Wall clock time and date at job start Tue Mar 31 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.30518 * 126.34818 * 60.01963 * 4 2 1 6 6 N 1.28591 * 109.67461 * 179.97438 * 5 4 2 7 7 C 1.30520 * 109.67224 * 359.97438 * 6 5 4 8 8 C 1.50704 * 126.34352 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47251 * 89.97639 * 8 7 6 10 10 C 1.34777 * 119.99797 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00275 * 0.02562 * 10 9 8 12 12 C 1.50705 * 119.99932 * 179.97438 * 10 9 8 13 13 C 1.53005 * 109.46922 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.46815 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00209 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99521 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00461 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47258 * 90.00000 * 18 16 14 20 20 H 1.48501 * 109.47307 * 210.00353 * 18 16 14 21 21 H 1.48508 * 109.46843 * 329.99797 * 18 16 14 22 22 N 1.35491 * 107.30813 * 359.77126 * 7 6 5 23 23 C 1.46499 * 126.98374 * 180.22365 * 22 7 6 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09005 * 109.46755 * 209.96945 * 8 7 6 32 32 H 1.08990 * 109.47197 * 329.97206 * 8 7 6 33 33 H 0.96996 * 120.00115 * 359.97438 * 9 8 7 34 34 H 1.09005 * 109.46825 * 300.00007 * 12 10 9 35 35 H 1.08997 * 109.46805 * 60.00014 * 12 10 9 36 36 H 1.09000 * 109.47088 * 300.00043 * 13 12 10 37 37 H 1.08997 * 109.46764 * 60.00098 * 13 12 10 38 38 H 0.97002 * 119.99817 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47455 * 270.16110 * 23 22 7 40 40 H 1.09004 * 109.47026 * 30.15944 * 23 22 7 41 41 H 1.08997 * 109.47321 * 150.16076 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7950 -0.3739 -2.4691 6 7 2.3799 -1.2002 -3.2619 7 6 3.0174 -2.1011 -2.5652 8 6 3.8285 -3.2461 -3.1150 9 7 5.2185 -2.8188 -3.2930 10 6 6.1327 -3.6835 -3.7759 11 8 5.8046 -4.8151 -4.0634 12 6 7.5624 -3.2437 -3.9597 13 6 8.3858 -4.4064 -4.5177 14 6 9.8153 -3.9664 -4.7020 15 1 10.1074 -2.9586 -4.4463 16 6 10.7505 -4.8509 -5.1961 17 7 10.3949 -6.0783 -5.5070 18 14 12.5226 -4.3059 -5.4239 19 1 13.2877 -4.5773 -4.1805 20 1 13.1300 -5.0559 -6.5526 21 1 12.5589 -2.8510 -5.7199 22 7 2.8196 -1.8128 -1.2562 23 6 3.3467 -2.5463 -0.1028 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 3.7925 -4.0841 -2.4187 32 1 3.4172 -3.5543 -4.0760 33 1 5.4808 -1.9137 -3.0634 34 1 7.5982 -2.4062 -4.6564 35 1 7.9738 -2.9349 -2.9987 36 1 8.3499 -5.2441 -3.8213 37 1 7.9741 -4.7147 -5.4786 38 1 11.0527 -6.7005 -5.8549 39 1 2.6409 -3.3251 0.1860 40 1 4.3015 -3.0010 -0.3668 41 1 3.4898 -1.8586 0.7307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330880294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:16 Heat of formation + Delta-G solvation = 19.368472 kcal Electronic energy + Delta-G solvation = -21276.558403 eV Core-core repulsion = 17999.335303 eV Total energy + Delta-G solvation = -3277.223100 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.47326 -39.21855 -36.27613 -35.55118 -34.44878 -33.47731 -31.28074 -30.35280 -28.06019 -27.61736 -27.05678 -25.18799 -23.83974 -21.81901 -21.12393 -20.28639 -19.76567 -17.44899 -16.99895 -16.77086 -15.95182 -15.67169 -15.56220 -15.03479 -14.77244 -14.42249 -13.95485 -13.90934 -13.50606 -13.45684 -13.23744 -12.99351 -12.58036 -12.20713 -12.14307 -12.03914 -11.71687 -11.66153 -11.53921 -11.19299 -10.94310 -10.61607 -10.53477 -10.48885 -9.98933 -9.73033 -9.55486 -9.17232 -9.00628 -8.98817 -8.33554 -5.97661 -4.02109 1.38636 2.08082 2.54832 3.14118 3.32327 3.38551 3.41172 3.53723 3.80436 3.98918 4.19318 4.28653 4.46454 4.56495 4.64382 4.73729 4.79712 4.95284 5.16670 5.20924 5.28921 5.37396 5.39339 5.43068 5.51942 5.63036 5.68950 5.78168 5.79446 5.94705 6.17161 6.20816 6.45067 6.50967 6.84385 7.70899 7.73316 7.83474 8.04913 8.35981 8.49330 8.65043 9.06100 9.61541 11.13260 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035111 B = 0.002751 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.283136 B =10177.150796 C =10469.671187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.006 4.006 3 C -0.143 4.143 4 C 0.181 3.819 5 N -0.288 5.288 6 N -0.273 5.273 7 C 0.159 3.841 8 C 0.210 3.790 9 N -0.742 5.742 10 C 0.514 3.486 11 O -0.530 6.530 12 C -0.128 4.128 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.467 5.467 23 C 0.066 3.934 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.399 0.601 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.435 12.027 16.348 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 C -0.201 4.201 4 C -0.086 4.086 5 N -0.128 5.128 6 N -0.114 5.114 7 C -0.108 4.108 8 C 0.084 3.916 9 N -0.398 5.398 10 C 0.303 3.697 11 O -0.404 6.404 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.157 5.157 23 C -0.077 4.077 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.233 0.767 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.121 11.727 14.867 26.911 hybrid contribution 1.603 -0.116 1.129 1.964 sum -17.518 11.611 15.996 26.412 Atomic orbital electron populations 1.21807 0.92521 1.02433 1.03217 1.19613 0.97003 0.95876 0.90153 1.21818 1.01238 0.93790 1.03232 1.24859 0.96664 0.89039 0.98077 1.74248 1.19952 1.21017 0.97623 1.74335 1.09634 1.01770 1.25626 1.24780 1.03956 1.01507 0.80569 1.19392 0.80767 0.89561 1.01921 1.46254 1.07667 1.16467 1.69393 1.21634 0.88300 0.84825 0.74957 1.90690 1.81237 1.19773 1.48740 1.21884 0.88963 1.03390 1.02590 1.18911 0.92760 0.91398 0.96999 1.21212 0.93846 0.97985 1.43539 0.92606 1.25026 0.98921 0.94943 0.95506 1.70000 1.34288 1.04743 1.43777 0.86585 0.84932 0.78659 0.77733 1.20696 1.21194 1.19877 1.46048 1.38374 1.23214 1.08089 1.22213 1.01377 0.97453 0.86647 0.91347 0.92612 0.91087 0.89693 0.91341 0.92509 0.91071 0.89883 0.88073 0.76680 0.89985 0.90223 0.95801 0.95683 0.92929 0.89597 0.88370 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.18 37.16 0.34 -0.50 16 2 C -0.01 -0.04 3.27 -91.77 -0.30 -0.34 16 3 C -0.14 -0.87 9.17 37.16 0.34 -0.53 16 4 C 0.18 1.86 6.54 -154.98 -1.01 0.84 16 5 N -0.29 -3.98 12.21 32.80 0.40 -3.58 16 6 N -0.27 -4.09 12.21 32.80 0.40 -3.69 16 7 C 0.16 1.95 7.40 -154.99 -1.15 0.81 16 8 C 0.21 2.64 5.84 -5.19 -0.03 2.61 16 9 N -0.74 -10.26 5.55 -61.47 -0.34 -10.60 16 10 C 0.51 9.51 7.83 -10.98 -0.09 9.42 16 11 O -0.53 -11.97 15.98 5.55 0.09 -11.88 16 12 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 13 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 14 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 N -0.47 -4.46 3.15 -118.00 -0.37 -4.83 16 23 C 0.07 0.36 10.57 59.85 0.63 0.99 16 24 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.36 6.89 -51.93 -0.36 0.01 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.94 7.87 -51.93 -0.41 0.54 16 32 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.40 4.78 8.46 -40.82 -0.35 4.44 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.56 7.82 -51.93 -0.41 0.15 16 41 H 0.09 0.30 7.18 -51.93 -0.37 -0.07 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -36.25 349.43 -7.29 -43.54 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.50 Total: -2.12 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.95 Total: -2.13 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.83 Total: -49.23 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.25 -7.29 -43.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330880294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.907 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds