Wall clock time and date at job start Tue Mar 31 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21551 * 119.99942 * 359.97438 * 14 13 3 16 16 C 1.47870 * 120.00190 * 180.02562 * 14 13 3 17 17 N 1.34555 * 126.04684 * 0.02562 * 16 14 13 18 18 C 1.30879 * 107.26874 * 180.02562 * 17 16 14 19 19 N 1.34586 * 107.62076 * 0.02562 * 18 17 16 20 20 C 1.46500 * 125.74219 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47092 * 75.00030 * 20 19 18 22 22 C 1.52999 * 109.47244 * 194.99694 * 20 19 18 23 23 C 1.52998 * 109.47407 * 315.00041 * 20 19 18 24 24 N 1.28847 * 108.51005 * 359.72879 * 19 18 17 25 25 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 27 27 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 28 28 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 29 29 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 30 30 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 32 32 H 1.07993 * 126.18818 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47095 * 59.99906 * 21 20 19 34 34 H 1.09003 * 109.47328 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.47272 * 300.00087 * 21 20 19 36 36 H 1.08997 * 109.47141 * 60.00154 * 22 20 19 37 37 H 1.09003 * 109.47645 * 180.02562 * 22 20 19 38 38 H 1.09002 * 109.47272 * 300.00295 * 22 20 19 39 39 H 1.09000 * 109.46842 * 59.99984 * 23 20 19 40 40 H 1.09003 * 109.46770 * 180.02562 * 23 20 19 41 41 H 1.08997 * 109.46813 * 299.99744 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3383 2.6316 0.4491 16 6 0.0603 3.3204 2.6463 17 7 0.8264 3.4254 3.7475 18 6 0.1289 4.0731 4.6458 19 7 -1.0657 4.3667 4.1000 20 6 -2.1552 5.0879 4.7626 21 6 -1.8139 6.5779 4.8296 22 6 -3.4498 4.8966 3.9700 23 6 -2.3398 4.5428 6.1802 24 7 -1.0880 3.9112 2.8949 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8033 0.3145 -3.1314 31 1 2.2841 2.1188 1.9977 32 1 0.4534 4.3261 5.6443 33 1 -1.6824 6.9663 3.8197 34 1 -2.6247 7.1147 5.3222 35 1 -0.8916 6.7144 5.3943 36 1 -3.6930 3.8351 3.9222 37 1 -4.2604 5.4335 4.4627 38 1 -3.3183 5.2850 2.9600 39 1 -1.4175 4.6792 6.7449 40 1 -3.1508 5.0792 6.6730 41 1 -2.5830 3.4814 6.1325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292010611.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:23 Heat of formation + Delta-G solvation = 43.033652 kcal Electronic energy + Delta-G solvation = -22265.308753 eV Core-core repulsion = 18989.111852 eV Total energy + Delta-G solvation = -3276.196901 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -43.32108 -38.77356 -37.42183 -34.95873 -32.72101 -32.08125 -31.15467 -30.46594 -27.96228 -27.81367 -27.03584 -24.37328 -22.92680 -22.68213 -20.40740 -20.04643 -19.24965 -17.81574 -16.72599 -16.45311 -15.57256 -15.48443 -14.87483 -14.54893 -14.52100 -14.05330 -14.00752 -13.21016 -12.99562 -12.88431 -12.70711 -12.61976 -12.23320 -12.06174 -11.97114 -11.67884 -11.39957 -11.31329 -11.26594 -10.94877 -10.72602 -10.28879 -10.25768 -10.19984 -10.12229 -9.63642 -9.28877 -9.20572 -9.01597 -8.42255 -7.76550 -6.07152 -4.12911 1.71171 2.18671 2.43125 3.31343 3.37371 3.39718 3.80936 4.04345 4.07759 4.24922 4.35178 4.36622 4.47093 4.80268 4.96458 5.08920 5.15565 5.17702 5.25971 5.30810 5.39081 5.46500 5.50455 5.69381 5.91777 6.27130 6.42934 6.48827 6.52676 6.65031 6.69335 7.08825 7.23930 7.39371 7.46933 7.68278 7.78745 7.90862 8.14592 8.25222 8.76554 8.86103 9.17389 9.52761 11.00907 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.003831 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.502623 B = 7306.977227 C = 7758.958816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.270 3.730 4 H 0.057 0.943 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.597 3.403 15 O -0.529 6.529 16 C 0.151 3.849 17 N -0.483 5.483 18 C 0.180 3.820 19 N -0.299 5.299 20 C 0.168 3.832 21 C -0.160 4.160 22 C -0.148 4.148 23 C -0.159 4.159 24 N -0.256 5.256 25 H 0.024 0.976 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.264 0.736 31 H 0.398 0.602 32 H 0.217 0.783 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 9.230 18.304 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.075 0.925 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.332 5.332 14 C 0.377 3.623 15 O -0.404 6.404 16 C -0.129 4.129 17 N -0.208 5.208 18 C -0.116 4.116 19 N -0.096 5.096 20 C 0.086 3.914 21 C -0.218 4.218 22 C -0.206 4.206 23 C -0.217 4.217 24 N -0.093 5.093 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.232 0.768 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.531 9.023 16.937 22.389 hybrid contribution 1.323 0.036 0.718 1.505 sum -10.208 9.059 17.655 22.315 Atomic orbital electron populations 1.21854 0.98093 0.98219 1.01506 1.21864 0.92919 0.99712 1.01487 1.18889 0.94645 0.89063 0.80590 0.92480 1.21196 0.90479 1.43337 1.02234 0.91884 1.24877 0.98486 0.95118 0.95043 1.69973 1.35372 1.43232 1.03276 0.86495 0.85017 0.78644 0.77158 1.20441 1.21220 1.19873 1.46280 1.13540 1.54489 1.18925 1.16377 0.83525 0.79181 0.83197 1.90788 1.51319 1.59706 1.38548 1.24380 0.88481 1.03449 0.96598 1.71325 1.30802 1.18193 1.00453 1.26260 0.84049 0.99865 1.01405 1.47735 1.13701 1.39323 1.08865 1.21075 0.85672 0.91808 0.92885 1.22261 1.03056 0.92595 1.03858 1.21985 0.93766 1.03700 1.01134 1.22247 1.03648 1.02649 0.93180 1.74309 1.22971 1.13577 0.98457 0.95698 0.92890 0.94157 0.94600 0.89716 0.92592 0.76833 0.76649 0.91211 0.89803 0.91409 0.91265 0.90556 0.90459 0.91189 0.89533 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.52 37.15 0.32 -2.93 16 2 C -0.12 -3.02 5.49 -26.74 -0.15 -3.17 16 3 C 0.27 7.09 2.11 -69.09 -0.15 6.94 16 4 H 0.06 1.72 7.55 -51.93 -0.39 1.33 16 5 C -0.53 -14.59 8.67 -34.44 -0.30 -14.89 16 6 H 0.06 1.67 7.73 -52.48 -0.41 1.26 16 7 C 0.07 1.88 5.19 -17.82 -0.09 1.78 16 8 N -0.88 -25.31 12.00 55.43 0.67 -24.64 16 9 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.68 -15.80 5.02 -55.88 -0.28 -16.08 16 14 C 0.60 13.70 6.41 -12.32 -0.08 13.62 16 15 O -0.53 -13.59 14.22 5.32 0.08 -13.51 16 16 C 0.15 2.97 7.96 -156.34 -1.24 1.73 16 17 N -0.48 -8.13 11.09 -12.36 -0.14 -8.26 16 18 C 0.18 2.20 11.71 -90.47 -1.06 1.14 16 19 N -0.30 -3.78 3.16 -49.84 -0.16 -3.94 16 20 C 0.17 1.36 1.23 -131.82 -0.16 1.19 16 21 C -0.16 -1.00 8.72 37.16 0.32 -0.68 16 22 C -0.15 -1.25 8.05 37.16 0.30 -0.96 16 23 C -0.16 -0.82 8.28 37.16 0.31 -0.51 16 24 N -0.26 -4.48 11.09 32.08 0.36 -4.13 16 25 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 26 H 0.05 1.30 7.87 -51.93 -0.41 0.89 16 27 H 0.04 0.94 5.64 -51.93 -0.29 0.64 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 2.29 6.64 -51.93 -0.34 1.94 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 31 H 0.40 8.52 8.24 -40.82 -0.34 8.18 16 32 H 0.22 1.50 7.53 -52.49 -0.40 1.11 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.81 8.02 -51.93 -0.42 0.40 16 39 H 0.07 0.27 7.34 -51.93 -0.38 -0.11 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -33.59 337.95 -7.70 -41.29 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.31 Total: 4.85 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.98 Total: 3.28 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.45 Total: -57.05 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.51 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.59 -7.70 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292010611.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.322 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds