Wall clock time and date at job start Tue Mar 31 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99805 * 2 1 4 4 H 1.08998 * 110.64745 * 328.30855 * 3 2 1 5 5 C 1.54593 * 110.87716 * 205.04018 * 3 2 1 6 6 C 1.53995 * 105.13896 * 219.61499 * 5 3 2 7 7 H 1.09003 * 110.07928 * 118.22500 * 6 5 3 8 8 C 1.50693 * 109.91763 * 239.42304 * 6 5 3 9 9 N 1.30835 * 125.96022 * 92.61808 * 8 6 5 10 10 C 1.33246 * 109.82742 * 179.97438 * 9 8 6 11 11 C 1.50706 * 125.52181 * 180.02562 * 10 9 8 12 12 N 1.30713 * 108.94934 * 0.26254 * 10 9 8 13 13 N 1.34429 * 125.96448 * 272.59559 * 8 6 5 14 14 H 0.97001 * 126.82180 * 0.02562 * 13 8 6 15 15 N 1.47899 * 107.05811 * 358.78041 * 6 5 3 16 16 C 1.46902 * 110.99541 * 145.84189 * 15 6 5 17 17 C 1.52999 * 109.46713 * 169.99708 * 16 15 6 18 18 C 1.50705 * 109.47157 * 180.02562 * 17 16 15 19 19 H 1.07994 * 119.99942 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99992 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99978 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99991 * 0.02562 * 20 18 17 23 23 H 1.48509 * 109.47066 * 90.00029 * 22 20 18 24 24 H 1.48500 * 109.47071 * 209.99694 * 22 20 18 25 25 H 1.48499 * 109.47385 * 329.99764 * 22 20 18 26 26 C 1.48530 * 105.82381 * 25.32795 * 15 6 5 27 27 H 1.09005 * 109.47007 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47343 * 299.99500 * 1 2 3 29 29 H 1.08999 * 109.46981 * 59.99836 * 1 2 3 30 30 H 1.08999 * 110.30268 * 100.70200 * 5 3 2 31 31 H 1.08993 * 110.31038 * 338.53677 * 5 3 2 32 32 H 1.08999 * 109.47015 * 90.00246 * 11 10 9 33 33 H 1.09000 * 109.46646 * 209.99399 * 11 10 9 34 34 H 1.09000 * 109.47248 * 330.00116 * 11 10 9 35 35 H 1.08992 * 109.47406 * 289.99465 * 16 15 6 36 36 H 1.08999 * 109.47305 * 50.00318 * 16 15 6 37 37 H 1.09002 * 109.47490 * 300.00224 * 17 16 15 38 38 H 1.09003 * 109.47340 * 59.99871 * 17 16 15 39 39 H 0.97000 * 120.00408 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.66326 * 79.22343 * 26 15 6 41 41 H 1.08992 * 110.67129 * 202.19038 * 26 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3737 2.0096 -0.5358 5 6 3.4298 1.2766 -0.6114 6 6 4.2630 2.2337 0.2611 7 1 5.0750 1.6894 0.7433 8 6 4.8237 3.3454 -0.5879 9 7 4.2666 4.5114 -0.7927 10 6 5.0378 5.2463 -1.5931 11 6 4.7338 6.6476 -2.0571 12 7 6.0984 4.5531 -1.9145 13 7 5.9837 3.3123 -1.2664 14 1 6.6144 2.5763 -1.3041 15 7 3.3526 2.7914 1.2845 16 6 4.0596 3.0139 2.5529 17 6 3.1652 3.8143 3.5016 18 6 3.8907 4.0432 4.8026 19 1 4.8896 3.6561 4.9392 20 6 3.2787 4.7459 5.8188 21 7 3.9116 4.9452 6.9543 22 14 1.5501 5.4136 5.5834 23 1 0.5622 4.3974 6.0270 24 1 1.3833 6.6504 6.3882 25 1 1.3305 5.7239 4.1479 26 6 2.2667 1.7914 1.4488 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.4049 1.6294 -1.6424 31 1 3.8409 0.2682 -0.5656 32 1 5.1512 7.3634 -1.3490 33 1 5.1763 6.8088 -3.0401 34 1 3.6540 6.7839 -2.1178 35 1 4.3028 2.0533 3.0067 36 1 4.9781 3.5696 2.3642 37 1 2.9219 4.7751 3.0478 38 1 2.2465 3.2588 3.6903 39 1 3.4810 5.4392 7.6694 40 1 2.5966 0.9653 2.0788 41 1 1.3737 2.2579 1.8646 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284716836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:43 Heat of formation + Delta-G solvation = 21.138753 kcal Electronic energy + Delta-G solvation = -22331.292725 eV Core-core repulsion = 19054.146390 eV Total energy + Delta-G solvation = -3277.146335 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -43.16863 -40.51298 -38.08812 -35.57082 -34.39591 -33.59139 -32.67567 -30.65147 -30.14867 -28.70381 -27.44094 -26.12162 -24.02582 -22.74464 -21.92433 -21.57370 -20.99252 -19.09739 -18.86356 -17.80543 -17.19295 -16.67095 -16.33902 -16.22435 -15.84118 -15.39420 -15.09497 -14.93169 -14.56758 -14.42945 -14.09862 -13.92403 -13.58138 -13.45654 -13.39398 -13.08403 -12.87288 -12.70466 -12.64003 -12.32832 -11.87418 -11.77303 -11.71943 -11.61624 -11.41098 -11.00895 -10.91869 -10.76580 -10.59616 -10.41586 -9.47470 -8.30627 -6.34685 0.54568 1.34778 1.38386 1.51949 1.60542 1.90007 2.36433 2.54732 2.96912 3.05353 3.12429 3.47677 3.58611 3.75825 3.79799 4.12339 4.14230 4.30111 4.37611 4.43782 4.55916 4.59702 4.70956 4.75733 4.76572 4.82203 4.88491 4.90801 4.92356 4.94781 4.98814 5.22232 5.30521 5.39515 5.53844 5.62356 5.78804 5.98015 6.16865 6.24872 6.27499 6.72301 7.18210 7.30302 8.85966 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.006047 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.495232 B = 4629.233441 C = 6269.707255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.095 3.905 4 H 0.082 0.918 5 C -0.102 4.102 6 C 0.142 3.858 7 H 0.097 0.903 8 C 0.299 3.701 9 N -0.538 5.538 10 C 0.206 3.794 11 C -0.057 4.057 12 N -0.338 5.338 13 N -0.475 5.475 14 H 0.452 0.548 15 N -0.503 5.503 16 C 0.081 3.919 17 C 0.007 3.993 18 C -0.532 4.532 19 H 0.033 0.967 20 C 0.009 3.991 21 N -0.950 5.950 22 Si 0.948 3.052 23 H -0.262 1.262 24 H -0.284 1.284 25 H -0.251 1.251 26 C 0.018 3.982 27 H 0.102 0.898 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.035 0.965 36 H 0.049 0.951 37 H 0.015 0.985 38 H 0.020 0.980 39 H 0.267 0.733 40 H 0.056 0.944 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.869 -7.891 -20.846 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C 0.037 3.963 4 H 0.100 0.900 5 C -0.141 4.141 6 C 0.030 3.970 7 H 0.114 0.886 8 C 0.019 3.981 9 N -0.267 5.267 10 C -0.077 4.077 11 C -0.116 4.116 12 N -0.169 5.169 13 N -0.195 5.195 14 H 0.300 0.700 15 N -0.228 5.228 16 C -0.046 4.046 17 C -0.031 4.031 18 C -0.571 4.571 19 H 0.051 0.949 20 C -0.188 4.188 21 N -0.590 5.590 22 Si 0.771 3.229 23 H -0.187 1.187 24 H -0.209 1.209 25 H -0.175 1.175 26 C -0.110 4.110 27 H 0.120 0.880 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.742 -7.045 -21.187 22.639 hybrid contribution 0.293 -0.556 1.142 1.304 sum -3.449 -7.601 -20.044 21.713 Atomic orbital electron populations 1.22994 0.79442 1.03998 1.00814 1.87852 1.21501 1.26864 1.94886 1.22866 0.94878 0.84625 0.93974 0.90016 1.22379 0.93267 0.99718 0.98752 1.20831 0.96486 0.88200 0.91504 0.88571 1.24290 0.84780 0.95140 0.93863 1.70478 1.32969 1.03404 1.19826 1.25104 0.88720 0.99570 0.94261 1.20224 1.04102 0.84882 1.02383 1.77869 1.23757 0.92930 1.22365 1.47890 1.19008 1.14683 1.37905 0.69991 1.64318 1.09713 1.41575 1.07180 1.21968 0.96266 0.98348 0.88038 1.19316 0.95398 0.95850 0.92558 1.21389 1.01951 1.34774 0.98942 0.94908 1.25931 1.02579 0.95845 0.94479 1.70055 1.40183 1.42835 1.05958 0.85684 0.79496 0.78275 0.79408 1.18728 1.20930 1.17472 1.23712 0.95550 0.93646 0.98091 0.87959 0.93840 0.92830 0.89582 0.87110 0.89430 0.88332 0.88942 0.94635 0.93212 0.96621 0.96219 0.92441 0.92561 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.88 113.37 1.23 1.62 16 2 O -0.39 -8.54 10.45 -148.98 -1.56 -10.10 16 3 C 0.10 2.17 3.51 31.80 0.11 2.28 16 4 H 0.08 1.85 7.88 -2.39 -0.02 1.83 16 5 C -0.10 -2.04 6.33 31.47 0.20 -1.84 16 6 C 0.14 3.60 2.98 44.31 0.13 3.73 16 7 H 0.10 2.13 7.77 -2.39 -0.02 2.11 16 8 C 0.30 8.45 6.99 138.22 0.97 9.42 16 9 N -0.54 -17.87 10.99 -179.72 -1.97 -19.85 16 10 C 0.21 6.08 8.14 138.63 1.13 7.21 16 11 C -0.06 -1.20 10.51 71.24 0.75 -0.45 16 12 N -0.34 -9.70 12.80 -51.33 -0.66 -10.36 16 13 N -0.48 -11.56 7.45 -50.71 -0.38 -11.94 16 14 H 0.45 7.41 8.96 -213.09 -1.91 5.50 16 15 N -0.50 -16.48 4.71 -862.45 -4.06 -20.55 16 16 C 0.08 3.27 4.64 86.30 0.40 3.67 16 17 C 0.01 0.32 4.13 29.85 0.12 0.44 16 18 C -0.53 -31.27 9.66 25.60 0.25 -31.02 16 19 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 20 C 0.01 0.52 5.47 84.66 0.46 0.98 16 21 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 22 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 26 C 0.02 0.51 5.63 86.65 0.49 1.00 16 27 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.74 8.11 -2.39 -0.02 0.73 16 30 H 0.09 1.63 7.68 -2.39 -0.02 1.61 16 31 H 0.11 1.78 8.08 -2.39 -0.02 1.77 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.39 7.83 -2.39 -0.02 1.37 16 36 H 0.05 2.12 8.08 -2.39 -0.02 2.10 16 37 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 38 H 0.02 0.91 6.79 -2.39 -0.02 0.90 16 39 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 40 H 0.06 1.63 7.81 -2.38 -0.02 1.61 16 41 H 0.08 2.42 7.80 -2.39 -0.02 2.41 16 Total: -1.00 -75.05 338.45 -1.14 -76.20 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.94 Total: 12.27 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 6.24 Total: -2.97 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -6.77 Total: -122.68 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -1.56 Total: -10.10 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -75.05 -1.14 -76.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284716836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.337 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds