Wall clock time and date at job start Tue Mar 31 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34584 * 125.74468 * 2 1 4 4 N 1.30871 * 107.62214 * 179.97438 * 3 2 1 5 5 C 1.34545 * 107.27344 * 359.97438 * 4 3 2 6 6 C 1.47869 * 126.05366 * 179.97438 * 5 4 3 7 7 O 1.21556 * 120.00297 * 175.59994 * 6 5 4 8 8 N 1.34782 * 119.99609 * 355.59877 * 6 5 4 9 9 C 1.46502 * 119.99828 * 185.80482 * 8 6 5 10 10 C 1.50694 * 109.47431 * 89.99778 * 9 8 6 11 11 H 1.08007 * 119.99897 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00564 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00716 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99628 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47039 * 90.00012 * 14 12 10 16 16 H 1.48504 * 109.47404 * 209.99708 * 14 12 10 17 17 H 1.48496 * 109.47237 * 330.00193 * 14 12 10 18 18 C 1.46495 * 120.00063 * 5.80404 * 8 6 5 19 19 C 1.53001 * 109.46996 * 90.67769 * 18 8 6 20 20 C 1.52999 * 109.47305 * 61.95197 * 19 18 8 21 21 C 1.53000 * 109.46947 * 181.95302 * 19 18 8 22 22 C 1.53003 * 109.47219 * 301.95066 * 19 18 8 23 23 N 1.28850 * 125.74835 * 180.28662 * 2 1 3 24 24 H 1.08995 * 109.46907 * 90.00487 * 1 2 3 25 25 H 1.09000 * 109.46619 * 210.00028 * 1 2 3 26 26 H 1.08994 * 109.47033 * 330.00002 * 1 2 3 27 27 H 1.07997 * 126.18975 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.46919 * 210.00568 * 9 8 6 29 29 H 1.09007 * 109.46868 * 330.00040 * 9 8 6 30 30 H 0.96998 * 120.00458 * 179.97438 * 13 12 10 31 31 H 1.08997 * 109.47094 * 210.67831 * 18 8 6 32 32 H 1.08997 * 109.47220 * 330.67721 * 18 8 6 33 33 H 1.09001 * 109.46861 * 60.00062 * 20 19 18 34 34 H 1.09002 * 109.46993 * 179.97438 * 20 19 18 35 35 H 1.09000 * 109.47301 * 300.00273 * 20 19 18 36 36 H 1.09003 * 109.47393 * 60.00423 * 21 19 18 37 37 H 1.09002 * 109.47285 * 179.97438 * 21 19 18 38 38 H 1.09001 * 109.47306 * 299.99991 * 21 19 18 39 39 H 1.09008 * 109.46643 * 51.62045 * 22 19 18 40 40 H 1.08996 * 109.47134 * 171.62080 * 22 19 18 41 41 H 1.08997 * 109.47347 * 291.62518 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0923 0.0000 4 7 3.4950 0.6853 0.0006 5 6 3.4751 -0.6601 0.0015 6 6 4.6575 -1.5479 0.0018 7 8 4.5134 -2.7522 0.0834 8 7 5.8952 -1.0219 -0.0884 9 6 7.0582 -1.9036 -0.2163 10 6 7.3351 -2.1616 -1.6749 11 1 6.7077 -1.7134 -2.4312 12 6 8.3898 -2.9691 -2.0441 13 7 8.6312 -3.1947 -3.3171 14 14 9.4754 -3.7438 -0.7362 15 1 8.9206 -5.0667 -0.3523 16 1 10.8487 -3.9200 -1.2732 17 1 9.5200 -2.8607 0.4569 18 6 6.0774 0.4313 -0.0586 19 6 6.2815 0.8902 1.3866 20 6 7.5491 0.2464 1.9520 21 6 6.4232 2.4132 1.4229 22 6 5.0762 0.4699 2.2302 23 7 2.2178 -1.0457 -0.0052 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.9163 2.1191 -0.0004 28 1 7.9264 -1.4280 0.2399 29 1 6.8550 -2.8485 0.2877 30 1 9.3735 -3.7625 -3.5768 31 1 6.9512 0.7002 -0.6520 32 1 5.1937 0.9169 -0.4726 33 1 8.4077 0.5459 1.3510 34 1 7.6947 0.5737 2.9814 35 1 7.4482 -0.8386 1.9261 36 1 5.5201 2.8719 1.0203 37 1 6.5681 2.7402 2.4526 38 1 7.2818 2.7127 0.8219 39 1 4.8851 -0.5936 2.0862 40 1 5.2845 0.6624 3.2827 41 1 4.2005 1.0413 1.9227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291035059.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:15 Heat of formation + Delta-G solvation = 51.875776 kcal Electronic energy + Delta-G solvation = -23383.645718 eV Core-core repulsion = 20107.832240 eV Total energy + Delta-G solvation = -3275.813478 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.42600 -40.92378 -38.43315 -35.74975 -35.46580 -34.35474 -32.70984 -30.82389 -28.62907 -28.03448 -27.91685 -27.00066 -25.41047 -23.75178 -22.76319 -20.83371 -19.91358 -19.18020 -18.16313 -17.75689 -17.46989 -17.22736 -16.55227 -16.14217 -15.56501 -15.27453 -15.02032 -14.79920 -14.64453 -14.21851 -13.98804 -13.88817 -13.67721 -13.36023 -13.05356 -12.91131 -12.76857 -12.54363 -12.45857 -12.38617 -12.14712 -11.82223 -11.69023 -11.67980 -11.53892 -11.21655 -11.08398 -10.83708 -10.63974 -10.45971 -9.35298 -8.35288 -6.40482 0.42002 1.23570 1.30489 1.35374 1.42788 1.44896 2.16734 2.29944 2.40569 2.98341 3.14688 3.53718 3.91810 4.00528 4.04360 4.20919 4.38343 4.44864 4.63097 4.69794 4.72120 4.72890 4.78460 4.85780 4.92055 4.92830 5.00760 5.09012 5.16316 5.19072 5.28321 5.41185 5.44078 5.48109 5.51794 5.62697 5.70250 5.93165 6.22229 6.55467 6.59752 7.01603 7.18935 7.31289 8.81910 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.006319 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.695510 B = 4430.000385 C = 5357.389332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.301 5.301 3 C 0.201 3.799 4 N -0.487 5.487 5 C 0.135 3.865 6 C 0.594 3.406 7 O -0.585 6.585 8 N -0.568 5.568 9 C 0.227 3.773 10 C -0.539 4.539 11 H 0.026 0.974 12 C 0.016 3.984 13 N -0.943 5.943 14 Si 0.943 3.057 15 H -0.275 1.275 16 H -0.269 1.269 17 H -0.238 1.238 18 C 0.092 3.908 19 C -0.070 4.070 20 C -0.149 4.149 21 C -0.122 4.122 22 C -0.126 4.126 23 N -0.293 5.293 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.149 0.851 27 H 0.286 0.714 28 H 0.061 0.939 29 H 0.016 0.984 30 H 0.270 0.730 31 H 0.059 0.941 32 H 0.135 0.865 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.009 0.991 40 H 0.056 0.944 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.047 17.452 12.228 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.097 5.097 3 C -0.093 4.093 4 N -0.214 5.214 5 C -0.143 4.143 6 C 0.380 3.620 7 O -0.464 6.464 8 N -0.297 5.297 9 C 0.105 3.895 10 C -0.578 4.578 11 H 0.045 0.955 12 C -0.182 4.182 13 N -0.583 5.583 14 Si 0.766 3.234 15 H -0.201 1.201 16 H -0.194 1.194 17 H -0.161 1.161 18 C -0.030 4.030 19 C -0.071 4.071 20 C -0.206 4.206 21 C -0.180 4.180 22 C -0.184 4.184 23 N -0.134 5.134 24 H 0.121 0.879 25 H 0.111 0.889 26 H 0.167 0.833 27 H 0.301 0.699 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.914 16.270 12.138 25.188 hybrid contribution 0.475 -1.039 -0.292 1.179 sum -14.439 15.231 11.846 24.100 Atomic orbital electron populations 1.22734 0.69254 1.07851 1.06441 1.47763 1.10760 1.02935 1.48206 1.27752 0.84790 0.97643 0.99092 1.71181 1.21514 1.07536 1.21158 1.23178 0.91274 0.90327 1.09564 1.16903 0.82440 0.85650 0.77042 1.90716 1.86189 1.16426 1.53035 1.47617 1.04747 1.08915 1.68431 1.19513 0.84673 0.90191 0.95148 1.21534 1.13781 1.30505 0.91955 0.95541 1.25791 0.98694 0.95955 0.97798 1.70039 1.31293 1.39211 1.17743 0.85780 0.78085 0.79612 0.79965 1.20080 1.19405 1.16143 1.22583 1.04930 0.77846 0.97609 1.20773 0.94913 0.97471 0.93929 1.22053 0.97528 0.99748 1.01247 1.21662 1.02492 0.91518 1.02335 1.21930 0.98702 0.98839 0.98886 1.74269 1.03136 1.15945 1.20092 0.87915 0.88933 0.83338 0.69873 0.92157 0.96627 0.92131 0.92242 0.84845 0.92696 0.91179 0.95016 0.90970 0.91425 0.92654 0.97179 0.92503 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 11.38 127.77 1.45 1.98 16 2 N -0.30 -6.06 3.72 -373.47 -1.39 -7.45 16 3 C 0.20 3.33 12.59 180.30 2.27 5.60 16 4 N -0.49 -13.65 5.08 -193.03 -0.98 -14.63 16 5 C 0.14 5.22 6.46 137.13 0.89 6.11 16 6 C 0.59 29.33 5.93 86.79 0.51 29.84 16 7 O -0.58 -34.13 16.64 -3.89 -0.06 -34.20 16 8 N -0.57 -26.78 1.98 -829.55 -1.65 -28.43 16 9 C 0.23 12.07 3.24 85.63 0.28 12.35 16 10 C -0.54 -33.80 9.94 25.60 0.25 -33.55 16 11 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 12 C 0.02 0.98 5.47 84.65 0.46 1.44 16 13 N -0.94 -61.60 13.96 21.44 0.30 -61.30 16 14 Si 0.94 46.41 27.47 68.60 1.88 48.30 16 15 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 18 C 0.09 3.41 4.45 86.38 0.38 3.80 16 19 C -0.07 -2.04 0.84 -52.18 -0.04 -2.08 16 20 C -0.15 -4.59 7.28 71.98 0.52 -4.06 16 21 C -0.12 -2.57 8.47 71.98 0.61 -1.96 16 22 C -0.13 -3.67 6.99 71.98 0.50 -3.17 16 23 N -0.29 -10.18 12.09 -52.44 -0.63 -10.82 16 24 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.15 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.29 0.57 8.06 -2.91 -0.02 0.55 16 28 H 0.06 2.96 5.02 -2.39 -0.01 2.95 16 29 H 0.02 0.90 6.78 -2.38 -0.02 0.88 16 30 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 31 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 32 H 0.13 4.62 4.58 -6.45 -0.03 4.59 16 33 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.03 1.16 5.90 -2.39 -0.01 1.14 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.01 0.34 5.48 -2.38 -0.01 0.33 16 40 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 41 H 0.08 2.02 5.89 -2.39 -0.01 2.00 16 Total: -1.00 -92.06 324.10 6.52 -85.54 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.95 Total: 6.69 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 8.10 Total: 16.29 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -4.35 Total: -122.63 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.06 Total: -34.20 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.30 kcal Total: -92.06 6.52 -85.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291035059.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.421 kcal (2) G-P(sol) polarization free energy of solvation -92.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds