Wall clock time and date at job start Tue Mar 31 2020 03:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47248 * 2 1 4 4 N 1.46903 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.46901 * 111.00104 * 66.04276 * 4 3 2 6 6 C 1.46895 * 111.00157 * 190.00066 * 4 3 2 7 7 C 1.50695 * 109.47676 * 169.99930 * 6 4 3 8 8 O 1.21297 * 119.99358 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00677 * 180.02562 * 7 6 4 10 10 C 1.40154 * 120.00504 * 179.97438 * 9 7 6 11 11 C 1.40411 * 125.97106 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86611 * 179.74212 * 11 10 9 13 13 N 1.34965 * 107.86302 * 0.38043 * 12 11 10 14 14 C 1.46495 * 125.97869 * 179.87777 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71943 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31221 * 125.97729 * 179.97438 * 10 9 7 24 24 H 1.08999 * 109.47059 * 59.99617 * 1 2 3 25 25 H 1.08998 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46761 * 300.00315 * 1 2 3 27 27 H 1.09000 * 109.46761 * 239.99685 * 2 1 3 28 28 H 1.09008 * 109.47267 * 120.00215 * 2 1 3 29 29 H 1.09000 * 109.47496 * 60.00136 * 3 2 1 30 30 H 1.08999 * 109.47186 * 299.99664 * 3 2 1 31 31 H 1.08999 * 109.47239 * 183.95706 * 5 4 3 32 32 H 1.08999 * 109.47218 * 303.95415 * 5 4 3 33 33 H 1.09001 * 109.47087 * 63.95365 * 5 4 3 34 34 H 1.09000 * 109.47638 * 49.99161 * 6 4 3 35 35 H 1.09009 * 109.47013 * 289.99618 * 6 4 3 36 36 H 0.97004 * 119.99445 * 359.97438 * 9 7 6 37 37 H 1.07998 * 126.06914 * 359.97438 * 11 10 9 38 38 H 1.08001 * 126.07068 * 180.26820 * 12 11 10 39 39 H 1.09000 * 109.47378 * 4.71603 * 14 13 12 40 40 H 1.09001 * 109.47153 * 244.71723 * 14 13 12 41 41 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0350 0.8857 -1.2542 6 6 4.0356 2.7929 0.2375 7 6 5.5220 2.7182 0.4742 8 8 6.0870 1.6452 0.4477 9 7 6.2233 3.8432 0.7165 10 6 7.6056 3.7736 0.9371 11 6 8.3835 2.6046 0.9340 12 6 9.6654 2.9585 1.1799 13 7 9.7013 4.2979 1.3419 14 6 10.8942 5.0985 1.6283 15 6 11.0369 6.1780 0.5864 16 1 10.3116 6.2592 -0.2098 17 6 12.0937 7.0612 0.6490 18 7 12.2213 7.9998 -0.2634 19 14 13.3485 6.9202 2.0257 20 1 12.9155 7.7522 3.1770 21 1 13.4575 5.5022 2.4528 22 1 14.6699 7.3943 1.5416 23 7 8.3994 4.7894 1.1819 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 5.1223 0.8324 -1.2001 32 1 3.6293 -0.1145 -1.4060 33 1 3.7436 1.5262 -2.0867 34 1 3.5495 3.2234 1.1130 35 1 3.8374 3.4189 -0.6327 36 1 5.7714 4.7012 0.7380 37 1 8.0228 1.6013 0.7617 38 1 10.5101 2.2881 1.2383 39 1 11.7753 4.4571 1.6099 40 1 10.7975 5.5550 2.6134 41 1 12.9670 8.6186 -0.2216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344681523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:19 Heat of formation + Delta-G solvation = 56.642344 kcal Electronic energy + Delta-G solvation = -21199.361196 eV Core-core repulsion = 17923.754413 eV Total energy + Delta-G solvation = -3275.606784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75891 -39.56215 -37.52253 -34.75753 -33.47591 -33.26542 -31.34506 -29.44815 -28.69746 -27.27267 -26.90532 -23.89836 -22.53102 -21.47860 -20.97619 -20.07960 -19.54763 -17.08363 -17.03889 -16.60987 -16.14910 -15.77283 -15.42101 -14.99142 -14.69633 -14.50414 -14.16424 -13.70425 -13.48028 -13.07903 -12.93388 -12.57110 -12.46854 -12.35761 -12.21396 -12.03323 -11.95126 -11.59339 -11.35917 -11.12829 -10.87910 -10.84599 -10.50047 -10.05705 -9.97331 -9.57908 -9.49938 -8.77237 -8.55684 -8.18295 -7.52352 -6.24019 -4.26331 2.31927 2.64518 2.86735 3.16004 3.21071 3.23793 3.57632 3.68352 3.90982 4.22399 4.57029 4.64510 4.72502 4.95014 5.01272 5.04031 5.08732 5.17693 5.22438 5.37179 5.45778 5.46614 5.49644 5.70573 5.71551 5.84125 5.93346 6.05870 6.21706 6.38884 6.44759 6.54481 6.65027 6.71602 6.80631 7.24986 7.36981 7.59392 7.81771 8.28434 8.33285 8.57065 8.85580 9.30935 10.88651 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.053154 B = 0.002696 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.645917 B =10382.556853 C =10574.640157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.525 5.525 5 C 0.014 3.986 6 C 0.041 3.959 7 C 0.519 3.481 8 O -0.500 6.500 9 N -0.633 5.633 10 C 0.262 3.738 11 C -0.283 4.283 12 C 0.051 3.949 13 N -0.320 5.320 14 C 0.232 3.768 15 C -0.534 4.534 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.888 5.888 19 Si 0.875 3.125 20 H -0.272 1.272 21 H -0.265 1.265 22 H -0.280 1.280 23 N -0.299 5.299 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.021 0.979 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.411 0.589 37 H 0.162 0.838 38 H 0.169 0.831 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.296 -13.094 1.201 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.249 5.249 5 C -0.134 4.134 6 C -0.091 4.091 7 C 0.304 3.696 8 O -0.372 6.372 9 N -0.282 5.282 10 C 0.008 3.992 11 C -0.314 4.314 12 C -0.098 4.098 13 N -0.101 5.101 14 C 0.113 3.887 15 C -0.572 4.572 16 H 0.103 0.897 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.701 3.299 20 H -0.197 1.197 21 H -0.190 1.190 22 H -0.206 1.206 23 N -0.129 5.129 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.437 -12.697 1.678 22.449 hybrid contribution 0.263 0.354 -0.155 0.467 sum -18.174 -12.343 1.523 22.022 Atomic orbital electron populations 1.21739 0.95610 1.01812 1.01733 1.21540 0.95229 0.96194 1.03017 1.22214 0.86493 0.97710 1.00868 1.61632 1.07214 1.19613 1.36447 1.22647 1.03167 0.99438 0.88124 1.21912 0.92139 0.91877 1.03141 1.20469 0.88977 0.83372 0.76737 1.90609 1.70490 1.28090 1.48016 1.42490 1.04609 1.10737 1.70357 1.19114 0.84302 0.93263 1.02523 1.21550 0.91392 0.99732 1.18753 1.22561 0.98933 0.86174 1.02169 1.48609 1.05902 1.04602 1.51020 1.20051 0.78656 0.91920 0.98087 1.21107 1.12201 1.12370 1.11543 0.89673 1.24841 0.97345 0.94652 0.95989 1.69873 1.31059 1.17456 1.34119 0.86880 0.81348 0.79109 0.82554 1.19704 1.18955 1.20595 1.77391 0.88930 1.19805 1.26797 0.92901 0.92506 0.92644 0.91804 0.90925 0.90652 0.94760 0.89100 0.91119 0.96073 0.87491 0.91470 0.75419 0.82085 0.81421 0.92900 0.94472 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.88 5.86 -26.73 -0.16 -1.03 16 3 C 0.05 0.42 4.96 -3.82 -0.02 0.40 16 4 N -0.52 -5.39 4.50 -244.37 -1.10 -6.49 16 5 C 0.01 0.14 9.01 60.07 0.54 0.69 16 6 C 0.04 0.39 5.45 -4.98 -0.03 0.36 16 7 C 0.52 7.20 7.52 -10.99 -0.08 7.12 16 8 O -0.50 -8.46 11.44 5.54 0.06 -8.40 16 9 N -0.63 -9.52 5.45 -11.13 -0.06 -9.58 16 10 C 0.26 5.17 8.11 -154.39 -1.25 3.92 16 11 C -0.28 -5.50 9.61 -39.83 -0.38 -5.88 16 12 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 13 N -0.32 -7.26 3.67 -62.56 -0.23 -7.49 16 14 C 0.23 5.51 5.33 -5.20 -0.03 5.48 16 15 C -0.53 -15.08 9.79 -34.44 -0.34 -15.42 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 17 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 19 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 N -0.30 -6.83 12.42 31.44 0.39 -6.44 16 24 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.47 6.47 -51.93 -0.34 0.13 16 28 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 30 H 0.03 0.25 8.12 -51.93 -0.42 -0.18 16 31 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 32 H 0.07 0.65 6.30 -51.93 -0.33 0.33 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.11 0.79 7.93 -51.93 -0.41 0.38 16 35 H 0.07 0.54 8.12 -51.92 -0.42 0.11 16 36 H 0.41 4.96 8.82 -40.82 -0.36 4.60 16 37 H 0.16 3.03 5.92 -52.49 -0.31 2.72 16 38 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 39 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 40 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -33.71 337.44 -7.61 -41.32 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.20 Total: 4.34 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.67 Total: -2.04 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.23 Total: -55.80 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.06 Total: -8.40 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.71 -7.61 -41.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344681523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.967 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds