Wall clock time and date at job start Tue Mar 31 2020 02:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46848 * 2 1 4 4 C 1.52999 * 109.46899 * 119.99176 * 2 1 3 5 5 C 1.52999 * 109.47043 * 65.00429 * 4 2 1 6 6 N 1.46898 * 109.47275 * 179.97438 * 5 4 2 7 7 C 1.46893 * 111.00059 * 66.04665 * 6 5 4 8 8 C 1.50704 * 109.46989 * 193.95379 * 7 6 5 9 9 H 1.07994 * 120.00143 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99702 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00279 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99786 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47315 * 90.00064 * 12 10 8 14 14 H 1.48502 * 109.47268 * 209.99978 * 12 10 8 15 15 H 1.48494 * 109.47410 * 329.99980 * 12 10 8 16 16 C 1.46900 * 111.00033 * 190.00431 * 6 5 4 17 17 C 1.50698 * 109.47529 * 170.00230 * 16 6 5 18 18 C 1.38232 * 119.59260 * 94.99287 * 17 16 6 19 19 C 1.38596 * 119.18886 * 180.02562 * 18 17 16 20 20 C 1.38879 * 118.39652 * 0.25621 * 19 18 17 21 21 F 1.35106 * 120.44068 * 179.74732 * 20 19 18 22 22 C 1.38422 * 119.11596 * 359.51901 * 20 19 18 23 23 N 1.31848 * 119.58665 * 275.02118 * 17 16 6 24 24 H 1.09001 * 109.47077 * 60.00525 * 1 2 3 25 25 H 1.09006 * 109.46912 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47355 * 300.00233 * 1 2 3 27 27 H 1.08994 * 109.47228 * 239.99399 * 2 1 3 28 28 H 1.09000 * 109.46964 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46853 * 299.99612 * 3 2 1 30 30 H 1.08995 * 109.47696 * 59.99136 * 3 2 1 31 31 H 1.09004 * 109.47713 * 305.00338 * 4 2 1 32 32 H 1.08998 * 109.47238 * 184.99900 * 4 2 1 33 33 H 1.09004 * 109.46940 * 59.99436 * 5 4 2 34 34 H 1.09000 * 109.47137 * 300.00024 * 5 4 2 35 35 H 1.08998 * 109.46968 * 313.95234 * 7 6 5 36 36 H 1.09004 * 109.47375 * 73.95586 * 7 6 5 37 37 H 0.96996 * 119.99967 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47585 * 49.99627 * 16 6 5 39 39 H 1.09004 * 109.46730 * 289.99704 * 16 6 5 40 40 H 1.08002 * 120.40687 * 0.02599 * 18 17 16 41 41 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 42 42 H 1.07999 * 119.63454 * 180.20814 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6352 -2.1953 1.1882 6 7 2.1254 -2.8878 2.3874 7 6 1.4522 -2.3904 3.5946 8 6 2.2010 -2.8580 4.8160 9 1 3.0884 -3.4636 4.7064 10 6 1.7537 -2.5116 6.0734 11 7 0.6739 -1.7728 6.2068 12 14 2.6822 -3.0905 7.5873 13 1 3.7144 -2.0859 7.9492 14 1 1.7331 -3.2542 8.7176 15 1 3.3374 -4.3914 7.2988 16 6 1.9663 -4.3424 2.2573 17 6 2.6947 -5.0301 3.3832 18 6 2.0039 -5.3862 4.5263 19 6 2.6822 -6.0179 5.5567 20 6 4.0399 -6.2646 5.4002 21 9 4.7425 -6.8732 6.3806 22 6 4.6626 -5.8828 4.2244 23 7 3.9831 -5.2841 3.2658 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9565 0.8898 31 1 1.6053 -0.2615 2.1371 32 1 3.1262 -0.6442 1.2953 33 1 2.0699 -2.6549 0.3005 34 1 0.5489 -2.2723 1.1422 35 1 1.4314 -1.3008 3.5761 36 1 0.4319 -2.7729 3.6254 37 1 0.3590 -1.5295 7.0914 38 1 2.3802 -4.6694 1.3034 39 1 0.9074 -4.5973 2.3005 40 1 0.9485 -5.1749 4.6154 41 1 2.1682 -6.3071 6.4615 42 1 5.7174 -6.0736 4.0923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276259195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:08 Heat of formation + Delta-G solvation = -14.264258 kcal Electronic energy + Delta-G solvation = -22629.079074 eV Core-core repulsion = 19330.477588 eV Total energy + Delta-G solvation = -3298.601486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.41894 -39.68494 -37.44265 -35.38691 -32.75316 -31.70138 -31.09004 -28.49934 -27.43101 -26.97466 -24.77072 -23.13787 -22.94792 -21.60134 -20.11824 -19.42251 -17.03358 -16.76111 -16.55450 -15.69620 -15.34797 -15.07261 -14.74806 -14.54809 -13.90324 -13.55162 -13.43279 -13.25098 -13.19473 -12.72940 -12.54954 -12.30194 -12.17749 -12.01525 -11.95142 -11.40689 -11.18656 -11.18047 -10.97550 -10.70794 -10.65403 -10.39151 -10.28067 -10.07922 -9.74355 -9.35261 -8.95696 -8.87968 -8.58390 -7.84020 -7.31066 -6.16651 -4.09112 1.62983 1.88778 3.23690 3.31982 3.38351 4.19114 4.36001 4.69299 4.89051 4.99715 5.14105 5.20568 5.21819 5.29880 5.35366 5.40672 5.63031 5.68131 5.77888 5.90477 5.92659 5.95808 6.00428 6.06395 6.11555 6.18453 6.28033 6.31892 6.38798 6.44094 6.46136 6.60240 6.70454 6.74893 6.83114 7.15465 7.23093 7.33324 7.71247 8.00855 8.09448 8.43944 8.61073 8.91576 9.46875 10.92396 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.005726 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.376657 B = 4888.482338 C = 5853.758285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.060 3.940 6 N -0.532 5.532 7 C 0.185 3.815 8 C -0.495 4.495 9 H 0.072 0.928 10 C 0.062 3.938 11 N -0.888 5.888 12 Si 0.871 3.129 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.255 1.255 16 C 0.119 3.881 17 C 0.154 3.846 18 C -0.058 4.058 19 C -0.136 4.136 20 C 0.039 3.961 21 F -0.146 7.146 22 C 0.043 3.957 23 N -0.451 5.451 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.038 0.962 36 H -0.008 1.008 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -2.914 -8.428 8.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.148 4.148 5 C -0.068 4.068 6 N -0.256 5.256 7 C 0.060 3.940 8 C -0.533 4.533 9 H 0.090 0.910 10 C -0.141 4.141 11 N -0.527 5.527 12 Si 0.699 3.301 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.179 1.179 16 C -0.010 4.010 17 C 0.013 3.987 18 C -0.078 4.078 19 C -0.162 4.162 20 C 0.017 3.983 21 F -0.124 7.124 22 C -0.114 4.114 23 N -0.160 5.160 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.232 -2.509 -8.965 9.391 hybrid contribution -0.701 -0.490 2.183 2.344 sum 0.531 -2.999 -6.782 7.435 Atomic orbital electron populations 1.21891 0.95663 1.01760 1.01210 1.21092 0.95614 0.95976 0.98703 1.21820 1.00878 0.96276 1.01282 1.21647 1.01460 0.94500 0.97194 1.22037 0.96871 0.94628 0.93242 1.62077 1.58804 1.01340 1.03415 1.19895 0.91863 0.96524 0.85713 1.21524 1.10880 1.31063 0.89875 0.90984 1.24902 0.94998 0.95227 0.98928 1.69950 1.22757 1.36473 1.23487 0.86910 0.80068 0.80419 0.82746 1.20722 1.21287 1.17934 1.20683 0.96071 0.89220 0.95037 1.20768 0.89414 0.93580 0.94944 1.21636 1.02001 0.92206 0.91986 1.21287 0.92723 1.01810 1.00363 1.18736 0.91115 1.00500 0.87921 1.91429 1.78756 1.81035 1.61226 1.22432 1.00263 0.99536 0.89145 1.67391 1.08141 1.10661 1.29812 0.93463 0.92542 0.92628 0.91729 0.92816 0.93300 0.92684 0.91151 0.91492 0.92266 0.95677 0.94406 0.99000 0.92812 0.90758 0.94283 0.84419 0.85128 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 2 C -0.09 -1.23 2.92 -90.62 -0.26 -1.49 16 3 C -0.15 -1.72 9.19 37.16 0.34 -1.38 16 4 C -0.11 -1.78 4.64 -26.73 -0.12 -1.91 16 5 C 0.06 1.02 4.71 -3.83 -0.02 1.00 16 6 N -0.53 -10.81 4.56 -237.52 -1.08 -11.89 16 7 C 0.19 4.42 4.55 -4.98 -0.02 4.40 16 8 C -0.50 -12.71 5.77 -34.44 -0.20 -12.91 16 9 H 0.07 1.89 4.92 -52.49 -0.26 1.63 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 12 Si 0.87 20.81 28.78 -169.99 -4.89 15.92 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.26 -5.87 5.24 56.52 0.30 -5.57 16 16 C 0.12 2.19 5.28 -4.98 -0.03 2.16 16 17 C 0.15 3.04 4.01 -82.59 -0.33 2.71 16 18 C -0.06 -1.12 6.30 -39.45 -0.25 -1.37 16 19 C -0.14 -2.59 7.77 -39.21 -0.30 -2.89 16 20 C 0.04 0.74 7.09 -39.28 -0.28 0.46 16 21 F -0.15 -2.68 17.28 2.25 0.04 -2.64 16 22 C 0.04 0.79 11.17 -17.47 -0.20 0.59 16 23 N -0.45 -8.99 10.15 -9.42 -0.10 -9.08 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.30 6.31 -51.93 -0.33 0.98 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 34 H 0.03 0.42 6.54 -51.93 -0.34 0.08 16 35 H 0.04 0.98 5.98 -51.93 -0.31 0.67 16 36 H -0.01 -0.20 7.99 -51.93 -0.41 -0.61 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 39 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 40 H 0.14 2.66 7.99 -52.49 -0.42 2.24 16 41 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 42 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 332.81 15.07 5.02 5.02 Total: -1.00 -28.00 332.81 -8.41 -36.40 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.69 Total: 0.91 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.44 Total: -10.59 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.44 Total: -45.01 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.89 Total: 15.92 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.00 -8.41 -36.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276259195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.140 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds