Wall clock time and date at job start Tue Mar 31 2020 01:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47254 * 2 1 4 4 N 1.30840 * 125.89701 * 269.97298 * 3 2 1 5 5 N 1.40084 * 108.20476 * 180.02562 * 4 3 2 6 6 C 1.46501 * 126.04025 * 179.97438 * 5 4 3 7 7 C 1.34953 * 107.92945 * 359.75687 * 5 4 3 8 8 C 1.35323 * 107.73998 * 0.38944 * 7 5 4 9 9 C 1.50703 * 126.03779 * 179.87466 * 8 7 5 10 10 N 1.46505 * 109.47064 * 259.68767 * 9 8 7 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21584 * 120.00541 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99489 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99511 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.46736 * 179.97438 * 14 13 11 16 16 C 1.50697 * 109.47033 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99890 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00276 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99883 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46777 * 90.00321 * 20 18 16 22 22 H 1.48503 * 109.47030 * 210.00105 * 20 18 16 23 23 H 1.48492 * 109.47275 * 330.00654 * 20 18 16 24 24 H 1.09000 * 109.46854 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47499 * 300.00297 * 1 2 3 26 26 H 1.09000 * 109.46803 * 60.00491 * 1 2 3 27 27 H 1.09000 * 109.47051 * 239.99415 * 2 1 3 28 28 H 1.09000 * 109.46331 * 119.99751 * 2 1 3 29 29 H 1.08990 * 109.47441 * 89.97402 * 6 5 4 30 30 H 1.08996 * 109.47367 * 209.97802 * 6 5 4 31 31 H 1.09002 * 109.46736 * 329.97049 * 6 5 4 32 32 H 1.07992 * 126.13610 * 180.23708 * 7 5 4 33 33 H 1.09002 * 109.47152 * 139.68850 * 9 8 7 34 34 H 1.09001 * 109.46980 * 19.68950 * 9 8 7 35 35 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 36 36 H 0.97003 * 120.00377 * 0.02562 * 13 11 10 37 37 H 1.08994 * 109.47121 * 299.99693 * 14 13 11 38 38 H 1.08994 * 109.47503 * 60.00345 * 14 13 11 39 39 H 1.08994 * 109.47144 * 299.99776 * 15 14 13 40 40 H 1.09004 * 109.46808 * 60.00030 * 15 14 13 41 41 H 0.96998 * 120.00482 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2886 2.1438 -1.0599 5 7 2.7338 3.4019 -0.6342 6 6 3.1287 4.5152 -1.5008 7 6 2.7303 3.4091 0.7153 8 6 2.3058 2.1940 1.1330 9 6 2.1491 1.7538 2.5658 10 7 3.3044 0.9419 2.9563 11 6 3.3819 0.4360 4.2031 12 8 2.4929 0.6531 5.0036 13 7 4.4449 -0.3105 4.5625 14 6 4.5288 -0.8608 5.9177 15 6 5.8238 -1.6627 6.0631 16 6 5.9105 -2.2283 7.4572 17 1 5.1208 -2.0356 8.1682 18 6 6.9976 -2.9928 7.8246 19 7 7.9590 -3.2280 6.9586 20 14 7.1047 -3.6946 9.5525 21 1 6.4658 -5.0348 9.5829 22 1 8.5304 -3.8167 9.9496 23 1 6.4030 -2.7902 10.4984 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.2579 5.1341 -1.7168 30 1 3.8860 5.1164 -0.9978 31 1 3.5361 4.1232 -2.4328 32 1 3.0173 4.2355 1.3485 33 1 1.2388 1.1629 2.6669 34 1 2.0866 2.6306 3.2104 35 1 4.0138 0.7691 2.3178 36 1 5.1544 -0.4834 3.9240 37 1 4.5223 -0.0462 6.6417 38 1 3.6753 -1.5142 6.0980 39 1 5.8299 -2.4774 5.3390 40 1 6.6777 -1.0097 5.8825 41 1 8.7235 -3.7661 7.2169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343933311.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:04 Heat of formation + Delta-G solvation = 28.178980 kcal Electronic energy + Delta-G solvation = -21047.460051 eV Core-core repulsion = 17770.619004 eV Total energy + Delta-G solvation = -3276.841048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59687 -39.36712 -35.57273 -34.76989 -34.12969 -32.78344 -31.99236 -30.80833 -29.35145 -27.45912 -25.47964 -24.30413 -23.35305 -21.09435 -20.93149 -20.42078 -19.66260 -18.01144 -16.85733 -16.33784 -15.89719 -15.47707 -15.34816 -14.86865 -14.49494 -14.42529 -13.99223 -13.67359 -13.58440 -13.40162 -13.23764 -13.09347 -12.53703 -12.28550 -12.25822 -12.21196 -11.55993 -11.32694 -11.14059 -10.99936 -10.66279 -10.59725 -10.25990 -9.90250 -9.53382 -9.49234 -9.23161 -8.89796 -8.69266 -8.43748 -8.15376 -6.05724 -4.08083 1.56966 2.19116 2.33913 3.32214 3.36824 3.39249 3.44832 3.70579 4.13720 4.43778 4.47947 4.64129 4.75180 4.84016 4.91220 5.00624 5.01795 5.15473 5.20785 5.31396 5.39739 5.49913 5.73888 5.78300 5.94670 5.98080 6.04240 6.37363 6.41007 6.46535 6.68234 6.74169 6.84529 7.09238 7.36336 7.45924 7.62919 7.68686 7.94063 8.31107 8.54258 8.97483 9.10614 9.56481 11.06003 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.002691 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.130333 B =10402.449540 C =10631.349714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.097 3.903 4 N -0.297 5.297 5 N -0.378 5.378 6 C 0.103 3.897 7 C 0.077 3.923 8 C -0.253 4.253 9 C 0.222 3.778 10 N -0.749 5.749 11 C 0.698 3.302 12 O -0.600 6.600 13 N -0.740 5.740 14 C 0.141 3.859 15 C 0.013 3.987 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.393 0.607 36 H 0.392 0.608 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.022 0.978 40 H 0.021 0.979 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 13.973 -18.690 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.071 4.071 4 N -0.119 5.119 5 N -0.159 5.159 6 C -0.039 4.039 7 C -0.071 4.071 8 C -0.265 4.265 9 C 0.097 3.903 10 N -0.406 5.406 11 C 0.398 3.602 12 O -0.479 6.479 13 N -0.393 5.393 14 C 0.018 3.982 15 C -0.025 4.025 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.193 0.807 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.226 0.774 36 H 0.225 0.775 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.821 14.273 -19.312 26.339 hybrid contribution 0.961 -0.363 1.080 1.490 sum -9.860 13.911 -18.232 24.963 Atomic orbital electron populations 1.21692 0.94111 1.02177 1.02219 1.20013 0.96324 0.88606 1.03733 1.22286 0.97781 0.96959 0.90025 1.77348 1.21229 0.90661 1.22668 1.48412 1.51332 1.11399 1.04742 1.21858 1.01012 0.85933 0.95066 1.22430 1.00173 0.99569 0.84898 1.20022 1.15606 0.94855 0.96021 1.19138 0.88422 0.94444 0.88321 1.45279 1.25308 1.57248 1.12795 1.16081 0.83100 0.79109 0.81952 1.90882 1.40385 1.65203 1.51468 1.45536 1.22321 1.54824 1.16667 1.21563 1.00735 0.96663 0.79254 1.19324 0.90622 0.94755 0.97780 1.21066 1.05800 1.31779 0.97180 0.92213 1.24997 0.95584 0.96204 0.97550 1.69954 1.09643 1.39135 1.34695 0.86516 0.77155 0.79484 0.84426 1.20572 1.21224 1.19720 0.91804 0.92217 0.92701 0.90405 0.89448 0.90779 0.89377 0.89264 0.80683 0.91148 0.91488 0.77358 0.77474 0.92868 0.92827 0.95987 0.96030 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.90 37.16 0.37 -0.88 16 2 C -0.05 -0.46 6.31 -27.88 -0.18 -0.63 16 3 C 0.10 1.06 6.47 -82.41 -0.53 0.53 16 4 N -0.30 -3.47 12.58 33.67 0.42 -3.04 16 5 N -0.38 -3.45 4.01 -68.17 -0.27 -3.73 16 6 C 0.10 0.49 11.47 59.85 0.69 1.18 16 7 C 0.08 0.67 11.40 -17.22 -0.20 0.48 16 8 C -0.25 -2.64 5.47 -105.05 -0.57 -3.22 16 9 C 0.22 2.62 5.78 -5.19 -0.03 2.59 16 10 N -0.75 -9.86 5.55 -66.41 -0.37 -10.23 16 11 C 0.70 12.39 8.57 -86.92 -0.74 11.65 16 12 O -0.60 -13.03 16.34 5.29 0.09 -12.95 16 13 N -0.74 -13.35 5.56 -65.22 -0.36 -13.71 16 14 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.86 7.96 -51.93 -0.41 0.45 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.39 4.43 8.48 -40.82 -0.35 4.09 16 36 H 0.39 6.15 8.49 -40.82 -0.35 5.80 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -34.73 353.70 -7.79 -42.52 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.57 Total: 3.31 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.78 Total: 1.60 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.15 Total: -56.33 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.73 -7.79 -42.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343933311.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.698 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds