.81 -0.30 -14.21 16 13 C 0.25 5.85 1.89 -69.08 -0.13 5.72 16 14 H 0.05 1.28 4.73 -51.93 -0.25 1.04 16 15 C -0.53 -13.90 9.05 -34.44 -0.31 -14.22 16 16 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 19 Si 0.87 21.27 26.99 -169.99 -4.59 16.68 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.26 -6.16 6.82 56.52 0.39 -5.78 16 23 C -0.13 -2.68 5.59 -26.73 -0.15 -2.83 16 24 C -0.14 -2.81 8.53 37.16 0.32 -2.49 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.20 3.41 5.84 -52.49 -0.31 3.11 16 34 H 0.40 4.91 8.22 -40.82 -0.34 4.57 16 35 H 0.39 6.66 8.61 -40.82 -0.35 6.31 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 41 H 0.05 1.02 5.63 -51.93 -0.29 0.73 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -32.14 335.26 -6.48 -38.61 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.14 Total: 9.73 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.40 Total: 1.43 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.54 Total: -59.00 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.06 Total: -12.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.59 Total: 16.68 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.14 -6.48 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274684758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.451 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds