Wall clock time and date at job start Tue Mar 31 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47514 * 2 1 4 4 C 1.53005 * 109.46913 * 119.99965 * 2 1 3 5 5 H 1.08992 * 109.47107 * 300.00345 * 4 2 1 6 6 N 1.46499 * 109.46899 * 179.97438 * 4 2 1 7 7 C 1.34773 * 119.99820 * 85.00625 * 6 4 2 8 8 O 1.21277 * 120.00313 * 359.97438 * 7 6 4 9 9 C 1.50702 * 120.00041 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47371 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47034 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00039 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99623 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00170 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99835 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47097 * 89.99859 * 15 13 11 17 17 H 1.48497 * 109.47013 * 209.99884 * 15 13 11 18 18 H 1.48504 * 109.47019 * 329.99428 * 15 13 11 19 19 C 1.50704 * 109.46855 * 60.00040 * 4 2 1 20 20 N 1.30523 * 126.34835 * 75.02491 * 19 4 2 21 21 N 1.28592 * 109.67062 * 179.97438 * 20 19 4 22 22 C 1.30524 * 109.67571 * 359.97438 * 21 20 19 23 23 N 1.35485 * 107.30675 * 359.97438 * 22 21 20 24 24 C 1.46500 * 126.98239 * 179.97438 * 23 22 21 25 25 H 1.08996 * 109.47285 * 300.00392 * 1 2 3 26 26 H 1.09003 * 109.46501 * 60.00135 * 1 2 3 27 27 H 1.08992 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46867 * 239.99915 * 2 1 3 29 29 H 1.08991 * 109.47378 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47138 * 300.00020 * 3 2 1 31 31 H 1.09007 * 109.46921 * 59.99925 * 3 2 1 32 32 H 0.97004 * 119.99818 * 264.99684 * 6 4 2 33 33 H 1.09004 * 109.46809 * 299.99435 * 9 7 6 34 34 H 1.08997 * 109.47253 * 59.99464 * 9 7 6 35 35 H 1.08997 * 109.46490 * 299.99717 * 10 9 7 36 36 H 1.08997 * 109.47171 * 59.99657 * 10 9 7 37 37 H 0.96998 * 120.00082 * 180.02562 * 14 13 11 38 38 H 1.07998 * 126.34400 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.46950 * 90.02449 * 24 23 22 40 40 H 1.08997 * 109.47404 * 210.03030 * 24 23 22 41 41 H 1.09005 * 109.46940 * 330.02790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2075 2.1392 6 7 3.5050 -0.7218 1.2490 7 6 4.1793 0.3358 1.7421 8 8 3.5734 1.2881 2.1856 9 6 5.6863 0.3351 1.7423 10 6 6.1969 1.6426 2.3511 11 6 7.7039 1.6415 2.3518 12 1 8.2435 0.7929 1.9579 13 6 8.3937 2.7234 2.8564 14 7 7.7366 3.7565 3.3365 15 14 10.2617 2.7224 2.8567 16 1 10.7573 3.3136 1.5878 17 1 10.7569 3.5255 4.0035 18 1 10.7560 1.3274 2.9792 19 6 1.5376 -2.1421 1.2492 20 7 1.9809 -3.1194 0.5062 21 7 1.3244 -4.1938 0.7673 22 6 0.4329 -3.9510 1.6892 23 7 0.5433 -2.6423 2.0220 24 6 -0.2521 -1.9152 3.0143 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.9896 -1.4834 0.8940 33 1 6.0491 -0.5068 2.3321 34 1 6.0498 0.2449 0.7187 35 1 5.8341 2.4841 1.7609 36 1 5.8335 1.7331 3.3747 37 1 8.2220 4.5178 3.6911 38 1 -0.2631 -4.6619 2.1095 39 1 0.2356 -1.9771 3.9871 40 1 -0.3376 -0.8702 2.7165 41 1 -1.2465 -2.3574 3.0777 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291128270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:21 Heat of formation + Delta-G solvation = 3.619152 kcal Electronic energy + Delta-G solvation = -22281.721227 eV Core-core repulsion = 19003.815185 eV Total energy + Delta-G solvation = -3277.906042 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.22397 -41.03332 -37.83015 -35.97958 -35.52720 -34.47102 -32.91808 -31.83642 -28.71619 -28.22948 -28.09720 -26.77274 -23.74974 -23.33086 -22.53823 -21.16989 -20.89840 -18.90025 -18.24612 -17.65380 -17.33954 -17.19619 -16.69153 -16.45245 -15.94826 -15.74897 -15.10935 -14.93159 -14.34085 -14.21768 -14.12409 -13.86342 -13.60824 -13.44692 -13.22279 -12.97967 -12.80317 -12.68624 -12.55112 -12.47002 -12.03055 -11.86707 -11.83056 -11.62052 -11.40376 -11.28356 -11.14531 -10.77846 -10.55253 -10.36162 -10.08692 -8.17130 -6.30217 0.71964 1.42331 1.44311 1.44814 1.55740 1.69227 1.79835 2.27134 2.45447 3.00607 3.16026 3.61866 3.74242 3.82032 3.87802 3.99894 4.17562 4.18344 4.32421 4.45610 4.54093 4.55109 4.59928 4.64516 4.73285 4.85931 4.87521 4.90629 5.05421 5.07267 5.11006 5.23512 5.37260 5.46715 5.52283 5.66348 5.86971 5.87305 6.20104 6.50638 6.87489 7.27834 7.39624 7.66461 8.95174 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.003636 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.524032 B = 7698.917086 C = 8121.843042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 C -0.134 4.134 4 C 0.243 3.757 5 H 0.098 0.902 6 N -0.716 5.716 7 C 0.522 3.478 8 O -0.563 6.563 9 C -0.122 4.122 10 C 0.047 3.953 11 C -0.545 4.545 12 H 0.071 0.929 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.970 3.030 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.259 1.259 19 C 0.167 3.833 20 N -0.317 5.317 21 N -0.343 5.343 22 C 0.170 3.830 23 N -0.465 5.465 24 C 0.056 3.944 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.413 0.587 33 H 0.097 0.903 34 H 0.099 0.901 35 H -0.012 1.012 36 H -0.013 1.013 37 H 0.263 0.737 38 H 0.266 0.734 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.456 -13.826 -2.610 24.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 C -0.191 4.191 4 C 0.135 3.865 5 H 0.116 0.884 6 N -0.370 5.370 7 C 0.311 3.689 8 O -0.441 6.441 9 C -0.162 4.162 10 C 0.009 3.991 11 C -0.583 4.583 12 H 0.089 0.911 13 C -0.200 4.200 14 N -0.574 5.574 15 Si 0.794 3.206 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.182 1.182 19 C -0.102 4.102 20 N -0.158 5.158 21 N -0.182 5.182 22 C -0.118 4.118 23 N -0.155 5.155 24 C -0.085 4.085 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.249 0.751 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.006 0.994 36 H 0.005 0.995 37 H 0.072 0.928 38 H 0.282 0.718 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.075 -13.743 -3.193 24.536 hybrid contribution 0.453 0.712 0.964 1.281 sum -19.621 -13.031 -2.229 23.659 Atomic orbital electron populations 1.21765 0.92609 1.01526 1.03503 1.21465 0.97504 0.95898 0.96512 1.21791 1.00269 0.95275 1.01786 1.19132 0.80957 0.85684 1.00706 0.88384 1.45947 1.05757 1.21231 1.64064 1.21080 0.90944 0.81371 0.75522 1.90659 1.70808 1.35443 1.47210 1.21654 0.89338 1.01351 1.03859 1.18650 0.94592 0.91568 0.94258 1.21714 0.92604 1.03435 1.40553 0.91100 1.26052 1.04196 0.95072 0.94729 1.70155 1.37742 1.07578 1.41961 0.85382 0.78772 0.78727 0.77748 1.19756 1.21014 1.18250 1.24556 0.93043 0.98091 0.94547 1.74122 1.23246 0.96151 1.22291 1.74183 1.08178 1.19775 1.16096 1.27328 1.01898 0.85160 0.97390 1.46366 1.27807 1.10286 1.31040 1.22604 0.97173 0.98401 0.90285 0.91256 0.90905 0.93143 0.90852 0.94844 0.91628 0.92872 0.75060 0.88429 0.88245 0.99384 0.99502 0.92845 0.71817 0.88943 0.88731 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.85 71.98 0.64 -1.68 16 2 C -0.09 -2.18 2.68 -10.79 -0.03 -2.21 16 3 C -0.13 -3.78 7.72 71.98 0.56 -3.22 16 4 C 0.24 6.05 2.15 44.25 0.10 6.15 16 5 H 0.10 2.50 6.67 -2.39 -0.02 2.48 16 6 N -0.72 -21.06 4.96 -446.10 -2.21 -23.27 16 7 C 0.52 19.69 6.19 87.66 0.54 20.23 16 8 O -0.56 -24.99 13.10 -3.02 -0.04 -25.03 16 9 C -0.12 -5.00 5.64 29.85 0.17 -4.83 16 10 C 0.05 2.59 4.26 29.85 0.13 2.72 16 11 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 12 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 13 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 14 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 15 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 C 0.17 3.83 5.56 137.98 0.77 4.59 16 20 N -0.32 -8.85 11.92 -50.15 -0.60 -9.45 16 21 N -0.34 -8.69 12.21 -59.99 -0.73 -9.42 16 22 C 0.17 2.59 12.74 180.11 2.30 4.88 16 23 N -0.47 -7.14 3.15 -542.07 -1.71 -8.85 16 24 C 0.06 0.37 10.84 127.77 1.38 1.76 16 25 H 0.07 1.01 7.74 -2.39 -0.02 0.99 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 0.84 7.22 -2.39 -0.02 0.82 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.14 5.77 -2.39 -0.01 1.13 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.62 7.53 -2.38 -0.02 1.60 16 32 H 0.41 11.26 8.36 -92.71 -0.77 10.48 16 33 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 35 H -0.01 -0.76 8.10 -2.39 -0.02 -0.78 16 36 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 37 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.27 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.09 0.68 6.96 -2.39 -0.02 0.66 16 41 H 0.13 -0.09 8.14 -2.38 -0.02 -0.11 16 Total: -1.00 -80.55 338.23 4.52 -76.03 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.25 Total: 14.19 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 7.24 Total: -2.32 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -4.96 Total: -109.49 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.03 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -80.55 4.52 -76.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291128270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.649 kcal (2) G-P(sol) polarization free energy of solvation -80.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds