Wall clock time and date at job start Tue Mar 31 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46848 * 2 1 4 4 C 1.52999 * 109.46899 * 119.99176 * 2 1 3 5 5 C 1.52999 * 109.47043 * 65.00429 * 4 2 1 6 6 N 1.46898 * 109.47275 * 179.97438 * 5 4 2 7 7 C 1.46893 * 111.00059 * 66.04665 * 6 5 4 8 8 C 1.50704 * 109.46989 * 193.95379 * 7 6 5 9 9 H 1.07994 * 120.00143 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99702 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00279 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99786 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47315 * 90.00064 * 12 10 8 14 14 H 1.48502 * 109.47268 * 209.99978 * 12 10 8 15 15 H 1.48494 * 109.47410 * 329.99980 * 12 10 8 16 16 C 1.46900 * 111.00033 * 190.00431 * 6 5 4 17 17 C 1.50698 * 109.47529 * 170.00230 * 16 6 5 18 18 C 1.38232 * 119.59260 * 94.99287 * 17 16 6 19 19 C 1.38596 * 119.18886 * 180.02562 * 18 17 16 20 20 C 1.38879 * 118.39652 * 0.25621 * 19 18 17 21 21 F 1.35106 * 120.44068 * 179.74732 * 20 19 18 22 22 C 1.38422 * 119.11596 * 359.51901 * 20 19 18 23 23 N 1.31848 * 119.58665 * 275.02118 * 17 16 6 24 24 H 1.09001 * 109.47077 * 60.00525 * 1 2 3 25 25 H 1.09006 * 109.46912 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47355 * 300.00233 * 1 2 3 27 27 H 1.08994 * 109.47228 * 239.99399 * 2 1 3 28 28 H 1.09000 * 109.46964 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46853 * 299.99612 * 3 2 1 30 30 H 1.08995 * 109.47696 * 59.99136 * 3 2 1 31 31 H 1.09004 * 109.47713 * 305.00338 * 4 2 1 32 32 H 1.08998 * 109.47238 * 184.99900 * 4 2 1 33 33 H 1.09004 * 109.46940 * 59.99436 * 5 4 2 34 34 H 1.09000 * 109.47137 * 300.00024 * 5 4 2 35 35 H 1.08998 * 109.46968 * 313.95234 * 7 6 5 36 36 H 1.09004 * 109.47375 * 73.95586 * 7 6 5 37 37 H 0.96996 * 119.99967 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47585 * 49.99627 * 16 6 5 39 39 H 1.09004 * 109.46730 * 289.99704 * 16 6 5 40 40 H 1.08002 * 120.40687 * 0.02599 * 18 17 16 41 41 H 1.08002 * 120.79700 * 179.97438 * 19 18 17 42 42 H 1.07999 * 119.63454 * 180.20814 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6352 -2.1953 1.1882 6 7 2.1254 -2.8878 2.3874 7 6 1.4522 -2.3904 3.5946 8 6 2.2010 -2.8580 4.8160 9 1 3.0884 -3.4636 4.7064 10 6 1.7537 -2.5116 6.0734 11 7 0.6739 -1.7728 6.2068 12 14 2.6822 -3.0905 7.5873 13 1 3.7144 -2.0859 7.9492 14 1 1.7331 -3.2542 8.7176 15 1 3.3374 -4.3914 7.2988 16 6 1.9663 -4.3424 2.2573 17 6 2.6947 -5.0301 3.3832 18 6 2.0039 -5.3862 4.5263 19 6 2.6822 -6.0179 5.5567 20 6 4.0399 -6.2646 5.4002 21 9 4.7425 -6.8732 6.3806 22 6 4.6626 -5.8828 4.2244 23 7 3.9831 -5.2841 3.2658 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9565 0.8898 31 1 1.6053 -0.2615 2.1371 32 1 3.1262 -0.6442 1.2953 33 1 2.0699 -2.6549 0.3005 34 1 0.5489 -2.2723 1.1422 35 1 1.4314 -1.3008 3.5761 36 1 0.4319 -2.7729 3.6254 37 1 0.3590 -1.5295 7.0914 38 1 2.3802 -4.6694 1.3034 39 1 0.9074 -4.5973 2.3005 40 1 0.9485 -5.1749 4.6154 41 1 2.1682 -6.3071 6.4615 42 1 5.7174 -6.0736 4.0923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276259195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:07 Heat of formation + Delta-G solvation = -30.090907 kcal Electronic energy + Delta-G solvation = -22629.765369 eV Core-core repulsion = 19330.477588 eV Total energy + Delta-G solvation = -3299.287781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.88699 -41.21304 -38.85581 -36.70384 -34.68440 -33.25608 -32.53047 -30.02800 -29.13509 -27.96754 -26.30678 -24.73410 -24.60863 -23.02803 -21.62036 -20.65705 -18.69454 -18.52165 -18.06124 -17.24129 -16.85655 -16.51230 -16.29152 -16.06754 -15.42518 -14.94241 -14.83599 -14.75235 -14.52895 -14.19128 -14.01651 -13.90921 -13.72799 -13.51252 -13.07801 -13.01328 -12.86329 -12.49811 -12.48195 -12.41152 -12.10767 -11.72005 -11.52392 -11.42963 -11.25745 -11.21628 -10.61123 -10.50578 -10.39321 -9.42414 -8.94147 -8.19467 -6.16860 0.11576 0.37551 1.31531 1.38726 1.45746 2.36315 2.71573 3.16809 3.21076 3.46591 3.52368 3.87063 3.92861 4.00943 4.09508 4.14201 4.19393 4.42615 4.49542 4.58280 4.73541 4.75318 4.80391 4.85575 4.90541 4.96552 5.01233 5.07538 5.09107 5.15223 5.21343 5.24948 5.30554 5.37082 5.38061 5.54550 5.61412 5.70348 5.83567 6.11976 6.39648 6.67517 6.90856 7.09155 7.43723 8.90267 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.005726 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.376657 B = 4888.482338 C = 5853.758285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.104 4.104 5 C 0.061 3.939 6 N -0.543 5.543 7 C 0.203 3.797 8 C -0.491 4.491 9 H 0.069 0.931 10 C 0.022 3.978 11 N -0.924 5.924 12 Si 0.917 3.083 13 H -0.292 1.292 14 H -0.286 1.286 15 H -0.241 1.241 16 C 0.117 3.883 17 C 0.144 3.856 18 C -0.069 4.069 19 C -0.136 4.136 20 C 0.030 3.970 21 F -0.141 7.141 22 C 0.049 3.951 23 N -0.463 5.463 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.011 0.989 36 H -0.029 1.029 37 H 0.260 0.740 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -3.827 -9.747 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.142 4.142 5 C -0.067 4.067 6 N -0.268 5.268 7 C 0.077 3.923 8 C -0.530 4.530 9 H 0.087 0.913 10 C -0.177 4.177 11 N -0.565 5.565 12 Si 0.743 3.257 13 H -0.219 1.219 14 H -0.212 1.212 15 H -0.164 1.164 16 C -0.011 4.011 17 C 0.004 3.996 18 C -0.090 4.090 19 C -0.162 4.162 20 C 0.008 3.992 21 F -0.120 7.120 22 C -0.108 4.108 23 N -0.172 5.172 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.046 0.954 35 H 0.029 0.971 36 H -0.011 1.011 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.210 -3.440 -10.305 11.087 hybrid contribution -0.935 -0.287 2.532 2.715 sum 1.274 -3.727 -7.773 8.714 Atomic orbital electron populations 1.21875 0.95251 1.01710 1.01513 1.21064 0.95894 0.96381 0.97434 1.21812 1.00999 0.95606 1.01728 1.21580 1.00530 0.94453 0.97655 1.22144 0.97199 0.94745 0.92575 1.62010 1.58610 1.02749 1.03384 1.19517 0.90833 0.94738 0.87180 1.21659 1.10427 1.30452 0.90436 0.91281 1.25447 0.95579 0.95580 1.01085 1.70045 1.24378 1.38358 1.23703 0.86198 0.78838 0.80255 0.80372 1.21882 1.21174 1.16441 1.20787 0.96721 0.87855 0.95769 1.20995 0.89666 0.93571 0.95359 1.21660 1.01932 0.92984 0.92391 1.21532 0.93090 1.00925 1.00616 1.18822 0.91138 1.00875 0.88353 1.91442 1.78588 1.80949 1.61036 1.22945 1.01518 0.97894 0.88440 1.67456 1.08184 1.11153 1.30442 0.91198 0.92787 0.94275 0.89890 0.92661 0.91162 0.93933 0.94455 0.92563 0.89707 0.95403 0.97074 1.01137 0.93046 0.88519 0.93427 0.84901 0.83855 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.95 71.98 0.64 -2.80 16 2 C -0.09 -2.16 2.92 -10.79 -0.03 -2.20 16 3 C -0.14 -3.22 9.19 71.98 0.66 -2.56 16 4 C -0.10 -3.36 4.64 30.59 0.14 -3.22 16 5 C 0.06 1.99 4.71 86.30 0.41 2.39 16 6 N -0.54 -21.81 4.56 -905.37 -4.13 -25.94 16 7 C 0.20 9.92 4.55 85.56 0.39 10.31 16 8 C -0.49 -25.38 5.77 25.60 0.15 -25.24 16 9 H 0.07 3.58 4.92 -2.91 -0.01 3.57 16 10 C 0.02 1.18 5.46 84.66 0.46 1.65 16 11 N -0.92 -52.80 13.29 21.45 0.28 -52.51 16 12 Si 0.92 42.72 28.78 68.60 1.97 44.69 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 14 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 15 H -0.24 -10.50 5.24 99.48 0.52 -9.98 16 16 C 0.12 4.15 5.28 85.56 0.45 4.60 16 17 C 0.14 5.50 4.01 42.55 0.17 5.67 16 18 C -0.07 -2.64 6.30 22.35 0.14 -2.49 16 19 C -0.14 -4.94 7.77 22.51 0.17 -4.76 16 20 C 0.03 1.06 7.09 22.47 0.16 1.22 16 21 F -0.14 -4.83 17.28 44.97 0.78 -4.06 16 22 C 0.05 1.68 11.17 84.73 0.95 2.62 16 23 N -0.46 -17.49 10.15 -183.71 -1.87 -19.35 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.28 6.56 -2.38 -0.02 1.27 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 1.44 6.31 -2.39 -0.02 1.42 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.35 7.93 -2.39 -0.02 2.34 16 34 H 0.03 0.90 6.54 -2.39 -0.02 0.89 16 35 H 0.01 0.61 5.98 -2.39 -0.01 0.59 16 36 H -0.03 -1.52 7.99 -2.38 -0.02 -1.54 16 37 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.10 2.98 7.93 -2.39 -0.02 2.97 16 39 H 0.05 1.61 7.91 -2.38 -0.02 1.59 16 40 H 0.13 5.15 7.99 -2.91 -0.02 5.12 16 41 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 42 H 0.18 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -59.60 332.81 2.72 -56.89 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.81 Total: 15.08 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.87 Total: -14.81 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -5.71 Total: -97.80 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.78 Total: -4.06 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.97 Total: 44.69 kcal Total: -59.60 2.72 -56.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276259195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.797 kcal (2) G-P(sol) polarization free energy of solvation -59.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds