Wall clock time and date at job start Tue Mar 31 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28519 * 124.44184 * 2 1 4 4 C 1.31130 * 109.05950 * 179.97438 * 3 2 1 5 5 C 1.40925 * 105.77630 * 0.02562 * 4 3 2 6 6 C 1.47798 * 127.23750 * 179.97438 * 5 4 3 7 7 O 1.21557 * 119.99698 * 5.53336 * 6 5 4 8 8 N 1.34775 * 119.99941 * 185.26565 * 6 5 4 9 9 C 1.46501 * 119.99911 * 176.29693 * 8 6 5 10 10 C 1.50703 * 109.46876 * 89.99457 * 9 8 6 11 11 H 1.07996 * 120.00095 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99621 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00187 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99866 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47438 * 90.00204 * 14 12 10 16 16 H 1.48499 * 109.47232 * 210.00842 * 14 12 10 17 17 H 1.48506 * 109.46967 * 330.00241 * 14 12 10 18 18 C 1.46491 * 119.99903 * 356.29718 * 8 6 5 19 19 C 1.53002 * 109.47492 * 94.33315 * 18 8 6 20 20 C 1.53003 * 109.46925 * 61.04541 * 19 18 8 21 21 C 1.52995 * 109.47253 * 181.04455 * 19 18 8 22 22 C 1.52998 * 109.46820 * 301.04858 * 19 18 8 23 23 N 1.28582 * 124.44532 * 180.31201 * 2 1 3 24 24 H 1.09003 * 109.47526 * 90.02401 * 1 2 3 25 25 H 1.09007 * 109.47168 * 210.02219 * 1 2 3 26 26 H 1.08999 * 109.47394 * 330.02025 * 1 2 3 27 27 H 1.07999 * 127.10949 * 180.02562 * 4 3 2 28 28 H 1.08999 * 109.47021 * 209.99791 * 9 8 6 29 29 H 1.09007 * 109.46914 * 330.00112 * 9 8 6 30 30 H 0.97002 * 120.00054 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47032 * 214.33399 * 18 8 6 32 32 H 1.09003 * 109.47548 * 334.32946 * 18 8 6 33 33 H 1.09007 * 109.47080 * 60.00008 * 20 19 18 34 34 H 1.09001 * 109.46898 * 180.02562 * 20 19 18 35 35 H 1.08998 * 109.47255 * 300.00268 * 20 19 18 36 36 H 1.09001 * 109.47424 * 60.00029 * 21 19 18 37 37 H 1.09001 * 109.47256 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.47798 * 300.00312 * 21 19 18 39 39 H 1.08996 * 109.47438 * 51.97102 * 22 19 18 40 40 H 1.08998 * 109.46874 * 171.97640 * 22 19 18 41 41 H 1.09001 * 109.47179 * 291.96871 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7121 0.0006 5 6 3.4659 -0.6972 0.0003 6 6 4.6487 -1.5834 0.0002 7 8 5.7633 -1.1093 0.1018 8 7 4.4910 -2.9176 -0.1072 9 6 5.6653 -3.7897 -0.1890 10 6 6.0809 -4.2041 1.1991 11 1 5.5256 -3.8533 2.0563 12 6 7.1695 -5.0319 1.3744 13 7 7.8454 -5.4595 0.3304 14 14 7.6843 -5.5462 3.0948 15 1 6.9834 -6.8013 3.4669 16 1 9.1519 -5.7707 3.1261 17 1 7.3269 -4.4750 4.0594 18 6 3.1454 -3.4957 -0.1420 19 6 2.7069 -3.6798 -1.5962 20 6 3.6687 -4.6383 -2.3014 21 6 1.2914 -4.2593 -1.6326 22 6 2.7223 -2.3260 -2.3088 23 7 2.1923 -1.0604 -0.0058 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8901 0.5135 27 1 4.3129 1.3696 0.0011 28 1 5.4198 -4.6757 -0.7745 29 1 6.4840 -3.2527 -0.6682 30 1 8.6115 -6.0416 0.4538 31 1 3.1524 -4.4629 0.3606 32 1 2.4496 -2.8275 0.3655 33 1 3.6577 -5.6028 -1.7937 34 1 3.3565 -4.7691 -3.3376 35 1 4.6771 -4.2255 -2.2755 36 1 0.6062 -3.5765 -1.1302 37 1 0.9788 -4.3901 -2.6686 38 1 1.2804 -5.2238 -1.1249 39 1 3.6908 -1.8484 -2.1608 40 1 2.5495 -2.4745 -3.3747 41 1 1.9374 -1.6905 -1.8986 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284033788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:58 Heat of formation + Delta-G solvation = 90.414859 kcal Electronic energy + Delta-G solvation = -23496.790777 eV Core-core repulsion = 20222.648479 eV Total energy + Delta-G solvation = -3274.142298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.51518 -39.24757 -36.94498 -33.88413 -33.65726 -32.74828 -32.09716 -28.49657 -27.41731 -26.98599 -26.71459 -25.51777 -24.00042 -22.11237 -21.80181 -19.24062 -18.61214 -17.05929 -16.97483 -16.50012 -16.12336 -15.27740 -14.77753 -14.65826 -14.27498 -13.90752 -13.66266 -13.48256 -13.12064 -12.97593 -12.62426 -12.37205 -12.13889 -11.88029 -11.74801 -11.40554 -11.32662 -11.15720 -10.94452 -10.81919 -10.74873 -10.45808 -10.21125 -10.14429 -9.98087 -9.74268 -9.49679 -9.20614 -9.18406 -8.37570 -7.57746 -6.00138 -4.03862 1.61249 2.18909 2.26669 3.33275 3.39920 3.44785 3.82401 3.93737 4.15214 4.49110 4.81191 4.84647 5.06382 5.10983 5.19428 5.20255 5.28590 5.34231 5.48429 5.82704 5.84077 5.87388 5.92124 6.05821 6.08610 6.18278 6.20800 6.31016 6.35490 6.45693 6.54331 6.70343 6.79633 6.89595 7.15243 7.45545 7.58911 7.96090 8.25266 8.28079 8.45150 8.91008 9.07387 9.60416 11.07736 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018882 B = 0.006058 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.567329 B = 4620.649655 C = 5357.372546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.160 5.160 3 N -0.298 5.298 4 C 0.027 3.973 5 C -0.027 4.027 6 C 0.590 3.410 7 O -0.529 6.529 8 N -0.574 5.574 9 C 0.240 3.760 10 C -0.524 4.524 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.106 3.894 19 C -0.077 4.077 20 C -0.147 4.147 21 C -0.132 4.132 22 C -0.136 4.136 23 N -0.242 5.242 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.204 0.796 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.191 6.919 -3.878 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.061 5.061 3 N -0.139 5.139 4 C -0.157 4.157 5 C -0.190 4.190 6 C 0.373 3.627 7 O -0.405 6.405 8 N -0.303 5.303 9 C 0.121 3.879 10 C -0.563 4.563 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.019 4.019 19 C -0.078 4.078 20 C -0.204 4.204 21 C -0.190 4.190 22 C -0.194 4.194 23 N -0.090 5.090 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.221 0.779 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.781 7.040 -3.872 19.512 hybrid contribution 1.159 -0.385 0.891 1.511 sum -16.623 6.655 -2.981 18.152 Atomic orbital electron populations 1.22126 0.70578 1.05802 1.04853 1.48165 1.08907 0.99795 1.49279 1.73917 1.03934 1.15783 1.20226 1.24768 0.94033 0.94046 1.02813 1.23558 0.91558 0.94874 1.09020 1.16752 0.85482 0.82008 0.78480 1.90789 1.23979 1.74956 1.50730 1.48039 1.08573 1.05086 1.68608 1.19561 0.81798 0.88887 0.97641 1.21443 1.13148 1.28969 0.92712 0.92473 1.24901 0.96002 0.96061 0.97035 1.69926 1.19726 1.34580 1.29191 0.86521 0.77736 0.78707 0.84608 1.20719 1.21126 1.19925 1.22013 0.84291 1.00267 0.95303 1.20827 0.95164 0.95407 0.96414 1.22077 1.00403 0.99128 0.98757 1.21745 0.95677 1.00517 1.01041 1.22094 1.01536 0.96984 0.98749 1.74625 1.03374 1.13843 1.17141 0.89309 0.87897 0.88051 0.77911 0.93382 0.94003 0.92776 0.90616 0.88121 0.92478 0.93866 0.91071 0.92945 0.93176 0.92693 0.92910 0.93958 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.71 11.55 59.85 0.69 1.41 16 2 N -0.16 -2.00 4.33 -16.63 -0.07 -2.08 16 3 N -0.30 -4.19 12.01 30.90 0.37 -3.82 16 4 C 0.03 0.41 12.05 -16.84 -0.20 0.21 16 5 C -0.03 -0.48 5.42 -82.68 -0.45 -0.93 16 6 C 0.59 12.90 6.33 -12.35 -0.08 12.82 16 7 O -0.53 -13.49 16.57 5.32 0.09 -13.40 16 8 N -0.57 -12.45 1.97 -176.19 -0.35 -12.80 16 9 C 0.24 6.20 4.08 -5.19 -0.02 6.18 16 10 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 14 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 C 0.11 1.87 4.47 -4.05 -0.02 1.85 16 19 C -0.08 -1.16 0.84 -154.51 -0.13 -1.29 16 20 C -0.15 -2.40 7.18 37.16 0.27 -2.14 16 21 C -0.13 -1.58 8.47 37.15 0.31 -1.27 16 22 C -0.14 -2.05 6.94 37.16 0.26 -1.79 16 23 N -0.24 -3.61 5.68 33.42 0.19 -3.42 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.20 2.75 8.06 -52.49 -0.42 2.33 16 28 H 0.05 1.23 5.52 -51.93 -0.29 0.95 16 29 H 0.04 1.22 7.48 -51.93 -0.39 0.83 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 32 H 0.10 1.67 4.78 -51.93 -0.25 1.43 16 33 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.37 5.64 -51.93 -0.29 1.07 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.93 5.57 -51.93 -0.29 0.64 16 40 H 0.04 0.58 8.13 -51.93 -0.42 0.16 16 41 H 0.06 0.80 5.72 -51.93 -0.30 0.50 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -33.53 327.09 -4.91 -38.44 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.99 Total: -0.66 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 0.21 Total: 1.51 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.88 Total: -47.81 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.53 -4.91 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284033788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.850 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds