Wall clock time and date at job start Tue Mar 31 2020 03:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47248 * 2 1 4 4 N 1.46903 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.46901 * 111.00104 * 66.04276 * 4 3 2 6 6 C 1.46895 * 111.00157 * 190.00066 * 4 3 2 7 7 C 1.50695 * 109.47676 * 169.99930 * 6 4 3 8 8 O 1.21297 * 119.99358 * 359.97438 * 7 6 4 9 9 N 1.34771 * 120.00677 * 180.02562 * 7 6 4 10 10 C 1.40154 * 120.00504 * 179.97438 * 9 7 6 11 11 C 1.40411 * 125.97106 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86611 * 179.74212 * 11 10 9 13 13 N 1.34965 * 107.86302 * 0.38043 * 12 11 10 14 14 C 1.46495 * 125.97869 * 179.87777 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71943 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31221 * 125.97729 * 179.97438 * 10 9 7 24 24 H 1.08999 * 109.47059 * 59.99617 * 1 2 3 25 25 H 1.08998 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46761 * 300.00315 * 1 2 3 27 27 H 1.09000 * 109.46761 * 239.99685 * 2 1 3 28 28 H 1.09008 * 109.47267 * 120.00215 * 2 1 3 29 29 H 1.09000 * 109.47496 * 60.00136 * 3 2 1 30 30 H 1.08999 * 109.47186 * 299.99664 * 3 2 1 31 31 H 1.08999 * 109.47239 * 183.95706 * 5 4 3 32 32 H 1.08999 * 109.47218 * 303.95415 * 5 4 3 33 33 H 1.09001 * 109.47087 * 63.95365 * 5 4 3 34 34 H 1.09000 * 109.47638 * 49.99161 * 6 4 3 35 35 H 1.09009 * 109.47013 * 289.99618 * 6 4 3 36 36 H 0.97004 * 119.99445 * 359.97438 * 9 7 6 37 37 H 1.07998 * 126.06914 * 359.97438 * 11 10 9 38 38 H 1.08001 * 126.07068 * 180.26820 * 12 11 10 39 39 H 1.09000 * 109.47378 * 4.71603 * 14 13 12 40 40 H 1.09001 * 109.47153 * 244.71723 * 14 13 12 41 41 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0350 0.8857 -1.2542 6 6 4.0356 2.7929 0.2375 7 6 5.5220 2.7182 0.4742 8 8 6.0870 1.6452 0.4477 9 7 6.2233 3.8432 0.7165 10 6 7.6056 3.7736 0.9371 11 6 8.3835 2.6046 0.9340 12 6 9.6654 2.9585 1.1799 13 7 9.7013 4.2979 1.3419 14 6 10.8942 5.0985 1.6283 15 6 11.0369 6.1780 0.5864 16 1 10.3116 6.2592 -0.2098 17 6 12.0937 7.0612 0.6490 18 7 12.2213 7.9998 -0.2634 19 14 13.3485 6.9202 2.0257 20 1 12.9155 7.7522 3.1770 21 1 13.4575 5.5022 2.4528 22 1 14.6699 7.3943 1.5416 23 7 8.3994 4.7894 1.1819 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 5.1223 0.8324 -1.2001 32 1 3.6293 -0.1145 -1.4060 33 1 3.7436 1.5262 -2.0867 34 1 3.5495 3.2234 1.1130 35 1 3.8374 3.4189 -0.6327 36 1 5.7714 4.7012 0.7380 37 1 8.0228 1.6013 0.7617 38 1 10.5101 2.2881 1.2383 39 1 11.7753 4.4571 1.6099 40 1 10.7975 5.5550 2.6134 41 1 12.9670 8.6186 -0.2216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344681523.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:19 Heat of formation + Delta-G solvation = 32.246914 kcal Electronic energy + Delta-G solvation = -21200.419062 eV Core-core repulsion = 17923.754413 eV Total energy + Delta-G solvation = -3276.664649 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.22303 -40.75913 -38.34978 -36.17534 -35.18618 -34.08477 -33.12514 -31.01024 -29.81543 -28.60235 -27.86007 -25.00998 -24.06947 -22.71684 -21.76028 -21.48231 -20.88103 -19.10642 -18.28539 -17.94969 -17.15165 -16.98958 -16.43377 -16.30126 -15.90829 -15.65580 -15.36875 -14.91095 -14.78220 -14.49160 -14.27029 -13.85609 -13.82883 -13.65720 -13.09455 -12.92952 -12.77832 -12.68469 -12.60379 -12.35381 -12.15748 -11.91294 -11.82197 -11.57953 -11.43162 -11.41234 -10.87965 -10.73469 -9.75984 -9.30550 -9.08761 -8.37848 -6.48165 0.95295 1.30679 1.38771 1.39949 1.47691 1.50106 2.24468 2.28594 2.30388 2.94624 3.00183 3.60435 3.97003 3.99788 4.16749 4.21865 4.29063 4.32973 4.51081 4.56243 4.58832 4.60145 4.72850 4.79794 4.86795 4.88072 4.91352 4.91817 5.09565 5.22290 5.24436 5.28594 5.33849 5.46527 5.90392 5.91378 6.01158 6.10215 6.30085 6.41325 6.57732 7.01918 7.14735 7.17059 8.79121 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.053154 B = 0.002696 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.645917 B =10382.556853 C =10574.640157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.544 5.544 5 C 0.018 3.982 6 C 0.049 3.951 7 C 0.518 3.482 8 O -0.531 6.531 9 N -0.629 5.629 10 C 0.267 3.733 11 C -0.294 4.294 12 C 0.059 3.941 13 N -0.345 5.345 14 C 0.239 3.761 15 C -0.546 4.546 16 H 0.026 0.974 17 C 0.013 3.987 18 N -0.942 5.942 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.230 1.230 22 H -0.278 1.278 23 N -0.349 5.349 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.424 0.576 37 H 0.167 0.833 38 H 0.209 0.791 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.885 -14.313 2.662 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.268 5.268 5 C -0.130 4.130 6 C -0.082 4.082 7 C 0.305 3.695 8 O -0.405 6.405 9 N -0.279 5.279 10 C 0.012 3.988 11 C -0.325 4.325 12 C -0.089 4.089 13 N -0.127 5.127 14 C 0.119 3.881 15 C -0.584 4.584 16 H 0.044 0.956 17 C -0.186 4.186 18 N -0.581 5.581 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.153 1.153 22 H -0.203 1.203 23 N -0.180 5.180 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.261 0.739 37 H 0.185 0.815 38 H 0.225 0.775 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.084 -13.937 3.134 23.839 hybrid contribution 0.287 0.673 -0.719 1.026 sum -18.797 -13.265 2.415 23.132 Atomic orbital electron populations 1.21706 0.94347 1.02209 1.02234 1.21522 0.96273 0.95865 1.02203 1.22274 0.84695 0.98152 1.01927 1.61603 1.08845 1.20026 1.36376 1.22534 1.01325 1.00321 0.88792 1.21974 0.88604 0.92304 1.05334 1.21389 0.90586 0.82327 0.75173 1.90591 1.71500 1.29219 1.49175 1.42695 1.02886 1.12135 1.70206 1.19525 0.86102 0.92773 1.00407 1.21752 0.91692 0.99868 1.19193 1.23239 1.00266 0.85339 1.00040 1.48506 1.05627 1.05604 1.52979 1.19893 0.80308 0.91321 0.96551 1.21226 1.11184 1.14540 1.11480 0.95575 1.25936 0.99835 0.93691 0.99104 1.70049 1.32361 1.18810 1.36855 0.85606 0.77384 0.81117 0.78197 1.19013 1.15277 1.20343 1.77308 0.89713 1.21610 1.29376 0.92357 0.92230 0.92146 0.92240 0.92157 0.89418 0.93727 0.92015 0.90368 0.95120 0.84639 0.89174 0.73888 0.81540 0.77451 0.89984 0.93760 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.12 -1.54 5.86 30.59 0.18 -1.36 16 3 C 0.06 0.73 4.96 86.30 0.43 1.16 16 4 N -0.54 -10.18 4.50 -927.06 -4.17 -14.35 16 5 C 0.02 0.36 9.01 127.69 1.15 1.51 16 6 C 0.05 0.82 5.45 85.56 0.47 1.29 16 7 C 0.52 13.86 7.52 87.66 0.66 14.52 16 8 O -0.53 -17.83 11.44 -3.08 -0.04 -17.86 16 9 N -0.63 -18.58 5.45 -307.52 -1.68 -20.26 16 10 C 0.27 10.60 8.11 133.33 1.08 11.68 16 11 C -0.29 -11.28 9.61 22.11 0.21 -11.07 16 12 C 0.06 2.21 11.44 83.52 0.96 3.17 16 13 N -0.35 -15.61 3.67 -351.85 -1.29 -16.90 16 14 C 0.24 11.12 5.33 85.63 0.46 11.58 16 15 C -0.55 -31.65 9.79 25.60 0.25 -31.40 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 17 C 0.01 0.74 5.47 84.65 0.46 1.21 16 18 N -0.94 -58.14 13.96 21.45 0.30 -57.84 16 19 Si 0.96 40.79 27.47 68.60 1.88 42.68 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.23 -8.48 6.54 99.48 0.65 -7.83 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 23 N -0.35 -16.28 12.42 -54.45 -0.68 -16.96 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.80 6.47 -2.39 -0.02 0.78 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.90 16 29 H 0.09 0.93 7.93 -2.39 -0.02 0.91 16 30 H 0.04 0.51 8.12 -2.39 -0.02 0.49 16 31 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 32 H 0.08 1.38 6.30 -2.39 -0.02 1.37 16 33 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.14 1.55 7.93 -2.39 -0.02 1.54 16 35 H 0.09 1.17 8.12 -2.38 -0.02 1.15 16 36 H 0.42 9.96 8.82 -92.71 -0.82 9.14 16 37 H 0.17 6.21 5.92 -2.91 -0.02 6.19 16 38 H 0.21 5.77 8.06 -2.91 -0.02 5.74 16 39 H 0.08 3.32 7.12 -2.39 -0.02 3.31 16 40 H 0.04 1.99 7.57 -2.39 -0.02 1.97 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -76.99 337.44 1.51 -75.49 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.16 Total: 24.39 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 7.02 Total: 1.62 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -7.51 Total: -126.31 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.86 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.68 kcal Total: -76.99 1.51 -75.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344681523.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.732 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds